Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48494 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47295 * 299.99914 * 3 2 1 6 6 H 1.48502 * 109.47200 * 59.99970 * 3 2 1 7 7 C 1.38648 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00193 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00164 * 185.06352 * 9 7 2 11 11 C 1.38874 * 120.06893 * 354.46263 * 10 9 7 12 12 C 1.38099 * 119.93433 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.06505 * 359.97396 * 12 11 10 14 14 C 1.50710 * 119.92925 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46797 * 90.00383 * 14 13 12 16 16 O 1.21281 * 119.99998 * 359.97438 * 15 14 13 17 17 N 1.34768 * 119.99604 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00150 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.67941 * 35.52456 * 18 17 15 20 20 C 1.53363 * 109.71555 * 156.05742 * 18 17 15 21 21 C 1.53111 * 109.50601 * 169.70334 * 20 18 17 22 22 C 1.53359 * 109.51539 * 289.73338 * 21 20 18 23 23 C 1.50840 * 108.38410 * 49.93020 * 22 21 20 24 24 C 1.39300 * 127.90160 * 163.12949 * 23 22 21 25 25 N 1.31067 * 108.08177 * 179.91683 * 24 23 22 26 26 N 1.40297 * 108.26785 * 0.40417 * 25 24 23 27 27 H 0.97002 * 126.09426 * 179.64862 * 26 25 24 28 28 C 1.34322 * 107.81764 * 359.69208 * 26 25 24 29 29 C 1.38296 * 120.14264 * 0.28223 * 13 12 11 30 30 C 1.38103 * 120.06717 * 359.48754 * 29 13 12 31 31 H 0.97006 * 119.99693 * 0.02562 * 1 2 3 32 32 H 1.08001 * 120.03712 * 0.02562 * 11 10 9 33 33 H 1.07998 * 119.97134 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.47188 * 330.00393 * 14 13 12 35 35 H 1.08997 * 109.46596 * 210.00109 * 14 13 12 36 36 H 0.96999 * 120.00335 * 359.97438 * 17 15 14 37 37 H 1.09003 * 109.47010 * 289.71391 * 20 18 17 38 38 H 1.09004 * 109.46781 * 49.70143 * 20 18 17 39 39 H 1.08998 * 109.46410 * 49.74633 * 21 20 18 40 40 H 1.09002 * 109.46648 * 169.73262 * 21 20 18 41 41 H 1.09001 * 109.68136 * 290.20729 * 22 21 20 42 42 H 1.09005 * 109.68554 * 169.65533 * 22 21 20 43 43 H 1.08007 * 125.95881 * 0.31662 * 24 23 22 44 44 H 1.07996 * 119.97266 * 179.71836 * 29 13 12 45 45 H 1.08001 * 120.04014 * 180.25666 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 0.1057 11 6 3.4572 -3.4394 0.0923 12 6 4.2025 -4.5969 0.2011 13 6 3.5688 -5.8201 0.3238 14 6 4.3851 -7.0813 0.4428 15 6 4.6643 -7.3635 1.8967 16 8 4.2424 -6.6141 2.7518 17 7 5.3828 -8.4487 2.2465 18 6 5.6547 -8.7229 3.6596 19 1 4.7967 -8.4261 4.2629 20 6 5.9290 -10.2194 3.8529 21 6 6.4609 -10.4631 5.2678 22 6 7.8790 -9.8915 5.3876 23 6 7.8665 -8.4754 4.8684 24 6 8.8195 -7.4803 5.0736 25 7 8.4221 -6.4007 4.4456 26 7 7.1935 -6.6785 3.8278 27 1 6.6670 -6.0590 3.2985 28 6 6.8755 -7.9547 4.1004 29 6 2.1876 -5.8888 0.3321 30 6 1.4367 -4.7344 0.2285 31 1 -0.4850 0.8401 -0.0004 32 1 3.9527 -2.4845 -0.0023 33 1 5.2813 -4.5470 0.1911 34 1 5.3275 -6.9559 -0.0904 35 1 3.8312 -7.9147 0.0108 36 1 5.7200 -9.0483 1.5626 37 1 5.0048 -10.7795 3.7108 38 1 6.6696 -10.5499 3.1246 39 1 5.8092 -9.9720 5.9904 40 1 6.4832 -11.5343 5.4680 41 1 8.5686 -10.4935 4.7958 42 1 8.1900 -9.8968 6.4323 43 1 9.7305 -7.5827 5.6446 44 1 1.6955 -6.8459 0.4235 45 1 0.3581 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268928176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = 23.947219 kcal Electronic energy + Delta-G solvation = -28533.897482 eV Core-core repulsion = 24518.023567 eV Total energy + Delta-G solvation = -4015.873915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82588 -39.89611 -38.85063 -37.17852 -36.44544 -34.47837 -32.54494 -31.99749 -31.17448 -30.16990 -29.74141 -28.91864 -26.59709 -25.15044 -23.55919 -22.66361 -21.99254 -21.74550 -21.17517 -20.15166 -19.05400 -18.04302 -17.98997 -17.06403 -16.98144 -16.43236 -15.38092 -15.07621 -14.65538 -14.56257 -14.40059 -14.37558 -14.28677 -13.95034 -13.78238 -13.70206 -13.56865 -13.41258 -13.21591 -12.72430 -12.55962 -12.36876 -11.92939 -11.72190 -11.54585 -11.32725 -11.28736 -11.14744 -10.87608 -10.78436 -10.73300 -10.61646 -10.41791 -9.94785 -9.69888 -9.51209 -9.32899 -8.82584 -8.52295 -8.17059 -7.18125 -6.44680 -4.03226 1.65851 2.22131 2.23490 2.50216 2.55512 2.72824 3.04446 3.13700 3.15533 3.20268 3.97407 4.23122 4.26467 4.48366 4.49927 4.66108 4.74686 4.84367 5.00515 5.03855 5.08634 5.19144 5.21791 5.26139 5.29226 5.30965 5.45130 5.50064 5.60286 5.67290 5.69024 5.73796 5.82596 5.87495 5.91250 6.15870 6.20415 6.40067 6.46925 6.68476 6.89380 7.04432 7.13198 7.21403 7.25655 7.34700 7.44396 7.52285 7.82264 8.00580 8.08502 9.01181 9.71069 10.73395 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.002306 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.281831 B =12137.350723 C =13249.954463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.157 3.843 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.173 4.173 14 C -0.079 4.079 15 C 0.506 3.494 16 O -0.517 6.517 17 N -0.736 5.736 18 C 0.207 3.793 19 H 0.107 0.893 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.039 4.039 23 C -0.242 4.242 24 C 0.051 3.949 25 N -0.295 5.295 26 N -0.451 5.451 27 H 0.442 0.558 28 C 0.081 3.919 29 C -0.058 4.058 30 C -0.191 4.191 31 H 0.269 0.731 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.403 0.597 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.182 0.818 44 H 0.108 0.892 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.072 -23.788 6.271 28.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.103 3.897 11 C -0.251 4.251 12 C -0.076 4.076 13 C -0.175 4.175 14 C -0.119 4.119 15 C 0.293 3.707 16 O -0.391 6.391 17 N -0.390 5.390 18 C 0.100 3.900 19 H 0.125 0.875 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.077 4.077 23 C -0.255 4.255 24 C -0.134 4.134 25 N -0.117 5.117 26 N -0.158 5.158 27 H 0.287 0.713 28 C -0.052 4.052 29 C -0.077 4.077 30 C -0.210 4.210 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.238 0.762 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.199 0.801 44 H 0.126 0.874 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.594 -21.753 6.587 27.011 hybrid contribution 0.290 0.182 -0.346 0.487 sum 14.884 -21.571 6.241 26.941 Atomic orbital electron populations 1.70051 1.05953 1.27557 1.46155 1.25293 0.95853 0.98845 0.96554 0.85647 0.79162 0.80372 0.78257 1.19099 1.20122 1.20115 1.21378 0.91828 0.80808 1.52690 0.89024 1.83976 1.34394 1.11480 1.78204 1.19388 0.90283 0.88054 0.91942 1.21105 0.93826 0.98775 1.11423 1.20491 0.97933 0.91817 0.97333 1.18592 0.93209 0.92615 1.13057 1.20421 1.01376 0.98397 0.91726 1.21323 0.76850 0.79941 0.92578 1.90780 1.49690 1.46610 1.52032 1.46258 1.56760 1.28535 1.07469 1.19639 0.93247 0.93908 0.83195 0.87532 1.21810 1.02347 0.92678 0.98753 1.21580 0.96683 1.01319 0.95950 1.19980 0.96651 0.90504 1.00606 1.19906 0.97210 0.98525 1.09826 1.23581 1.00002 0.90428 0.99411 1.77549 0.96426 1.23229 1.14544 1.46182 1.17718 1.10012 1.41884 0.71311 1.21352 0.97950 0.86503 0.99381 1.20387 0.92713 0.96707 0.97857 1.20164 0.99522 0.90289 1.11069 0.92068 0.85578 0.87970 0.88933 0.88666 0.76224 0.90137 0.90681 0.91274 0.90750 0.91304 0.90967 0.80133 0.87375 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -11.14 9.49 30.88 0.29 -10.85 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.16 9.76 0.05 0.00 -5.16 16 10 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.23 -5.17 9.17 -39.40 -0.36 -5.53 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 13 C -0.17 -2.89 4.38 -104.57 -0.46 -3.35 16 14 C -0.08 -0.90 5.83 -29.03 -0.17 -1.07 16 15 C 0.51 6.12 7.34 -10.99 -0.08 6.04 16 16 O -0.52 -8.70 15.08 5.56 0.08 -8.62 16 17 N -0.74 -6.14 5.09 -54.69 -0.28 -6.42 16 18 C 0.21 1.81 2.81 -68.84 -0.19 1.62 16 19 H 0.11 1.14 7.61 -51.93 -0.39 0.74 16 20 C -0.12 -0.64 5.39 -26.49 -0.14 -0.78 16 21 C -0.12 -0.62 5.90 -26.49 -0.16 -0.77 16 22 C -0.04 -0.24 6.28 -27.63 -0.17 -0.42 16 23 C -0.24 -2.34 5.91 -105.05 -0.62 -2.96 16 24 C 0.05 0.54 12.00 -17.48 -0.21 0.33 16 25 N -0.29 -4.01 12.71 30.55 0.39 -3.62 16 26 N -0.45 -5.92 7.34 33.48 0.25 -5.67 16 27 H 0.44 6.12 7.85 -182.45 -1.43 4.69 16 28 C 0.08 0.88 6.64 -82.33 -0.55 0.33 16 29 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 30 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 33 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.40 2.14 8.60 -40.82 -0.35 1.79 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 39 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.18 1.32 8.06 -52.48 -0.42 0.89 16 44 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -35.39 377.55 -9.42 -44.81 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.95 Total: 8.13 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -4.34 Total: -20.18 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 1.11 Total: -40.60 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.08 Total: -13.78 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.39 -9.42 -44.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268928176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.754 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds