Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48499 * 109.47278 * 270.00202 * 3 2 1 5 5 H 1.48499 * 109.47051 * 30.00060 * 3 2 1 6 6 H 1.48499 * 109.47167 * 149.99977 * 3 2 1 7 7 C 1.37870 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00339 * 0.02562 * 7 2 1 9 9 C 1.50710 * 120.00160 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47191 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47115 * 180.02562 * 10 9 7 12 12 S 1.81404 * 109.47179 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.54080 * 68.37744 * 12 11 10 14 14 O 1.42088 * 110.54374 * 291.62341 * 12 11 10 15 15 N 1.65603 * 104.44617 * 179.97438 * 12 11 10 16 16 C 1.46495 * 120.00270 * 270.00083 * 15 12 11 17 17 C 1.53004 * 109.47074 * 265.00479 * 16 15 12 18 18 C 1.53003 * 109.47229 * 179.97438 * 17 16 15 19 19 O 1.42892 * 109.47111 * 179.97438 * 18 17 16 20 20 C 1.46497 * 119.99696 * 90.00629 * 15 12 11 21 21 C 1.50707 * 109.47012 * 264.99410 * 20 15 12 22 22 C 1.38238 * 119.99792 * 90.00154 * 21 20 15 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.98090 * 21 20 15 27 27 H 0.96998 * 119.99934 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46804 * 59.99250 * 9 7 2 29 29 H 1.09005 * 109.46768 * 300.00231 * 9 7 2 30 30 H 1.08999 * 109.47229 * 60.00066 * 10 9 7 31 31 H 1.09005 * 109.47369 * 299.99760 * 10 9 7 32 32 H 1.08999 * 109.47061 * 59.99911 * 11 10 9 33 33 H 1.08999 * 109.47153 * 300.00165 * 11 10 9 34 34 H 1.09003 * 109.47348 * 25.00296 * 16 15 12 35 35 H 1.08999 * 109.47483 * 145.00192 * 16 15 12 36 36 H 1.09004 * 109.47087 * 299.99596 * 17 16 15 37 37 H 1.08993 * 109.47548 * 59.99780 * 17 16 15 38 38 H 1.08993 * 109.47303 * 299.99958 * 18 17 16 39 39 H 1.09010 * 109.46775 * 59.99834 * 18 17 16 40 40 H 0.96707 * 114.00145 * 180.02562 * 19 18 17 41 41 H 1.09005 * 109.47643 * 144.99871 * 20 15 12 42 42 H 1.09000 * 109.47513 * 24.99035 * 20 15 12 43 43 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 44 44 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 45 45 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 47 47 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0014 11 6 5.5516 -2.6364 -0.0001 12 16 6.1563 -4.3467 -0.0010 13 8 5.8612 -4.9792 -1.2388 14 8 5.8592 -4.9812 1.2351 15 7 7.8059 -4.2016 -0.0003 16 6 8.5362 -4.1366 -1.2686 17 6 9.0246 -5.5360 -1.6483 18 6 9.7867 -5.4682 -2.9732 19 8 10.2434 -6.7750 -3.3275 20 6 8.5351 -4.1384 1.2688 21 6 8.7681 -2.6973 1.6430 22 6 7.8366 -2.0233 2.4106 23 6 8.0506 -0.7016 2.7543 24 6 9.1962 -0.0540 2.3310 25 6 10.1251 -0.7264 1.5590 26 6 9.9133 -2.0496 1.2192 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6806 0.8905 29 1 3.8752 -0.6795 -0.8895 30 1 3.6586 -3.1492 -0.8921 31 1 3.6579 -3.1513 0.8880 32 1 5.9142 -2.1237 0.8908 33 1 5.9156 -2.1214 -0.8891 34 1 7.8759 -3.7581 -2.0490 35 1 9.3917 -3.4697 -1.1616 36 1 9.6849 -5.9145 -0.8679 37 1 8.1691 -6.2028 -1.7553 38 1 9.1262 -5.0899 -3.7534 39 1 10.6423 -4.8012 -2.8665 40 1 10.7363 -6.8075 -4.1588 41 1 9.4940 -4.6458 1.1626 42 1 7.9502 -4.6263 2.0486 43 1 6.9418 -2.5293 2.7417 44 1 7.3228 -0.1748 3.3536 45 1 9.3635 0.9785 2.6000 46 1 11.0180 -0.2193 1.2246 47 1 10.6414 -2.5764 0.6201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269720499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = -110.685569 kcal Electronic energy + Delta-G solvation = -28273.349592 eV Core-core repulsion = 24354.788762 eV Total energy + Delta-G solvation = -3918.560831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.62830 -37.76017 -37.03128 -36.50920 -35.80011 -34.82197 -32.83438 -32.22603 -31.10718 -30.75150 -28.39118 -26.75735 -24.78482 -23.50643 -22.78177 -21.94097 -21.41295 -20.41898 -18.89719 -17.83484 -17.59736 -16.99407 -16.85951 -16.53575 -16.07959 -15.71023 -15.36965 -15.23852 -15.11812 -14.38347 -14.21563 -13.86509 -13.80468 -13.63715 -13.39776 -12.98438 -12.85457 -12.77525 -12.49114 -12.33415 -12.13416 -11.97604 -11.93344 -11.71708 -11.60779 -11.49852 -11.35707 -11.13358 -11.11232 -10.97192 -10.94206 -10.24232 -10.10776 -9.89308 -9.77648 -9.30992 -9.17279 -9.09368 -9.00118 -8.59762 -6.09363 -4.08588 0.31184 1.09470 1.20163 2.62223 3.25273 3.32882 3.35061 3.60177 3.84402 3.94876 4.22140 4.38678 4.39260 4.54029 4.64652 4.76274 4.81175 4.90421 4.93313 4.99153 5.03343 5.07510 5.12551 5.24445 5.25043 5.29023 5.33254 5.39477 5.46445 5.58985 5.75330 5.78447 5.83841 5.93785 6.01269 6.11885 6.25120 6.26288 6.30869 6.34986 6.41770 6.65891 6.79339 7.11961 7.25806 7.32585 7.70101 8.46810 8.95161 9.51828 11.03958 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.003731 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.131326 B = 7503.255586 C = 9209.382042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.096 4.096 11 C -0.617 4.617 12 S 2.594 3.406 13 O -0.953 6.953 14 O -0.956 6.956 15 N -0.995 5.995 16 C 0.129 3.871 17 C -0.142 4.142 18 C 0.078 3.922 19 O -0.574 6.574 20 C 0.153 3.847 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.105 4.105 27 H 0.264 0.736 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.379 0.621 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.609 -4.777 -0.272 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.041 4.041 10 C -0.136 4.136 11 C -0.748 4.748 12 S 2.691 3.309 13 O -0.944 6.944 14 O -0.946 6.946 15 N -0.829 5.829 16 C 0.003 3.997 17 C -0.181 4.181 18 C 0.000 4.000 19 O -0.380 6.380 20 C 0.028 3.972 21 C -0.113 4.113 22 C -0.134 4.134 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.124 4.124 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.226 0.774 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 25.698 -5.676 0.289 26.319 hybrid contribution 0.802 2.029 -0.559 2.252 sum 26.500 -3.648 -0.271 26.751 Atomic orbital electron populations 1.69910 1.06273 1.26968 1.50727 1.25016 0.94743 0.99129 0.94473 0.86793 0.80354 0.83679 0.78556 1.20233 1.21260 1.19017 1.21136 0.89247 0.94767 1.51302 0.90724 1.19511 0.97268 0.90652 0.96691 1.21310 0.86598 1.02968 1.02703 1.30727 1.09378 1.23378 1.11358 1.05618 0.72634 0.78294 0.74403 1.93581 1.82655 1.73142 1.44990 1.93555 1.82596 1.73207 1.45256 1.57714 1.24939 1.89578 1.10690 1.21085 0.97677 0.96506 0.84446 1.21964 1.01330 0.98413 0.96435 1.22076 0.97002 0.84206 0.96715 1.86488 1.76412 1.29919 1.45147 1.20309 0.99187 0.92238 0.85460 1.20344 0.95363 0.96920 0.98684 1.21276 0.99085 0.95072 0.97989 1.21245 0.97480 0.94712 0.99680 1.21214 0.94388 0.99933 0.97962 1.21149 0.99407 0.94765 0.98678 1.21007 0.97040 0.94753 0.99552 0.92624 0.96198 0.96680 0.91057 0.91052 0.85357 0.85491 0.89738 0.90197 0.90861 0.89940 0.93173 0.93670 0.77427 0.89084 0.87636 0.85441 0.85604 0.86084 0.86149 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.38 27.47 -169.99 -4.67 16.72 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 -0.06 4.04 -27.88 -0.11 -0.17 16 10 C -0.10 -1.90 5.16 -26.74 -0.14 -2.03 16 11 C -0.62 -9.30 6.18 37.16 0.23 -9.07 16 12 S 2.59 38.30 5.37 -107.50 -0.58 37.72 16 13 O -0.95 -16.46 16.74 -57.54 -0.96 -17.42 16 14 O -0.96 -16.29 16.53 -57.54 -0.95 -17.24 16 15 N -1.00 -10.83 2.70 -115.66 -0.31 -11.14 16 16 C 0.13 1.16 5.26 -4.04 -0.02 1.14 16 17 C -0.14 -1.37 5.91 -26.73 -0.16 -1.53 16 18 C 0.08 0.62 7.05 37.16 0.26 0.88 16 19 O -0.57 -5.17 13.66 -35.23 -0.48 -5.66 16 20 C 0.15 1.44 5.78 -5.19 -0.03 1.41 16 21 C -0.11 -1.08 5.46 -104.62 -0.57 -1.65 16 22 C -0.12 -1.26 8.01 -39.58 -0.32 -1.58 16 23 C -0.11 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 26 C -0.10 -0.88 9.37 -39.58 -0.37 -1.25 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 29 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.13 1.77 5.88 -51.92 -0.31 1.47 16 33 H 0.13 1.68 8.14 -51.93 -0.42 1.25 16 34 H 0.08 0.76 7.61 -51.93 -0.39 0.36 16 35 H 0.08 0.52 7.61 -51.93 -0.40 0.12 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 40 H 0.38 1.58 9.12 45.56 0.42 1.99 16 41 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 42 H 0.11 1.07 6.76 -51.93 -0.35 0.72 16 43 H 0.13 1.40 7.69 -52.48 -0.40 0.99 16 44 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.12 0.75 7.90 -52.49 -0.41 0.34 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -36.50 397.26 -10.88 -47.38 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.84 Total: 2.35 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: -2.85 Total: -31.79 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.46 Total: -38.05 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.40 Total: -40.31 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 38.30 SS G_CDS: -0.58 Total: 37.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.50 -10.88 -47.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269720499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.306 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds