Wall clock time and date at job start Sat Apr 11 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86793 * 120.00169 * 2 1 4 4 H 1.48505 * 109.47445 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47504 * 300.00150 * 3 2 1 6 6 H 1.48497 * 109.47074 * 59.99942 * 3 2 1 7 7 C 1.38648 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99730 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00876 * 359.97438 * 7 2 1 10 10 C 1.35747 * 117.00679 * 185.05972 * 9 7 2 11 11 C 1.38874 * 120.06871 * 354.46360 * 10 9 7 12 12 C 1.38095 * 119.93185 * 179.97438 * 11 10 9 13 13 C 1.38304 * 120.07045 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.92939 * 180.02562 * 13 12 11 15 15 N 1.46496 * 109.47027 * 90.00309 * 14 13 12 16 16 C 1.34771 * 120.00060 * 179.71968 * 15 14 13 17 17 O 1.21280 * 119.99930 * 0.27677 * 16 15 14 18 18 C 1.50700 * 120.00398 * 180.27508 * 16 15 14 19 19 H 1.09003 * 109.46131 * 299.98624 * 18 16 15 20 20 C 1.53111 * 109.46712 * 180.02562 * 18 16 15 21 21 C 1.53361 * 109.50996 * 169.71320 * 20 18 16 22 22 C 1.50828 * 108.38556 * 49.92167 * 21 20 18 23 23 N 1.34329 * 128.02984 * 163.43168 * 22 21 20 24 24 H 0.96995 * 126.09350 * 0.11916 * 23 22 21 25 25 N 1.40298 * 107.81217 * 180.11971 * 23 22 21 26 26 C 1.31072 * 108.27354 * 359.94907 * 25 23 22 27 27 C 1.35739 * 124.12248 * 343.47472 * 22 21 20 28 28 C 1.50846 * 124.11158 * 359.79460 * 27 22 21 29 29 C 1.38302 * 120.13468 * 0.28097 * 13 12 11 30 30 C 1.38093 * 120.06728 * 359.48790 * 29 13 12 31 31 H 0.96998 * 119.99273 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.03469 * 359.95415 * 11 10 9 33 33 H 1.08003 * 119.96837 * 180.02562 * 12 11 10 34 34 H 1.08991 * 109.47288 * 329.99864 * 14 13 12 35 35 H 1.09002 * 109.46580 * 210.00141 * 14 13 12 36 36 H 0.96998 * 120.00444 * 359.97438 * 15 14 13 37 37 H 1.09003 * 109.46158 * 289.71879 * 20 18 16 38 38 H 1.09002 * 109.46565 * 49.70548 * 20 18 16 39 39 H 1.08999 * 109.68397 * 169.64543 * 21 20 18 40 40 H 1.08999 * 109.68072 * 290.19727 * 21 20 18 41 41 H 1.07998 * 125.96082 * 179.97438 * 26 25 23 42 42 H 1.08997 * 109.68043 * 223.72569 * 28 27 22 43 43 H 1.09002 * 109.68390 * 103.16795 * 28 27 22 44 44 H 1.07998 * 119.96040 * 179.72281 * 29 13 12 45 45 H 1.08006 * 120.03277 * 180.25779 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4571 -3.4396 0.0921 12 6 4.2023 -4.5971 0.2008 13 6 3.5686 -5.8203 0.3235 14 6 4.3849 -7.0815 0.4425 15 7 4.6564 -7.3559 1.8557 16 6 5.3706 -8.4439 2.2057 17 8 5.7928 -9.1931 1.3505 18 6 5.6446 -8.7297 3.6598 19 1 6.2003 -7.8989 4.0947 20 6 6.4697 -10.0138 3.7808 21 6 6.9665 -10.1693 5.2233 22 6 5.7923 -9.9899 6.1528 23 7 5.7013 -10.3363 7.4475 24 1 6.3962 -10.7586 7.9763 25 7 4.4219 -9.9785 7.8986 26 6 3.7714 -9.4336 6.8996 27 6 4.6117 -9.4278 5.7886 28 6 4.3159 -8.9024 4.4059 29 6 2.1873 -5.8889 0.3319 30 6 1.4366 -4.7345 0.2284 31 1 -0.4849 0.8401 0.0004 32 1 3.9526 -2.4847 -0.0035 33 1 5.2811 -4.5472 0.1909 34 1 5.3271 -6.9561 -0.0908 35 1 3.8309 -7.9149 0.0103 36 1 4.3190 -6.7566 2.5397 37 1 5.8496 -10.8702 3.5159 38 1 7.3242 -9.9614 3.1061 39 1 7.3940 -11.1627 5.3593 40 1 7.7215 -9.4121 5.4352 41 1 2.7603 -9.0555 6.9321 42 1 3.8085 -7.9405 4.4795 43 1 3.6840 -9.6114 3.8710 44 1 1.6954 -6.8460 0.4233 45 1 0.3579 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270146579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:04 Heat of formation + Delta-G solvation = 19.023187 kcal Electronic energy + Delta-G solvation = -27868.000952 eV Core-core repulsion = 23851.913515 eV Total energy + Delta-G solvation = -4016.087437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86415 -39.94635 -39.08623 -37.00908 -36.27467 -34.46647 -32.93954 -32.37666 -30.55771 -30.27355 -29.85995 -29.27668 -25.98192 -24.93375 -24.11471 -22.81210 -22.09804 -22.06620 -20.65096 -20.24555 -19.09012 -18.09853 -17.92314 -17.23956 -16.89252 -15.95427 -15.53941 -15.30462 -14.77679 -14.68091 -14.60414 -14.32194 -14.17238 -13.97032 -13.73087 -13.62435 -13.46040 -13.30348 -13.16833 -12.80695 -12.71011 -12.31870 -12.03718 -11.96935 -11.69007 -11.43741 -11.27247 -11.07015 -11.00418 -10.87742 -10.78778 -10.69791 -10.49032 -9.82898 -9.78773 -9.43888 -8.97601 -8.92629 -8.62275 -8.30300 -7.34105 -6.54478 -4.13286 1.53738 2.05292 2.11398 2.46977 2.50177 2.64268 3.06052 3.08553 3.14157 3.35232 3.89090 4.18787 4.31311 4.45353 4.48306 4.54655 4.74657 4.83779 5.00371 5.01934 5.07155 5.14603 5.20078 5.21761 5.32868 5.38337 5.40751 5.58432 5.60467 5.64516 5.78342 5.80381 5.91602 5.94840 5.96342 6.10775 6.33281 6.34090 6.50085 6.58637 6.78754 6.94084 6.94301 7.12654 7.25615 7.33777 7.34425 7.58285 7.70348 7.90379 8.23962 8.91047 9.59215 10.63106 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.002008 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.359046 B =13941.512173 C =14780.332010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.215 4.215 14 C 0.178 3.822 15 N -0.720 5.720 16 C 0.515 3.485 17 O -0.548 6.548 18 C -0.107 4.107 19 H 0.099 0.901 20 C -0.093 4.093 21 C -0.058 4.058 22 C 0.089 3.911 23 N -0.472 5.472 24 H 0.437 0.563 25 N -0.299 5.299 26 C 0.062 3.938 27 C -0.236 4.236 28 C -0.031 4.031 29 C -0.054 4.054 30 C -0.195 4.195 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.185 0.815 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.442 -17.746 10.720 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.070 4.070 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.371 5.371 16 C 0.301 3.699 17 O -0.426 6.426 18 C -0.129 4.129 19 H 0.117 0.883 20 C -0.131 4.131 21 C -0.097 4.097 22 C -0.041 4.041 23 N -0.179 5.179 24 H 0.280 0.720 25 N -0.122 5.122 26 C -0.124 4.124 27 C -0.247 4.247 28 C -0.069 4.069 29 C -0.073 4.073 30 C -0.214 4.214 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.237 0.763 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.202 0.798 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.131 0.869 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.215 -18.377 11.289 24.786 hybrid contribution 0.617 1.281 -0.162 1.431 sum 12.832 -17.096 11.128 24.099 Atomic orbital electron populations 1.70049 1.05999 1.27764 1.45501 1.25323 0.95871 0.98949 0.96372 0.85627 0.79140 0.80215 0.78343 1.19048 1.20067 1.20063 1.21400 0.91885 0.80707 1.52891 0.88872 1.83976 1.34524 1.11569 1.77527 1.19441 0.90317 0.88063 0.91621 1.21158 0.93786 0.98963 1.11723 1.20639 0.98352 0.91648 0.96350 1.19209 0.93568 0.93609 1.15229 1.19979 0.98428 0.94868 0.81104 1.46375 1.54684 1.26531 1.09507 1.20535 0.77899 0.80748 0.90735 1.90686 1.51723 1.47962 1.52186 1.21409 0.98433 1.00320 0.92711 0.88286 1.21348 1.00560 0.97042 0.94176 1.20427 0.93418 1.03065 0.92814 1.21014 0.98032 0.99019 0.86076 1.46041 1.13518 1.49854 1.08488 0.71975 1.77522 0.90720 1.21109 1.22801 1.23655 1.00287 0.98265 0.90169 1.19817 0.94576 1.12720 0.97631 1.19935 0.95336 1.01445 0.90231 1.20528 0.92755 0.96817 0.97190 1.20220 0.99687 0.90258 1.11271 0.91922 0.85444 0.87438 0.91643 0.91551 0.76299 0.90662 0.89682 0.89768 0.89457 0.79821 0.90147 0.90563 0.86939 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.45 13.67 55.48 0.76 -23.69 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.55 9.49 30.88 0.29 -10.26 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 9 O -0.17 -4.74 9.76 0.07 0.00 -4.74 16 10 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.24 -4.79 9.17 -39.40 -0.36 -5.15 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 13 C -0.21 -3.28 5.25 -104.57 -0.55 -3.83 16 14 C 0.18 2.34 5.80 -5.19 -0.03 2.31 16 15 N -0.72 -8.09 5.45 -61.48 -0.34 -8.42 16 16 C 0.51 5.90 7.13 -10.99 -0.08 5.82 16 17 O -0.55 -8.20 15.81 5.56 0.09 -8.12 16 18 C -0.11 -0.89 2.49 -91.53 -0.23 -1.12 16 19 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 20 C -0.09 -0.71 4.64 -26.49 -0.12 -0.83 16 21 C -0.06 -0.33 6.30 -27.63 -0.17 -0.50 16 22 C 0.09 0.70 7.08 -82.33 -0.58 0.12 16 23 N -0.47 -3.75 7.34 33.48 0.25 -3.50 16 24 H 0.44 2.12 8.96 -182.45 -1.64 0.49 16 25 N -0.30 -3.13 12.71 30.55 0.39 -2.74 16 26 C 0.06 0.58 12.00 -17.48 -0.21 0.37 16 27 C -0.24 -2.09 5.91 -105.05 -0.62 -2.71 16 28 C -0.03 -0.25 5.41 -27.63 -0.15 -0.40 16 29 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 30 C -0.20 -3.82 9.99 -39.40 -0.39 -4.22 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 33 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.40 4.01 8.13 -40.82 -0.33 3.68 16 37 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.08 0.69 7.75 -51.93 -0.40 0.29 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 43 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 45 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -32.98 378.72 -9.63 -42.61 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.12 Total: 6.64 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -4.33 Total: -18.56 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 1.06 Total: -38.36 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.98 -9.63 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270146579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.630 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds