Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 119.99834 * 2 1 4 4 H 1.48504 * 109.47161 * 269.99445 * 3 2 1 5 5 H 1.48501 * 109.47614 * 30.00007 * 3 2 1 6 6 H 1.48505 * 109.46988 * 150.00080 * 3 2 1 7 7 C 1.38648 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00879 * 359.97438 * 7 2 1 9 9 O 1.34832 * 119.99591 * 180.02562 * 7 2 1 10 10 C 1.35756 * 116.99722 * 185.05461 * 9 7 2 11 11 C 1.38876 * 120.07135 * 354.46906 * 10 9 7 12 12 C 1.38100 * 119.93239 * 179.97438 * 11 10 9 13 13 C 1.38295 * 120.06806 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.93208 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47118 * 90.00554 * 14 13 12 16 16 C 1.34771 * 119.99776 * 180.28098 * 15 14 13 17 17 O 1.21282 * 120.00452 * 359.71500 * 16 15 14 18 18 C 1.50710 * 119.99698 * 179.72434 * 16 15 14 19 19 H 1.08999 * 109.46665 * 60.01017 * 18 16 15 20 20 C 1.53108 * 109.46228 * 179.97438 * 18 16 15 21 21 C 1.53366 * 109.50103 * 190.29082 * 20 18 16 22 22 C 1.50827 * 108.38182 * 310.05727 * 21 20 18 23 23 N 1.34323 * 128.03250 * 196.56071 * 22 21 20 24 24 H 0.97005 * 126.09517 * 359.87846 * 23 22 21 25 25 N 1.40300 * 107.81621 * 179.88763 * 23 22 21 26 26 C 1.31070 * 108.26486 * 0.05686 * 25 23 22 27 27 C 1.35745 * 124.11952 * 16.53753 * 22 21 20 28 28 C 1.50838 * 124.11236 * 0.21277 * 27 22 21 29 29 C 1.38301 * 120.13847 * 0.23977 * 13 12 11 30 30 C 1.38098 * 120.07131 * 359.48913 * 29 13 12 31 31 H 0.96999 * 120.00082 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.03558 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.96493 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.47140 * 330.00411 * 14 13 12 35 35 H 1.09001 * 109.47446 * 210.00471 * 14 13 12 36 36 H 0.96998 * 119.99687 * 359.97438 * 15 14 13 37 37 H 1.08999 * 109.46510 * 310.29845 * 20 18 16 38 38 H 1.09003 * 109.46466 * 70.27899 * 20 18 16 39 39 H 1.08998 * 109.68499 * 69.78568 * 21 20 18 40 40 H 1.09002 * 109.67888 * 190.29684 * 21 20 18 41 41 H 1.08003 * 125.95257 * 180.02562 * 26 25 23 42 42 H 1.08997 * 109.68142 * 256.81123 * 28 27 22 43 43 H 1.09000 * 109.68268 * 136.25953 * 28 27 22 44 44 H 1.08004 * 119.96745 * 179.72050 * 29 13 12 45 45 H 1.07994 * 120.03972 * 180.26043 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4057 -0.1050 11 6 3.2234 -3.5745 -0.0921 12 6 3.8533 -4.7986 -0.2007 13 6 5.2295 -4.8615 -0.3217 14 6 5.9137 -6.1990 -0.4395 15 7 6.0175 -6.5718 -1.8525 16 6 6.5930 -7.7396 -2.2008 17 8 7.0296 -8.4796 -1.3448 18 6 6.6941 -8.1259 -3.6540 19 1 7.2758 -7.3757 -4.1897 20 6 7.3848 -9.4871 -3.7732 21 6 7.7196 -9.7644 -5.2439 22 6 6.4793 -9.5236 -6.0677 23 7 6.2291 -9.9269 -7.3242 24 1 6.8275 -10.4401 -7.8895 25 7 4.9482 -9.4735 -7.6736 26 6 4.4519 -8.8179 -6.6529 27 6 5.3958 -8.8336 -5.6287 28 6 5.2876 -8.2105 -4.2593 29 6 5.9797 -3.6996 -0.3294 30 6 5.3553 -2.4721 -0.2267 31 1 -0.4850 0.8400 -0.0004 32 1 2.1486 -3.5261 0.0027 33 1 3.2705 -5.7079 -0.1912 34 1 5.3333 -6.9522 0.0933 35 1 6.9119 -6.1360 -0.0061 36 1 5.6680 -5.9801 -2.5370 37 1 8.3034 -9.4810 -3.1865 38 1 6.7200 -10.2657 -3.3989 39 1 8.5142 -9.0944 -5.5722 40 1 8.0417 -10.7994 -5.3583 41 1 3.4803 -8.3479 -6.6130 42 1 4.6512 -8.8271 -3.6246 43 1 4.8634 -7.2099 -4.3437 44 1 7.0547 -3.7521 -0.4194 45 1 5.9412 -1.5650 -0.2370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270146583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = 21.076262 kcal Electronic energy + Delta-G solvation = -27913.871525 eV Core-core repulsion = 23897.873116 eV Total energy + Delta-G solvation = -4015.998409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87068 -39.98920 -39.24162 -37.16283 -36.31217 -34.52490 -32.94672 -32.48152 -30.67029 -30.36545 -29.86835 -29.38880 -26.15434 -24.78453 -24.10836 -22.82200 -22.20490 -22.08704 -20.63233 -20.26858 -19.09975 -18.03375 -17.91914 -17.43557 -17.02572 -15.99367 -15.62686 -15.32014 -14.92551 -14.72490 -14.53617 -14.26750 -14.17252 -13.95283 -13.91499 -13.69607 -13.41845 -13.34270 -13.17838 -12.85321 -12.71418 -12.31962 -12.26128 -12.00689 -11.93217 -11.51602 -11.29000 -11.08042 -10.99231 -10.86884 -10.85417 -10.78644 -10.23710 -9.83231 -9.81996 -9.49747 -9.02026 -8.96025 -8.62787 -8.39631 -7.49309 -6.50973 -4.17990 1.53294 1.93882 2.01087 2.46629 2.49548 2.61468 3.15526 3.19702 3.30157 3.34288 4.15712 4.17682 4.28563 4.39425 4.47712 4.50849 4.73219 4.73667 4.81743 5.00354 5.01167 5.05604 5.12250 5.19732 5.30539 5.33238 5.37399 5.54298 5.57956 5.59115 5.70679 5.78583 5.86032 5.93818 5.94958 6.01672 6.23120 6.33782 6.42875 6.47202 6.66239 6.88509 6.93694 7.10876 7.17381 7.34170 7.48180 7.54472 7.69602 7.93136 8.20405 8.83568 9.44129 10.56162 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.002085 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.698284 B =13425.125806 C =14641.998391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.166 3.834 11 C -0.224 4.224 12 C -0.052 4.052 13 C -0.206 4.206 14 C 0.177 3.823 15 N -0.720 5.720 16 C 0.515 3.485 17 O -0.547 6.547 18 C -0.107 4.107 19 H 0.099 0.901 20 C -0.093 4.093 21 C -0.058 4.058 22 C 0.088 3.912 23 N -0.472 5.472 24 H 0.437 0.563 25 N -0.299 5.299 26 C 0.062 3.938 27 C -0.236 4.236 28 C -0.031 4.031 29 C -0.057 4.057 30 C -0.195 4.195 31 H 0.281 0.719 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.403 0.597 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.185 0.815 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.540 -17.495 -10.753 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.113 3.887 11 C -0.243 4.243 12 C -0.071 4.071 13 C -0.207 4.207 14 C 0.055 3.945 15 N -0.372 5.372 16 C 0.301 3.699 17 O -0.425 6.425 18 C -0.128 4.128 19 H 0.117 0.883 20 C -0.131 4.131 21 C -0.097 4.097 22 C -0.042 4.042 23 N -0.179 5.179 24 H 0.280 0.720 25 N -0.121 5.121 26 C -0.124 4.124 27 C -0.247 4.247 28 C -0.070 4.070 29 C -0.075 4.075 30 C -0.215 4.215 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.202 0.798 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.132 0.868 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.478 -18.025 -11.283 25.726 hybrid contribution 0.219 1.079 0.115 1.107 sum 14.697 -16.946 -11.168 25.058 Atomic orbital electron populations 1.69642 1.05600 1.28684 1.47283 1.24489 0.95048 0.98931 0.95487 0.86176 0.80339 0.81341 0.79034 1.19799 1.20686 1.18329 1.20785 0.76753 0.96723 1.52426 0.87476 1.83577 1.22771 1.25840 1.79512 1.19188 0.91743 0.85516 0.92236 1.21281 1.01254 0.91765 1.09985 1.20700 0.93326 0.96844 0.96216 1.19278 0.93796 0.93519 1.14154 1.20000 0.99896 0.93396 0.81242 1.46350 1.60364 1.21011 1.09435 1.20543 0.77451 0.81089 0.90784 1.90690 1.48201 1.51500 1.52074 1.21409 0.98693 0.99564 0.93171 0.88277 1.21350 1.01976 0.95964 0.93852 1.20423 0.92552 1.02781 0.93953 1.21009 0.98140 0.98273 0.86743 1.46044 1.14874 1.45298 1.11688 0.71975 1.77528 0.92643 1.18648 1.23308 1.23661 1.00176 0.98005 0.90510 1.19811 0.95518 1.10569 0.98846 1.19937 0.94845 1.00953 0.91243 1.20532 0.98404 0.91220 0.97378 1.20214 0.91954 0.97909 1.11375 0.90896 0.84795 0.87074 0.91445 0.91504 0.76277 0.89684 0.90645 0.89471 0.89762 0.79802 0.90543 0.90144 0.86806 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.50 13.96 55.48 0.77 -23.73 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.92 28.62 -169.99 -4.86 16.06 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.39 -10.57 9.95 30.88 0.31 -10.27 16 8 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16 9 O -0.21 -5.34 8.59 0.03 0.00 -5.34 16 10 C 0.17 3.58 6.65 -39.11 -0.26 3.32 16 11 C -0.22 -4.44 9.17 -39.40 -0.36 -4.80 16 12 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 13 C -0.21 -3.00 5.25 -104.58 -0.55 -3.55 16 14 C 0.18 2.22 5.80 -5.19 -0.03 2.19 16 15 N -0.72 -7.77 5.45 -61.46 -0.34 -8.10 16 16 C 0.52 5.73 7.14 -10.98 -0.08 5.65 16 17 O -0.55 -8.02 15.81 5.56 0.09 -7.93 16 18 C -0.11 -0.86 2.50 -91.53 -0.23 -1.09 16 19 H 0.10 0.69 8.11 -51.93 -0.42 0.27 16 20 C -0.09 -0.69 4.64 -26.49 -0.12 -0.81 16 21 C -0.06 -0.32 6.30 -27.63 -0.17 -0.49 16 22 C 0.09 0.69 7.08 -82.33 -0.58 0.11 16 23 N -0.47 -3.73 7.34 33.48 0.25 -3.48 16 24 H 0.44 2.10 8.96 -182.44 -1.64 0.46 16 25 N -0.30 -3.13 12.71 30.54 0.39 -2.74 16 26 C 0.06 0.58 12.00 -17.48 -0.21 0.37 16 27 C -0.24 -2.08 5.91 -105.05 -0.62 -2.70 16 28 C -0.03 -0.25 5.41 -27.63 -0.15 -0.40 16 29 C -0.06 -0.85 9.69 -39.61 -0.38 -1.24 16 30 C -0.20 -3.54 9.99 -39.39 -0.39 -3.93 16 31 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.07 0.84 8.08 -51.93 -0.42 0.43 16 36 H 0.40 3.82 8.13 -40.82 -0.33 3.49 16 37 H 0.08 0.67 7.75 -51.93 -0.40 0.26 16 38 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.19 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 44 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 45 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -32.01 377.59 -9.47 -41.48 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.14 Total: 5.32 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -4.32 Total: -17.23 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 1.07 Total: -38.05 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.01 -9.47 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270146583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.556 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds