Wall clock time and date at job start Sat Apr 11 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86803 * 120.00198 * 2 1 4 4 H 1.48496 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46898 * 300.00207 * 3 2 1 6 6 H 1.48499 * 109.46998 * 59.99878 * 3 2 1 7 7 C 1.40156 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00315 * 197.93260 * 7 2 1 9 9 C 1.40963 * 119.99952 * 17.92776 * 7 2 1 10 10 C 1.40960 * 120.09797 * 24.70381 * 9 7 2 11 11 C 1.36210 * 119.89860 * 180.02562 * 10 9 7 12 12 C 1.40133 * 120.09688 * 0.02562 * 11 10 9 13 13 C 1.47426 * 119.89492 * 179.97438 * 12 11 10 14 14 N 1.32311 * 126.69067 * 179.97438 * 13 12 11 15 15 C 1.34086 * 105.54481 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.16562 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47115 * 90.00344 * 16 15 14 18 18 O 1.21279 * 119.99868 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00163 * 179.97438 * 17 16 15 20 20 C 1.46496 * 120.00026 * 179.97438 * 19 17 16 21 21 C 1.54269 * 110.03456 * 272.90564 * 20 19 17 22 22 C 1.54960 * 104.16167 * 217.13710 * 21 20 19 23 23 C 1.54886 * 102.77732 * 37.89140 * 22 21 20 24 24 C 1.53876 * 110.03003 * 155.69156 * 20 19 17 25 25 N 1.30111 * 107.66903 * 0.02562 * 15 14 13 26 26 O 1.21292 * 110.51143 * 0.02562 * 25 15 14 27 27 C 1.40130 * 120.20288 * 0.24824 * 12 11 10 28 28 C 1.36206 * 120.10003 * 359.48557 * 27 12 11 29 29 H 0.96999 * 120.00375 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.04975 * 359.97438 * 10 9 7 31 31 H 1.07992 * 119.94742 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.47309 * 209.99854 * 16 15 14 33 33 H 1.08998 * 109.47755 * 330.00274 * 16 15 14 34 34 H 0.96999 * 119.99938 * 0.02562 * 19 17 16 35 35 H 1.08991 * 110.01912 * 34.30009 * 20 19 17 36 36 H 1.09003 * 110.48534 * 335.78784 * 21 20 19 37 37 H 1.09000 * 110.48453 * 98.42585 * 21 20 19 38 38 H 1.08997 * 110.72102 * 279.57593 * 22 21 20 39 39 H 1.09004 * 110.92018 * 156.29706 * 22 21 20 40 40 H 1.09005 * 110.48502 * 203.40460 * 23 22 21 41 41 H 1.08998 * 110.60143 * 80.81506 * 23 22 21 42 42 H 1.09000 * 110.03007 * 238.56647 * 24 20 19 43 43 H 1.08993 * 110.03818 * 359.95190 * 24 20 19 44 44 H 1.07997 * 119.95088 * 179.74659 * 27 12 11 45 45 H 1.08005 * 120.05236 * 180.25053 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3464 -0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8822 2.3964 1.2125 7 6 2.0077 -1.2138 -0.0005 8 1 3.0484 -1.2367 0.2874 9 6 1.3543 -2.4047 -0.3769 10 6 0.2262 -2.3558 -1.2207 11 6 -0.4024 -3.5091 -1.5814 12 6 0.0704 -4.7428 -1.1143 13 6 -0.6138 -5.9883 -1.5070 14 7 -0.2844 -7.2183 -1.1476 15 6 -1.1825 -8.0185 -1.7401 16 6 -1.2368 -9.5212 -1.6410 17 6 -2.0995 -9.9166 -0.4703 18 8 -2.6188 -9.0622 0.2162 19 7 -2.2941 -11.2196 -0.1862 20 6 -3.1324 -11.6039 0.9521 21 6 -2.2835 -11.6576 2.2392 22 6 -2.8596 -12.8637 3.0232 23 6 -3.1707 -13.8847 1.9008 24 6 -3.6966 -13.0192 0.7371 25 7 -1.9980 -7.2637 -2.4170 26 8 -1.6923 -6.0958 -2.2999 27 6 1.1880 -4.7959 -0.2706 28 6 1.8261 -3.6481 0.0908 29 1 -0.4851 0.8400 0.0004 30 1 -0.1395 -1.4053 -1.5801 31 1 -1.2664 -3.4726 -2.2282 32 1 -1.6594 -9.9309 -2.5584 33 1 -0.2295 -9.9127 -1.4985 34 1 -1.8786 -11.9030 -0.7351 35 1 -3.9480 -10.8911 1.0723 36 1 -1.2341 -11.8260 1.9973 37 1 -2.4010 -10.7378 2.8122 38 1 -3.7701 -12.5810 3.5514 39 1 -2.1211 -13.2654 3.7170 40 1 -3.9351 -14.5898 2.2277 41 1 -2.2661 -14.4151 1.6033 42 1 -4.7861 -12.9933 0.7538 43 1 -3.3475 -13.4199 -0.2145 44 1 1.5464 -5.7486 0.0902 45 1 2.6898 -3.6902 0.7378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270322916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:11 Heat of formation + Delta-G solvation = 28.888045 kcal Electronic energy + Delta-G solvation = -27781.521057 eV Core-core repulsion = 23765.861392 eV Total energy + Delta-G solvation = -4015.659665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.58656 -40.10697 -37.97106 -37.77570 -35.18385 -34.25446 -33.87207 -32.40834 -30.41213 -29.61345 -29.34851 -29.07534 -27.43584 -25.97652 -23.29190 -22.48000 -21.24445 -20.95610 -20.88436 -20.56915 -19.83944 -17.67093 -17.62089 -17.05429 -16.85624 -16.42996 -15.80913 -15.57689 -15.46000 -14.92533 -14.61131 -14.12757 -13.80574 -13.73752 -13.64482 -13.33196 -12.91112 -12.66599 -12.25846 -12.22213 -12.00742 -11.85941 -11.73430 -11.55485 -11.53544 -11.39730 -11.30732 -11.14213 -11.09772 -10.97817 -10.91431 -10.76040 -10.27366 -10.00141 -9.96309 -9.67076 -9.61276 -9.24660 -9.21409 -7.80738 -7.50175 -7.13998 -4.68028 1.54469 2.39830 2.55097 2.78351 2.90734 2.96352 2.97767 3.07673 3.41538 3.67206 3.73619 4.10539 4.17713 4.27806 4.37093 4.51936 4.60839 4.74827 5.04768 5.12285 5.15629 5.19512 5.20005 5.29993 5.38556 5.43072 5.44791 5.54799 5.70799 5.82120 5.92471 5.95713 5.99195 6.14233 6.19826 6.34356 6.51020 6.69731 6.72589 6.76576 6.94652 7.06840 7.29405 7.35311 7.59336 7.75179 7.80769 7.94880 8.11476 8.29142 8.50858 8.63088 8.96493 9.76346 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.001876 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.896933 B =14918.480274 C =15552.142535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.427 4.427 8 H 0.089 0.911 9 C 0.128 3.872 10 C -0.175 4.175 11 C -0.052 4.052 12 C -0.197 4.197 13 C 0.283 3.717 14 N -0.520 5.520 15 C 0.185 3.815 16 C -0.043 4.043 17 C 0.520 3.480 18 O -0.519 6.519 19 N -0.728 5.728 20 C 0.140 3.860 21 C -0.136 4.136 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.131 4.131 25 N -0.408 5.408 26 O 0.053 5.947 27 C -0.018 4.018 28 C -0.234 4.234 29 H 0.290 0.710 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 -19.693 0.162 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.152 4.152 3 Si 0.739 3.261 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.454 4.454 8 H 0.107 0.893 9 C 0.124 3.876 10 C -0.195 4.195 11 C -0.072 4.072 12 C -0.202 4.202 13 C 0.074 3.926 14 N -0.255 5.255 15 C -0.090 4.090 16 C -0.085 4.085 17 C 0.304 3.696 18 O -0.393 6.393 19 N -0.382 5.382 20 C 0.036 3.964 21 C -0.175 4.175 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.169 4.169 25 N -0.124 5.124 26 O -0.001 6.001 27 C -0.038 4.038 28 C -0.253 4.253 29 H 0.101 0.899 30 H 0.142 0.858 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.298 -19.542 0.405 20.013 hybrid contribution 0.425 0.511 -0.179 0.688 sum -3.873 -19.031 0.225 19.422 Atomic orbital electron populations 1.69767 1.08003 1.30436 1.30060 1.26180 0.94875 1.02200 0.91923 0.86114 0.81077 0.79877 0.79023 1.17917 1.19219 1.19535 1.19948 0.98552 0.91157 1.35745 0.89284 1.17857 0.90379 0.92278 0.87107 1.20955 0.99730 0.96892 1.01876 1.20486 0.97586 0.91653 0.97457 1.16648 1.03334 0.85491 1.14770 1.26634 0.84244 0.94678 0.87021 1.72043 1.27326 0.99302 1.26846 1.24459 0.90960 0.97793 0.95756 1.19734 1.02549 0.87460 0.98731 1.20346 0.81220 0.82520 0.85498 1.90777 1.48372 1.49646 1.50534 1.46098 1.52569 1.07061 1.32436 1.21638 0.93296 0.96206 0.85284 1.22817 0.99816 0.98912 0.95934 1.22492 1.01039 0.95375 0.97359 1.22355 1.01003 0.97544 0.95246 1.22437 1.01188 0.93988 0.99262 1.74419 1.23202 0.89807 1.25008 1.85301 1.39551 1.21435 1.53782 1.20302 0.92468 0.97583 0.93417 1.20670 1.04575 0.92342 1.07739 0.89897 0.85805 0.88178 0.86697 0.86111 0.76603 0.89163 0.91022 0.90922 0.91272 0.91287 0.91439 0.91449 0.90728 0.91020 0.87717 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.76 10.96 55.56 0.61 -17.15 16 2 C 0.07 1.60 5.13 -17.32 -0.09 1.51 16 3 Si 0.92 16.61 29.60 -169.99 -5.03 11.58 16 4 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 5 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 6 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.43 -10.16 9.03 -37.83 -0.34 -10.50 16 8 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.14 5.57 -106.80 -0.60 2.55 16 10 C -0.18 -4.25 8.63 -39.28 -0.34 -4.58 16 11 C -0.05 -1.19 9.66 -39.60 -0.38 -1.57 16 12 C -0.20 -4.57 5.89 -104.74 -0.62 -5.18 16 13 C 0.28 6.38 7.99 -13.92 -0.11 6.27 16 14 N -0.52 -11.23 11.24 -10.16 -0.11 -11.34 16 15 C 0.18 3.54 6.69 -156.60 -1.05 2.49 16 16 C -0.04 -0.56 6.33 -29.03 -0.18 -0.75 16 17 C 0.52 7.30 7.82 -10.98 -0.09 7.21 16 18 O -0.52 -10.13 15.70 5.56 0.09 -10.05 16 19 N -0.73 -6.88 5.04 -52.72 -0.27 -7.14 16 20 C 0.14 1.31 3.23 -66.81 -0.22 1.10 16 21 C -0.14 -1.27 6.54 -25.03 -0.16 -1.43 16 22 C -0.12 -0.87 6.91 -24.70 -0.17 -1.04 16 23 C -0.12 -0.70 6.83 -25.07 -0.17 -0.88 16 24 C -0.13 -0.83 6.57 -25.61 -0.17 -0.99 16 25 N -0.41 -8.50 12.15 31.25 0.38 -8.12 16 26 O 0.05 1.17 11.12 16.40 0.18 1.35 16 27 C -0.02 -0.40 9.63 -39.60 -0.38 -0.78 16 28 C -0.23 -5.40 9.73 -39.28 -0.38 -5.78 16 29 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 30 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 31 H 0.10 2.11 7.93 -52.49 -0.42 1.70 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.40 2.34 8.31 -40.82 -0.34 2.00 16 35 H 0.09 1.06 7.59 -51.93 -0.39 0.67 16 36 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.37 7.61 -51.93 -0.40 -0.03 16 44 H 0.10 2.24 7.86 -52.49 -0.41 1.82 16 45 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -30.59 382.19 -9.89 -40.48 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.05 Total: 6.99 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -5.45 Total: -12.36 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.61 Total: -43.75 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.27 Total: -8.70 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.59 -9.89 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270322916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.366 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds