Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86795 * 119.99941 * 2 1 4 4 H 1.48506 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47079 * 299.99987 * 3 2 1 6 6 H 1.48499 * 109.47408 * 60.00298 * 3 2 1 7 7 C 1.39932 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00039 * 162.61248 * 7 2 1 9 9 C 1.41438 * 120.00283 * 342.62647 * 7 2 1 10 10 C 1.40792 * 120.17775 * 154.93670 * 9 7 2 11 11 C 1.37715 * 120.03903 * 179.97438 * 10 9 7 12 12 C 1.38376 * 120.40914 * 359.72051 * 11 10 9 13 13 C 1.39893 * 120.35559 * 0.55739 * 12 11 10 14 14 C 1.47846 * 120.02747 * 179.71367 * 13 12 11 15 15 N 1.32110 * 126.67227 * 359.97438 * 14 13 12 16 16 C 1.34210 * 105.54711 * 180.11867 * 15 14 13 17 17 C 1.50693 * 126.18795 * 179.90881 * 16 15 14 18 18 H 1.08998 * 109.18038 * 14.00797 * 17 16 15 19 19 C 1.53782 * 109.18433 * 254.70959 * 17 16 15 20 20 N 1.45476 * 107.44835 * 293.64108 * 19 17 16 21 21 C 1.46113 * 118.11839 * 177.22432 * 20 19 17 22 22 C 1.54913 * 105.80641 * 152.42316 * 21 20 19 23 23 C 1.55426 * 104.96306 * 355.94641 * 22 21 20 24 24 C 1.48876 * 109.15666 * 297.45506 * 20 19 17 25 25 H 1.08998 * 111.14793 * 306.48100 * 24 20 19 26 26 C 1.52317 * 106.88578 * 67.68414 * 24 20 19 27 27 O 1.42649 * 109.18830 * 133.26157 * 17 16 15 28 28 N 1.30036 * 107.62149 * 359.64202 * 16 15 14 29 29 O 1.21290 * 110.48157 * 0.22438 * 28 16 15 30 30 C 1.39031 * 119.94972 * 359.44378 * 13 12 11 31 31 H 0.97000 * 120.00166 * 359.97438 * 1 2 3 32 32 H 1.07998 * 119.98128 * 0.02562 * 10 9 7 33 33 H 1.08000 * 119.79735 * 179.97438 * 11 10 9 34 34 H 1.08005 * 119.82188 * 180.27525 * 12 11 10 35 35 H 1.09003 * 109.86497 * 174.15168 * 19 17 16 36 36 H 1.09000 * 109.86219 * 53.12410 * 19 17 16 37 37 H 1.08994 * 110.18228 * 271.50985 * 21 20 19 38 38 H 1.09008 * 110.17962 * 33.34360 * 21 20 19 39 39 H 1.08998 * 110.34400 * 237.07045 * 22 21 20 40 40 H 1.09008 * 110.42569 * 114.86130 * 22 21 20 41 41 H 1.08998 * 110.93410 * 219.52141 * 23 22 21 42 42 H 1.09004 * 110.93106 * 95.85680 * 23 22 21 43 43 H 1.09000 * 109.91479 * 179.32085 * 26 24 20 44 44 H 1.09004 * 109.91141 * 58.16471 * 26 24 20 45 45 H 1.07995 * 120.20253 * 180.29513 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0510 -1.2334 -0.2789 9 6 1.3492 -2.4087 0.3668 10 6 1.8193 -3.6486 -0.1063 11 6 1.1760 -4.8122 0.2526 12 6 0.0697 -4.7735 1.0828 13 6 -0.4152 -3.5503 1.5580 14 6 -1.6016 -3.5169 2.4395 15 7 -2.3023 -4.5553 2.8591 16 6 -3.2777 -4.0446 3.6267 17 6 -4.3491 -4.8269 4.3414 18 1 -4.0764 -5.8822 4.3501 19 6 -5.6827 -4.6557 3.5951 20 7 -6.0780 -3.2615 3.7226 21 6 -7.2943 -2.8255 3.0402 22 6 -7.8355 -1.6309 3.8648 23 6 -6.8854 -1.5259 5.0903 24 6 -6.2979 -2.9456 5.1607 25 1 -6.9982 -3.6467 5.6147 26 6 -4.9376 -3.0162 5.8422 27 8 -4.4533 -4.3597 5.6852 28 7 -3.1274 -2.7531 3.6467 29 8 -2.1730 -2.4264 2.9734 30 6 0.2228 -2.3665 1.2051 31 1 -0.4850 0.8400 0.0004 32 1 2.6853 -3.6873 -0.7503 33 1 1.5397 -5.7612 -0.1130 34 1 -0.4249 -5.6922 1.3618 35 1 -6.4419 -5.2982 4.0412 36 1 -5.5535 -4.9093 2.5429 37 1 -7.0617 -2.5065 2.0243 38 1 -8.0261 -3.6331 3.0234 39 1 -8.8562 -1.8281 4.1924 40 1 -7.7976 -0.7141 3.2763 41 1 -7.4432 -1.2899 5.9965 42 1 -6.1021 -0.7887 4.9138 43 1 -5.0402 -2.7799 6.9013 44 1 -4.2489 -2.3157 5.3698 45 1 -0.1452 -1.4203 1.5734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273876941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = 59.770522 kcal Electronic energy + Delta-G solvation = -29664.378391 eV Core-core repulsion = 25650.057890 eV Total energy + Delta-G solvation = -4014.320500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.80096 -40.44215 -37.70962 -37.24957 -35.14565 -33.89450 -33.09419 -32.13084 -30.47681 -29.80532 -29.28865 -28.65193 -25.48074 -24.83904 -24.23842 -23.63432 -22.21820 -21.12381 -20.92606 -20.57868 -19.58359 -17.68272 -17.41479 -16.83763 -16.56461 -16.11681 -15.88562 -15.52943 -15.20545 -14.83210 -14.74268 -14.45264 -14.05608 -13.85511 -13.52522 -13.06038 -12.92106 -12.78863 -12.58232 -12.17810 -11.93746 -11.74772 -11.66507 -11.46007 -11.44454 -11.34336 -11.18867 -11.05192 -10.89615 -10.84970 -10.59994 -10.58567 -10.37148 -9.93987 -9.87195 -9.77579 -9.64137 -9.22465 -8.47699 -7.60887 -7.55483 -6.87708 -4.49490 1.43045 2.43468 2.71641 3.04473 3.06058 3.09850 3.27439 3.50049 3.55361 3.74276 3.86806 3.93577 4.31443 4.44244 4.50687 4.57335 4.65989 4.85471 4.96604 5.06482 5.16223 5.19058 5.31261 5.42747 5.47767 5.48568 5.56056 5.61477 5.66789 5.76348 5.87184 5.98856 6.05207 6.11272 6.26383 6.36262 6.53635 6.66597 6.66891 6.87266 6.95332 6.97587 7.01307 7.12482 7.26367 7.61761 7.74939 7.83714 8.03264 8.39395 8.70318 8.73724 8.81845 10.07463 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.003108 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.512431 B = 9005.560759 C =10311.493460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.200 4.200 11 C -0.098 4.098 12 C -0.187 4.187 13 C -0.032 4.032 14 C 0.264 3.736 15 N -0.496 5.496 16 C 0.141 3.859 17 C 0.198 3.802 18 H 0.132 0.868 19 C 0.039 3.961 20 N -0.533 5.533 21 C 0.055 3.945 22 C -0.125 4.125 23 C -0.111 4.111 24 C 0.033 3.967 25 H 0.060 0.940 26 C 0.061 3.939 27 O -0.372 6.372 28 N -0.367 5.367 29 O 0.074 5.926 30 C -0.112 4.112 31 H 0.284 0.716 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 -3.246 7.813 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.220 4.220 11 C -0.116 4.116 12 C -0.208 4.208 13 C -0.034 4.034 14 C 0.049 3.951 15 N -0.231 5.231 16 C -0.133 4.133 17 C 0.137 3.863 18 H 0.150 0.850 19 C -0.090 4.090 20 N -0.259 5.259 21 C -0.073 4.073 22 C -0.163 4.163 23 C -0.149 4.149 24 C -0.075 4.075 25 H 0.078 0.922 26 C -0.015 4.015 27 O -0.289 6.289 28 N -0.078 5.078 29 O 0.017 5.983 30 C -0.134 4.134 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.475 -2.860 8.242 16.053 hybrid contribution -0.392 0.448 -0.252 0.646 sum -13.867 -2.413 7.991 16.185 Atomic orbital electron populations 1.69779 1.07598 1.29684 1.34390 1.25937 0.94763 1.01535 0.92124 0.86238 0.80960 0.80766 0.78714 1.18290 1.19908 1.19548 1.19605 0.98143 0.90851 1.40176 0.89894 1.17487 0.90932 0.92573 0.89097 1.21208 1.03150 0.92722 1.04957 1.20482 0.95857 0.97078 0.98231 1.20338 1.00328 0.94865 1.05220 1.17205 0.91095 0.96047 0.99102 1.26864 0.95136 0.79507 0.93559 1.72049 1.06727 1.28814 1.15556 1.26011 0.98497 0.88963 0.99807 1.20418 0.88477 0.96784 0.80595 0.85029 1.22566 0.95578 0.89010 1.01861 1.62634 1.35474 1.19562 1.08179 1.22465 0.89542 0.96476 0.98786 1.22631 0.98479 0.98538 0.96659 1.22273 0.98974 0.95893 0.97733 1.23233 0.97261 0.97500 0.89541 0.92174 1.22946 0.93665 0.84340 1.00542 1.87934 1.86028 1.30902 1.24002 1.74507 1.03866 1.15728 1.13652 1.85430 1.31147 1.35588 1.46155 1.21586 0.97786 0.95570 0.98449 0.90491 0.88215 0.88249 0.87681 0.92892 0.89139 0.90306 0.94444 0.91523 0.90715 0.90937 0.89992 0.88587 0.89199 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.62 10.97 55.55 0.61 -19.01 16 2 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.42 9.05 -37.73 -0.34 -11.76 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.54 5.57 -106.87 -0.59 1.95 16 10 C -0.20 -4.54 9.78 -38.81 -0.38 -4.92 16 11 C -0.10 -2.06 10.01 -39.72 -0.40 -2.45 16 12 C -0.19 -4.06 9.71 -38.91 -0.38 -4.44 16 13 C -0.03 -0.74 5.87 -105.05 -0.62 -1.35 16 14 C 0.26 5.81 8.01 -13.84 -0.11 5.70 16 15 N -0.50 -10.17 11.24 -10.17 -0.11 -10.28 16 16 C 0.14 2.61 6.72 -156.56 -1.05 1.56 16 17 C 0.20 2.88 3.79 -27.48 -0.10 2.78 16 18 H 0.13 1.70 8.14 -51.93 -0.42 1.27 16 19 C 0.04 0.49 5.47 -4.19 -0.02 0.47 16 20 N -0.53 -6.91 4.10 -225.04 -0.92 -7.83 16 21 C 0.05 0.60 6.89 -3.24 -0.02 0.57 16 22 C -0.13 -1.14 6.99 -24.43 -0.17 -1.31 16 23 C -0.11 -1.08 6.63 -25.03 -0.17 -1.24 16 24 C 0.03 0.37 2.79 -66.55 -0.19 0.19 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 C 0.06 0.80 6.29 36.81 0.23 1.03 16 27 O -0.37 -5.48 10.47 -35.23 -0.37 -5.85 16 28 N -0.37 -7.27 9.33 31.18 0.29 -6.98 16 29 O 0.07 1.61 11.12 16.70 0.19 1.80 16 30 C -0.11 -2.79 8.37 -38.45 -0.32 -3.11 16 31 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 32 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.11 2.15 7.86 -52.48 -0.41 1.73 16 35 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.36 8.07 -51.92 -0.42 -0.06 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.09 1.40 5.74 -51.93 -0.30 1.10 16 45 H 0.13 3.38 6.06 -52.49 -0.32 3.06 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -27.28 366.56 -10.61 -37.89 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.06 Total: 6.51 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -4.72 Total: -14.63 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.14 Total: -44.10 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.18 Total: -4.05 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.28 -10.61 -37.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273876941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.661 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds