Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99555 * 2 1 4 4 H 1.48504 * 109.47233 * 240.00039 * 3 2 1 5 5 H 1.48505 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99866 * 3 2 1 7 7 C 1.37872 * 120.00742 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00742 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46988 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46929 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99858 * 180.02562 * 12 11 10 14 14 O 1.21553 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.47904 * 120.00101 * 180.27524 * 13 12 11 16 16 C 1.39433 * 120.02818 * 179.45138 * 15 13 12 17 17 N 1.32049 * 119.95595 * 179.75158 * 16 15 13 18 18 C 1.32603 * 120.01389 * 0.49677 * 17 16 15 19 19 O 1.35484 * 119.97832 * 179.73337 * 18 17 16 20 20 C 1.42896 * 116.99853 * 0.02562 * 19 18 17 21 21 C 1.50708 * 109.47093 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.99717 * 269.71999 * 21 20 19 23 23 C 1.38236 * 119.99749 * 179.76781 * 22 21 20 24 24 C 1.38241 * 119.99770 * 0.50635 * 23 22 21 25 25 C 1.38233 * 120.00254 * 359.75016 * 24 23 22 26 26 C 1.38238 * 119.99724 * 89.99800 * 21 20 19 27 27 C 1.39594 * 120.04975 * 359.74978 * 18 17 16 28 28 N 1.31554 * 120.04159 * 0.02562 * 27 18 17 29 29 H 0.96994 * 120.00874 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47477 * 59.99648 * 9 7 2 31 31 H 1.08997 * 109.47150 * 299.99542 * 9 7 2 32 32 H 1.09007 * 109.47300 * 60.00253 * 10 9 7 33 33 H 1.08997 * 109.47600 * 299.99716 * 10 9 7 34 34 H 1.08998 * 109.47202 * 60.00203 * 11 10 9 35 35 H 1.08997 * 109.47419 * 300.00101 * 11 10 9 36 36 H 0.97001 * 120.00416 * 359.97438 * 12 11 10 37 37 H 1.07994 * 120.01742 * 359.97438 * 16 15 13 38 38 H 1.09005 * 109.46569 * 299.99335 * 20 19 18 39 39 H 1.08998 * 109.47533 * 59.99875 * 20 19 18 40 40 H 1.07999 * 120.00281 * 0.02562 * 22 21 20 41 41 H 1.07997 * 120.00243 * 180.23289 * 23 22 21 42 42 H 1.08001 * 119.99981 * 179.72334 * 24 23 22 43 43 H 1.07996 * 120.00196 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00331 * 0.02562 * 26 21 20 45 45 H 1.08002 * 119.98096 * 179.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4806 -4.9870 0.0012 12 7 2.4327 -6.1005 0.0018 13 6 1.9836 -7.3712 0.0019 14 8 0.7885 -7.5934 0.0020 15 6 2.9447 -8.4953 0.0087 16 6 2.4807 -9.8101 0.0204 17 7 3.3400 -10.8127 0.0214 18 6 4.6435 -10.5690 0.0214 19 8 5.5246 -11.5982 0.0279 20 6 4.9792 -12.9190 0.0341 21 6 6.1009 -13.9255 0.0416 22 6 6.6134 -14.3980 -1.1522 23 6 7.6454 -15.3176 -1.1454 24 6 8.1578 -15.7727 0.0551 25 6 7.6417 -15.3042 1.2489 26 6 6.6132 -14.3806 1.2421 27 6 5.1086 -9.2528 0.0149 28 7 4.2543 -8.2525 0.0094 29 1 -0.4851 0.8399 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8722 -3.6042 0.8906 33 1 2.8722 -3.6042 -0.8894 34 1 0.8537 -5.0451 -0.8886 35 1 0.8542 -5.0446 0.8913 36 1 3.3864 -5.9232 0.0014 37 1 1.4191 -10.0083 0.0249 38 1 4.3645 -13.0540 0.9242 39 1 4.3668 -13.0635 -0.8558 40 1 6.2104 -14.0455 -2.0901 41 1 8.0484 -15.6839 -2.0780 42 1 8.9612 -16.4946 0.0605 43 1 8.0418 -15.6601 2.1868 44 1 6.2094 -14.0152 2.1747 45 1 6.1704 -9.0557 0.0153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277306449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = -10.750294 kcal Electronic energy + Delta-G solvation = -26545.109513 eV Core-core repulsion = 22527.731001 eV Total energy + Delta-G solvation = -4017.378512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79307 -40.08936 -39.37652 -38.41047 -35.51730 -34.63284 -33.27580 -32.95707 -31.51963 -31.45600 -30.78374 -27.46037 -26.83136 -24.94939 -24.85458 -23.14595 -22.99628 -21.90178 -20.88945 -20.42886 -19.05851 -18.55549 -17.80259 -17.27375 -16.90513 -16.34456 -15.91430 -15.69743 -15.53997 -15.24959 -15.24364 -14.87385 -14.43735 -14.38098 -14.25533 -13.94813 -13.57528 -13.56732 -13.30723 -12.90508 -12.28572 -12.14572 -12.06722 -11.84326 -11.72042 -11.59942 -11.59383 -11.37175 -10.87507 -10.74681 -10.63216 -10.39552 -9.85507 -9.77625 -9.46562 -9.44016 -9.32036 -9.21046 -9.11855 -8.78851 -8.35685 -6.00487 -4.03565 0.14093 0.61051 0.62403 0.86034 2.35438 2.60261 3.12520 3.29329 3.33487 3.38119 3.40339 3.50391 3.59647 3.77931 4.01126 4.20549 4.24638 4.45631 4.46467 4.58456 4.66186 4.67764 4.83464 4.89905 4.97278 5.09095 5.14909 5.35321 5.39189 5.48384 5.56454 5.71008 5.76831 5.88533 5.96521 5.99523 6.15561 6.41035 6.41562 6.49265 6.60047 6.66092 6.81667 7.00142 7.17191 7.64446 7.65747 7.77064 7.98083 8.22591 8.39627 9.02846 9.60621 11.10766 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029039 B = 0.001396 C = 0.001352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.977711 B =20057.016021 C =20700.564536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.114 3.886 12 N -0.702 5.702 13 C 0.572 3.428 14 O -0.536 6.536 15 C -0.013 4.013 16 C 0.157 3.843 17 N -0.502 5.502 18 C 0.293 3.707 19 O -0.287 6.287 20 C 0.109 3.891 21 C -0.100 4.100 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.094 4.094 27 C 0.048 3.952 28 N -0.375 5.375 29 H 0.262 0.738 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.188 0.812 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.670 -34.049 0.104 37.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.352 5.352 13 C 0.356 3.644 14 O -0.413 6.413 15 C -0.152 4.152 16 C -0.002 4.002 17 N -0.231 5.231 18 C 0.110 3.890 19 O -0.192 6.192 20 C 0.034 3.966 21 C -0.100 4.100 22 C -0.112 4.112 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.119 4.119 28 N -0.093 5.093 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.244 0.756 37 H 0.205 0.795 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 14.891 -34.062 0.104 37.175 hybrid contribution 0.807 0.823 -0.002 1.153 sum 15.698 -33.239 0.101 36.760 Atomic orbital electron populations 1.69946 1.06056 1.26799 1.50508 1.25013 0.94841 0.99258 0.95250 0.86648 0.79567 0.83108 0.78602 1.20241 1.21279 1.20247 1.21173 0.93002 0.90946 1.51041 0.92654 1.19028 0.93826 0.90805 0.97685 1.21906 0.99810 0.93127 1.01120 1.21765 0.91804 0.84915 1.02313 1.46079 1.11787 1.05205 1.72124 1.17471 0.86826 0.82482 0.77660 1.90814 1.15068 1.84525 1.50885 1.22121 0.91377 0.95465 1.06205 1.23560 1.00876 0.86777 0.88986 1.68261 1.01674 1.36093 1.17092 1.21288 0.87778 0.89126 0.90852 1.86320 1.32244 1.14177 1.86449 1.21550 0.93695 0.77458 1.03882 1.19523 0.98478 0.98064 0.93940 1.21124 0.95991 0.96553 0.97548 1.21193 0.96845 0.97708 0.98393 1.21279 0.99474 0.99377 0.92581 1.21192 0.96877 0.97614 0.98459 1.21125 0.96024 0.96580 0.97482 1.22980 1.01608 0.85089 1.02260 1.68397 1.02127 1.33754 1.04995 0.92879 0.96231 0.96224 0.92575 0.92567 0.91348 0.91350 0.75583 0.79491 0.90153 0.90146 0.85700 0.85627 0.85764 0.85628 0.85699 0.79890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.11 2.01 5.67 -4.04 -0.02 1.98 16 12 N -0.70 -10.60 5.55 -61.23 -0.34 -10.94 16 13 C 0.57 8.69 7.80 -12.30 -0.10 8.59 16 14 O -0.54 -9.53 16.33 5.32 0.09 -9.44 16 15 C -0.01 -0.16 6.75 -82.88 -0.56 -0.72 16 16 C 0.16 1.73 10.76 -17.01 -0.18 1.54 16 17 N -0.50 -5.18 9.37 -12.76 -0.12 -5.30 16 18 C 0.29 2.82 7.50 -16.71 -0.13 2.69 16 19 O -0.29 -2.50 10.10 -18.14 -0.18 -2.68 16 20 C 0.11 0.78 5.44 36.01 0.20 0.98 16 21 C -0.10 -0.69 5.51 -104.62 -0.58 -1.26 16 22 C -0.09 -0.59 9.70 -39.58 -0.38 -0.97 16 23 C -0.12 -0.67 10.05 -39.58 -0.40 -1.07 16 24 C -0.11 -0.56 10.05 -39.58 -0.40 -0.96 16 25 C -0.12 -0.67 10.05 -39.58 -0.40 -1.07 16 26 C -0.09 -0.59 9.70 -39.58 -0.38 -0.97 16 27 C 0.05 0.44 11.18 -17.16 -0.19 0.25 16 28 N -0.38 -4.29 9.70 -9.49 -0.09 -4.38 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.41 5.50 7.81 -40.82 -0.32 5.18 16 37 H 0.19 1.83 7.64 -52.49 -0.40 1.43 16 38 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 39 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.12 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -32.83 394.97 -9.36 -42.19 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.17 Total: 0.60 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -4.21 Total: -6.44 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.19 Total: -46.68 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.10 Total: -12.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.83 -9.36 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277306449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.438 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds