Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99555 * 2 1 4 4 H 1.48504 * 109.47233 * 240.00039 * 3 2 1 5 5 H 1.48505 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99866 * 3 2 1 7 7 C 1.37872 * 120.00742 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00742 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46988 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46929 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99858 * 180.02562 * 12 11 10 14 14 O 1.21553 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.47904 * 120.00101 * 180.27524 * 13 12 11 16 16 C 1.39433 * 120.02818 * 179.45138 * 15 13 12 17 17 N 1.32049 * 119.95595 * 179.75158 * 16 15 13 18 18 C 1.32603 * 120.01389 * 0.49677 * 17 16 15 19 19 O 1.35484 * 119.97832 * 179.73337 * 18 17 16 20 20 C 1.42896 * 116.99853 * 0.02562 * 19 18 17 21 21 C 1.50708 * 109.47093 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.99717 * 269.71999 * 21 20 19 23 23 C 1.38236 * 119.99749 * 179.76781 * 22 21 20 24 24 C 1.38241 * 119.99770 * 0.50635 * 23 22 21 25 25 C 1.38233 * 120.00254 * 359.75016 * 24 23 22 26 26 C 1.38238 * 119.99724 * 89.99800 * 21 20 19 27 27 C 1.39594 * 120.04975 * 359.74978 * 18 17 16 28 28 N 1.31554 * 120.04159 * 0.02562 * 27 18 17 29 29 H 0.96994 * 120.00874 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47477 * 59.99648 * 9 7 2 31 31 H 1.08997 * 109.47150 * 299.99542 * 9 7 2 32 32 H 1.09007 * 109.47300 * 60.00253 * 10 9 7 33 33 H 1.08997 * 109.47600 * 299.99716 * 10 9 7 34 34 H 1.08998 * 109.47202 * 60.00203 * 11 10 9 35 35 H 1.08997 * 109.47419 * 300.00101 * 11 10 9 36 36 H 0.97001 * 120.00416 * 359.97438 * 12 11 10 37 37 H 1.07994 * 120.01742 * 359.97438 * 16 15 13 38 38 H 1.09005 * 109.46569 * 299.99335 * 20 19 18 39 39 H 1.08998 * 109.47533 * 59.99875 * 20 19 18 40 40 H 1.07999 * 120.00281 * 0.02562 * 22 21 20 41 41 H 1.07997 * 120.00243 * 180.23289 * 23 22 21 42 42 H 1.08001 * 119.99981 * 179.72334 * 24 23 22 43 43 H 1.07996 * 120.00196 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00331 * 0.02562 * 26 21 20 45 45 H 1.08002 * 119.98096 * 179.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4806 -4.9870 0.0012 12 7 2.4327 -6.1005 0.0018 13 6 1.9836 -7.3712 0.0019 14 8 0.7885 -7.5934 0.0020 15 6 2.9447 -8.4953 0.0087 16 6 2.4807 -9.8101 0.0204 17 7 3.3400 -10.8127 0.0214 18 6 4.6435 -10.5690 0.0214 19 8 5.5246 -11.5982 0.0279 20 6 4.9792 -12.9190 0.0341 21 6 6.1009 -13.9255 0.0416 22 6 6.6134 -14.3980 -1.1522 23 6 7.6454 -15.3176 -1.1454 24 6 8.1578 -15.7727 0.0551 25 6 7.6417 -15.3042 1.2489 26 6 6.6132 -14.3806 1.2421 27 6 5.1086 -9.2528 0.0149 28 7 4.2543 -8.2525 0.0094 29 1 -0.4851 0.8399 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8722 -3.6042 0.8906 33 1 2.8722 -3.6042 -0.8894 34 1 0.8537 -5.0451 -0.8886 35 1 0.8542 -5.0446 0.8913 36 1 3.3864 -5.9232 0.0014 37 1 1.4191 -10.0083 0.0249 38 1 4.3645 -13.0540 0.9242 39 1 4.3668 -13.0635 -0.8558 40 1 6.2104 -14.0455 -2.0901 41 1 8.0484 -15.6839 -2.0780 42 1 8.9612 -16.4946 0.0605 43 1 8.0418 -15.6601 2.1868 44 1 6.2094 -14.0152 2.1747 45 1 6.1704 -9.0557 0.0153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277306449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = -32.459786 kcal Electronic energy + Delta-G solvation = -26546.050908 eV Core-core repulsion = 22527.731001 eV Total energy + Delta-G solvation = -4018.319906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62319 -40.85096 -40.23292 -39.15133 -37.02866 -35.59223 -35.06317 -33.53467 -33.03490 -31.85098 -31.84989 -28.76577 -27.88599 -26.04924 -25.67517 -24.60714 -23.54695 -22.40959 -22.29572 -21.88571 -19.78353 -19.44949 -18.92079 -18.37964 -17.72324 -17.59323 -16.93724 -16.82062 -16.45411 -16.21939 -16.05403 -16.04978 -15.77040 -15.49723 -15.07244 -14.67936 -14.50613 -14.30311 -14.21671 -13.85944 -13.75737 -13.51113 -13.42324 -12.94901 -12.74840 -12.68660 -12.55129 -12.40802 -12.24594 -12.02639 -11.88538 -11.74627 -11.66538 -11.36268 -11.18932 -10.52889 -10.52841 -10.25408 -9.90011 -9.86761 -9.83780 -8.17680 -6.29007 -0.73559 -0.18813 0.17462 0.45114 1.42938 1.45821 1.53607 1.54875 1.67352 1.99269 2.43757 2.56714 2.73676 2.84614 2.96284 3.16094 3.25694 3.63259 3.74358 3.80274 3.98816 4.09135 4.17207 4.22084 4.22583 4.25839 4.32932 4.43778 4.56394 4.58071 4.69296 4.80797 4.95054 4.96268 4.99597 5.10377 5.17830 5.35507 5.49109 5.53385 5.56001 5.57630 5.72703 5.76604 5.84135 5.85913 6.03325 6.23491 6.28717 6.53213 6.87938 7.04009 7.40445 8.94109 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029039 B = 0.001396 C = 0.001352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.977711 B =20057.016021 C =20700.564536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.103 4.103 11 C 0.128 3.872 12 N -0.697 5.697 13 C 0.575 3.425 14 O -0.568 6.568 15 C -0.030 4.030 16 C 0.162 3.838 17 N -0.507 5.507 18 C 0.300 3.700 19 O -0.286 6.286 20 C 0.109 3.891 21 C -0.115 4.115 22 C -0.107 4.107 23 C -0.131 4.131 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.107 4.107 27 C 0.056 3.944 28 N -0.384 5.384 29 H 0.263 0.737 30 H -0.005 1.005 31 H -0.005 1.005 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.418 0.582 37 H 0.194 0.806 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.132 0.868 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.542 -35.146 0.111 39.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.141 4.141 11 C 0.004 3.996 12 N -0.347 5.347 13 C 0.360 3.640 14 O -0.447 6.447 15 C -0.168 4.168 16 C 0.003 3.997 17 N -0.236 5.236 18 C 0.116 3.884 19 O -0.190 6.190 20 C 0.035 3.965 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.132 4.132 25 C -0.149 4.149 26 C -0.125 4.125 27 C -0.112 4.112 28 N -0.101 5.101 29 H 0.072 0.928 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.256 0.744 37 H 0.211 0.789 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.150 0.850 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.150 0.850 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 17.785 -35.179 0.110 39.419 hybrid contribution 0.008 0.993 -0.004 0.993 sum 17.792 -34.186 0.107 38.539 Atomic orbital electron populations 1.70091 1.07877 1.27836 1.51601 1.25980 0.95718 1.03407 0.94740 0.85498 0.78227 0.78067 0.79223 1.19094 1.21102 1.19107 1.21660 0.93740 0.92105 1.50639 0.91666 1.18936 0.94386 0.92736 0.95278 1.21613 0.98527 0.91876 1.02107 1.21378 0.91753 0.84977 1.01452 1.45868 1.11805 1.04720 1.72323 1.17790 0.86910 0.82835 0.76499 1.90792 1.16625 1.85022 1.52263 1.21661 0.91502 0.94718 1.08902 1.23606 1.01342 0.86328 0.88427 1.68305 1.02071 1.35714 1.17531 1.21481 0.87636 0.89714 0.89589 1.86336 1.32162 1.14646 1.85866 1.21643 0.94050 0.76745 1.04074 1.19581 0.98899 0.98465 0.94528 1.21323 0.96444 0.96997 0.97716 1.21481 0.96551 0.97392 0.99438 1.21611 0.99762 0.99431 0.92362 1.21479 0.96581 0.97292 0.99511 1.21324 0.96478 0.97036 0.97643 1.23468 1.02591 0.84451 1.00682 1.68352 1.01759 1.34653 1.05359 0.92814 0.98706 0.98700 0.91495 0.91486 0.92332 0.92332 0.74427 0.78904 0.89947 0.89939 0.85029 0.83890 0.83712 0.83893 0.85034 0.76826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.44 0.28 -56.72 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -30.48 9.11 25.60 0.23 -30.24 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.04 5.27 30.60 0.16 -3.88 16 11 C 0.13 4.54 5.67 86.38 0.49 5.03 16 12 N -0.70 -20.78 5.55 -465.90 -2.58 -23.37 16 13 C 0.57 17.44 7.80 86.80 0.68 18.12 16 14 O -0.57 -20.57 16.33 -3.88 -0.06 -20.63 16 15 C -0.03 -0.74 6.75 41.79 0.28 -0.46 16 16 C 0.16 3.45 10.76 84.95 0.91 4.36 16 17 N -0.51 -9.87 9.37 -307.08 -2.88 -12.74 16 18 C 0.30 5.24 7.50 84.90 0.64 5.87 16 19 O -0.29 -4.47 10.10 -87.83 -0.89 -5.36 16 20 C 0.11 1.44 5.44 71.24 0.39 1.83 16 21 C -0.11 -1.45 5.51 -19.86 -0.11 -1.56 16 22 C -0.11 -1.21 9.70 22.27 0.22 -1.00 16 23 C -0.13 -1.21 10.05 22.27 0.22 -0.98 16 24 C -0.11 -0.96 10.05 22.27 0.22 -0.73 16 25 C -0.13 -1.21 10.05 22.27 0.22 -0.99 16 26 C -0.11 -1.22 9.70 22.27 0.22 -1.00 16 27 C 0.06 0.92 11.18 85.06 0.95 1.87 16 28 N -0.38 -8.17 9.70 -183.92 -1.78 -9.95 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 36 H 0.42 10.80 7.81 -92.71 -0.72 10.07 16 37 H 0.19 3.77 7.64 -2.91 -0.02 3.74 16 38 H 0.08 1.05 8.05 -2.38 -0.02 1.03 16 39 H 0.08 1.05 8.05 -2.39 -0.02 1.03 16 40 H 0.13 1.20 8.06 -2.91 -0.02 1.17 16 41 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.15 0.54 8.06 -2.91 -0.02 0.52 16 43 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.22 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -70.75 394.97 0.74 -70.01 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.29 Total: 14.75 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.34 Total: -1.91 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -6.96 Total: -102.79 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.95 Total: -25.99 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.75 0.74 -70.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277306449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.550 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds