Wall clock time and date at job start Sat Apr 11 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 120.00200 * 2 1 4 4 H 1.48495 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47020 * 300.00001 * 3 2 1 6 6 H 1.48501 * 109.47239 * 59.99516 * 3 2 1 7 7 C 1.38654 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99832 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00216 * 185.05627 * 9 7 2 11 11 C 1.38902 * 120.06568 * 354.49837 * 10 9 7 12 12 C 1.38074 * 119.92471 * 179.97438 * 11 10 9 13 13 C 1.38326 * 120.07450 * 359.74251 * 12 11 10 14 14 C 1.38281 * 120.13203 * 0.50769 * 13 12 11 15 15 C 1.50705 * 119.96177 * 179.76670 * 14 13 12 16 16 C 1.50698 * 109.47261 * 269.72506 * 15 14 13 17 17 O 1.21294 * 119.99943 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00093 * 179.97438 * 16 15 14 19 19 C 1.40164 * 120.00073 * 180.02562 * 18 16 15 20 20 C 1.40576 * 125.94691 * 0.02562 * 19 18 16 21 21 C 1.34691 * 107.76142 * 179.70135 * 20 19 18 22 22 N 1.35345 * 108.01299 * 0.31450 * 21 20 19 23 23 N 1.31395 * 125.94579 * 180.19389 * 19 18 16 24 24 C 1.46605 * 124.52641 * 179.89908 * 22 21 20 25 25 C 1.53230 * 108.80828 * 342.70753 * 24 22 21 26 26 C 1.53158 * 109.55343 * 50.59296 * 25 24 22 27 27 C 1.50892 * 127.67738 * 180.33480 * 21 20 19 28 28 C 1.38117 * 120.07175 * 359.49556 * 14 13 12 29 29 H 0.97009 * 119.99654 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.03344 * 359.97438 * 11 10 9 31 31 H 1.08005 * 119.96245 * 179.97438 * 12 11 10 32 32 H 1.07995 * 119.93576 * 180.27771 * 13 12 11 33 33 H 1.08998 * 109.47155 * 149.72590 * 15 14 13 34 34 H 1.08996 * 109.47022 * 29.72490 * 15 14 13 35 35 H 0.97004 * 119.99996 * 0.02562 * 18 16 15 36 36 H 1.08007 * 126.12243 * 359.95969 * 20 19 18 37 37 H 1.09005 * 109.58254 * 222.90748 * 24 22 21 38 38 H 1.09000 * 109.69193 * 102.57553 * 24 22 21 39 39 H 1.09002 * 109.46045 * 290.56971 * 25 24 22 40 40 H 1.09004 * 109.46291 * 170.61601 * 25 24 22 41 41 H 1.08997 * 109.51995 * 170.63234 * 26 25 24 42 42 H 1.09000 * 109.52095 * 50.44888 * 26 25 24 43 43 H 1.08994 * 109.71912 * 283.86768 * 27 21 20 44 44 H 1.08994 * 109.71977 * 44.52730 * 27 21 20 45 45 H 1.07999 * 120.03333 * 180.22825 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0699 -3.5046 0.1087 11 6 3.4574 -3.4394 0.0958 12 6 4.2024 -4.5967 0.2054 13 6 3.5686 -5.8196 0.3333 14 6 2.1875 -5.8882 0.3413 15 6 1.5010 -7.2230 0.4755 16 6 1.2650 -7.8065 -0.8937 17 8 1.6198 -7.1985 -1.8815 18 7 0.6606 -9.0044 -1.0208 19 6 0.4416 -9.5474 -2.2943 20 6 0.7998 -8.9538 -3.5172 21 6 0.4259 -9.7899 -4.5048 22 7 -0.1554 -10.8731 -3.9386 23 7 -0.1370 -10.6984 -2.5530 24 6 -0.6980 -12.0111 -4.6866 25 6 -0.8953 -11.5932 -6.1476 26 6 0.3926 -10.9552 -6.6766 27 6 0.6017 -9.5985 -5.9912 28 6 1.4366 -4.7341 0.2319 29 1 -0.4850 0.8402 -0.0004 30 1 3.9528 -2.4845 0.0002 31 1 5.2812 -4.5467 0.1951 32 1 4.1535 -6.7229 0.4234 33 1 0.5458 -7.0909 0.9837 34 1 2.1303 -7.8986 1.0548 35 1 0.3772 -9.4909 -0.2308 36 1 1.2910 -8.0001 -3.6423 37 1 -1.6561 -12.3064 -4.2585 38 1 -0.0022 -12.8487 -4.6370 39 1 -1.7105 -10.8725 -6.2122 40 1 -1.1385 -12.4707 -6.7467 41 1 0.3114 -10.8103 -7.7538 42 1 1.2383 -11.6075 -6.4587 43 1 -0.1336 -8.8832 -6.3594 44 1 1.6074 -9.2328 -6.1985 45 1 0.3580 -4.7881 0.2419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286237442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:50 Heat of formation + Delta-G solvation = 40.169542 kcal Electronic energy + Delta-G solvation = -28073.451105 eV Core-core repulsion = 24058.280643 eV Total energy + Delta-G solvation = -4015.170462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69851 -39.86174 -38.77700 -36.92949 -36.36275 -34.40073 -32.68451 -32.34170 -31.95807 -29.99978 -29.15501 -28.18422 -27.03657 -25.22528 -24.45434 -22.50048 -22.29881 -21.55315 -20.63329 -20.04206 -19.32425 -17.62321 -17.00798 -16.81905 -16.68571 -16.37544 -15.90694 -15.43680 -14.94733 -14.62334 -14.45816 -14.40741 -14.31190 -14.02406 -13.99847 -13.49812 -13.40945 -13.35199 -12.99250 -12.66424 -12.42878 -12.34046 -11.83230 -11.53779 -11.51411 -11.44621 -11.35861 -11.23835 -10.80645 -10.74034 -10.68046 -10.65340 -10.57471 -10.39354 -9.70559 -9.28432 -8.79269 -8.73171 -8.22614 -8.03299 -7.16809 -6.39341 -3.98175 1.69723 1.95719 2.24131 2.41972 2.44922 3.14265 3.17219 3.18736 3.20628 3.22915 4.01051 4.05748 4.22740 4.32665 4.39132 4.57501 4.81449 4.85700 4.94629 4.97458 5.08949 5.14782 5.22852 5.23927 5.31806 5.36716 5.45642 5.51089 5.58343 5.66041 5.72508 5.73368 5.79399 5.84068 5.98237 6.20735 6.24428 6.39045 6.69776 6.81178 6.96464 6.97426 7.12573 7.15276 7.30543 7.41936 7.49219 7.82316 7.87997 8.05891 8.18749 9.06582 9.77821 10.79026 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.002109 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.529791 B =13271.723198 C =14091.747574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.229 4.229 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.036 4.036 15 C -0.088 4.088 16 C 0.521 3.479 17 O -0.491 6.491 18 N -0.643 5.643 19 C 0.304 3.696 20 C -0.261 4.261 21 C 0.090 3.910 22 N -0.369 5.369 23 N -0.329 5.329 24 C 0.139 3.861 25 C -0.136 4.136 26 C -0.126 4.126 27 C -0.060 4.060 28 C -0.173 4.173 29 H 0.268 0.732 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.413 0.587 36 H 0.173 0.827 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 -23.862 -8.398 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.248 4.248 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.036 4.036 15 C -0.127 4.127 16 C 0.308 3.692 17 O -0.361 6.361 18 N -0.293 5.293 19 C 0.048 3.952 20 C -0.291 4.291 21 C -0.037 4.037 22 N -0.154 5.154 23 N -0.159 5.159 24 C 0.018 3.982 25 C -0.175 4.175 26 C -0.164 4.164 27 C -0.098 4.098 28 C -0.192 4.192 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.249 0.751 36 H 0.190 0.810 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.298 -24.268 -8.661 25.769 hybrid contribution 0.641 1.150 0.166 1.327 sum 0.344 -23.118 -8.495 24.632 Atomic orbital electron populations 1.70058 1.05927 1.27420 1.46543 1.25280 0.95838 0.98785 0.96710 0.85653 0.79141 0.80474 0.78184 1.19121 1.20197 1.20209 1.21364 0.91802 0.80846 1.52591 0.89062 1.83980 1.34234 1.11382 1.78745 1.19272 0.90242 0.87976 0.92418 1.21186 0.93834 0.98992 1.10782 1.20678 0.98395 0.92309 0.97944 1.20358 0.93247 0.96980 1.10797 1.18601 0.93224 0.91521 1.00281 1.20561 1.03121 0.96016 0.93048 1.20989 0.76462 0.79099 0.92669 1.90691 1.47364 1.58685 1.39367 1.42884 1.60274 1.20939 1.05173 1.19242 0.97104 0.92029 0.86798 1.21477 1.14085 1.04782 0.88733 1.21050 0.97803 0.88627 0.96180 1.48104 1.47964 1.16562 1.02819 1.77209 1.28637 1.18197 0.91809 1.21701 0.99869 0.86170 0.90474 1.21960 0.99237 1.02480 0.93812 1.21677 0.97604 0.96354 1.00729 1.20466 1.04076 0.98126 0.87149 1.19953 0.99118 0.89973 1.10190 0.92168 0.85608 0.87458 0.87847 0.87671 0.87818 0.75111 0.80952 0.89256 0.90211 0.90504 0.89080 0.90182 0.91171 0.89178 0.88791 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.26 9.76 0.04 0.00 -5.26 16 10 C 0.15 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 12 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.19 -3.48 9.70 -39.53 -0.38 -3.86 16 14 C -0.04 -0.64 4.37 -104.65 -0.46 -1.10 16 15 C -0.09 -1.14 5.83 -29.03 -0.17 -1.31 16 16 C 0.52 7.76 7.79 -10.99 -0.09 7.67 16 17 O -0.49 -9.34 13.16 5.55 0.07 -9.27 16 18 N -0.64 -8.19 5.45 -11.05 -0.06 -8.25 16 19 C 0.30 4.51 8.11 -154.17 -1.25 3.26 16 20 C -0.26 -3.96 9.55 -39.96 -0.38 -4.34 16 21 C 0.09 1.10 6.59 -82.21 -0.54 0.56 16 22 N -0.37 -4.38 4.04 -56.94 -0.23 -4.61 16 23 N -0.33 -4.67 12.63 31.50 0.40 -4.27 16 24 C 0.14 1.02 7.27 -3.87 -0.03 0.99 16 25 C -0.14 -0.69 5.93 -26.53 -0.16 -0.85 16 26 C -0.13 -0.70 5.97 -26.42 -0.16 -0.86 16 27 C -0.06 -0.49 6.29 -27.56 -0.17 -0.66 16 28 C -0.17 -3.77 9.65 -39.40 -0.38 -4.15 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 31 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.41 3.83 8.82 -40.82 -0.36 3.47 16 36 H 0.17 2.92 5.92 -52.48 -0.31 2.61 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.44 8.12 -51.93 -0.42 0.01 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -36.66 376.79 -9.26 -45.92 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.86 Total: 7.48 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -4.99 Total: -18.26 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.87 Total: -42.17 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.07 Total: -14.53 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.66 -9.26 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286237442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.088 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds