Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39630 * 120.15539 * 9.26646 * 3 2 1 5 5 C 1.37949 * 119.85161 * 179.97438 * 4 3 2 6 6 C 1.38366 * 120.14580 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.84435 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46913 * 89.99806 * 7 6 5 9 9 C 1.46766 * 124.34869 * 89.99978 * 8 7 6 10 10 C 1.54470 * 105.47446 * 162.97028 * 9 8 7 11 11 C 1.54632 * 101.76616 * 25.41965 * 10 9 8 12 12 H 1.08994 * 110.48542 * 216.39465 * 11 10 9 13 13 N 1.46499 * 110.48947 * 93.87884 * 11 10 9 14 14 C 1.34774 * 119.99966 * 156.84202 * 13 11 10 15 15 O 1.21279 * 119.99931 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99956 * 179.97438 * 14 13 11 17 17 C 1.52992 * 109.47257 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47257 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.37885 * 120.00047 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99792 * 359.72305 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 59.99902 * 22 20 18 24 24 H 1.48495 * 109.47159 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47290 * 299.99897 * 22 20 18 26 26 C 1.34741 * 124.30130 * 269.95103 * 8 7 6 27 27 O 1.21278 * 125.12080 * 0.42833 * 26 8 7 28 28 C 1.38356 * 120.30897 * 0.23009 * 6 5 4 29 29 C 1.37953 * 120.15063 * 359.49268 * 28 6 5 30 30 H 1.08001 * 120.07500 * 359.95287 * 4 3 2 31 31 H 1.07998 * 119.92674 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.47060 * 329.99976 * 7 6 5 33 33 H 1.09001 * 109.47080 * 209.99901 * 7 6 5 34 34 H 1.08999 * 110.24349 * 43.96551 * 9 8 7 35 35 H 1.09000 * 110.24440 * 281.97500 * 9 8 7 36 36 H 1.09005 * 110.97367 * 267.29776 * 10 9 8 37 37 H 1.09002 * 111.00279 * 143.54948 * 10 9 8 38 38 H 0.96999 * 119.99984 * 336.84047 * 13 11 10 39 39 H 1.09004 * 109.46932 * 59.99775 * 16 14 13 40 40 H 1.09005 * 109.47238 * 300.00152 * 16 14 13 41 41 H 1.09004 * 109.47330 * 60.00023 * 17 16 14 42 42 H 1.08997 * 109.47279 * 300.00509 * 17 16 14 43 43 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.92851 * 179.72549 * 28 6 5 45 45 H 1.07997 * 120.07769 * 180.25624 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.1906 -0.1944 5 6 4.6494 -1.1827 -0.1938 6 6 5.3374 0.0021 -0.0005 7 6 6.8444 0.0029 -0.0005 8 7 7.3326 0.2255 -1.3637 9 6 7.6080 1.5472 -1.9392 10 6 8.4884 1.2811 -3.1803 11 6 8.0843 -0.1651 -3.5493 12 1 8.9474 -0.7205 -3.9162 13 7 7.0160 -0.1591 -4.5517 14 6 6.8317 -1.2318 -5.3466 15 8 7.5500 -2.2022 -5.2316 16 6 5.7324 -1.2259 -6.3774 17 6 5.7405 -2.5525 -7.1393 18 6 4.6408 -2.5468 -8.1697 19 1 3.9999 -1.6834 -8.2706 20 6 4.4521 -3.6443 -8.9828 21 7 5.2354 -4.6939 -8.8628 22 14 3.0895 -3.6369 -10.2604 23 1 3.3096 -2.5187 -11.2124 24 1 3.0973 -4.9246 -10.9999 25 1 1.7786 -3.4613 -9.5851 26 6 7.5871 -0.7578 -2.2492 27 8 7.4395 -1.9428 -2.0375 28 6 4.6483 1.1853 0.1980 29 6 3.2688 1.1927 0.1940 30 1 2.7341 -2.1162 -0.3446 31 1 5.1936 -2.1035 -0.3436 32 1 7.2082 -0.9581 0.3633 33 1 7.2074 0.7987 0.6499 34 1 8.1454 2.1667 -1.2212 35 1 6.6771 2.0317 -2.2339 36 1 9.5471 1.3378 -2.9270 37 1 8.2450 1.9721 -3.9874 38 1 6.4413 0.6169 -4.6434 39 1 5.8939 -0.4050 -7.0761 40 1 4.7701 -1.0970 -5.8817 41 1 5.5792 -3.3737 -6.4409 42 1 6.7027 -2.6810 -7.6350 43 1 5.1025 -5.4661 -9.4346 44 1 5.1915 2.1058 0.3526 45 1 2.7320 2.1177 0.3450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291607039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = -16.913084 kcal Electronic energy + Delta-G solvation = -28549.808985 eV Core-core repulsion = 24532.163234 eV Total energy + Delta-G solvation = -4017.645751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00078 -39.79881 -38.70165 -36.85663 -36.56034 -34.82447 -33.42784 -32.88080 -31.49881 -31.12425 -30.37467 -27.49483 -26.99934 -25.41645 -23.25276 -23.04012 -22.25337 -21.50458 -19.81656 -19.65592 -19.28924 -17.23178 -17.10405 -16.72258 -16.28722 -15.88530 -15.68670 -15.37494 -15.01510 -14.78465 -14.62722 -14.38896 -14.31301 -13.98222 -13.87894 -13.75633 -13.32123 -13.20242 -13.05006 -12.99672 -12.53651 -12.38791 -12.28184 -12.20293 -12.08309 -11.75091 -11.59081 -11.40304 -11.14730 -10.89607 -10.60148 -10.31654 -9.93495 -9.65030 -9.42470 -9.31416 -9.19001 -9.05451 -8.98050 -8.76894 -8.29267 -5.93349 -3.97949 0.31079 0.94562 2.29073 2.37102 2.46369 2.86685 3.23526 3.36282 3.40893 3.42380 3.50834 3.55836 3.60288 4.07146 4.12967 4.30130 4.39706 4.47452 4.49534 4.52273 4.69277 4.79775 4.89616 5.05974 5.14948 5.19449 5.34492 5.34861 5.41403 5.42306 5.47252 5.58233 5.75849 5.77230 5.91838 6.08502 6.20478 6.22432 6.23620 6.40150 6.53880 6.82052 6.89368 7.17686 7.75105 7.77892 7.88945 8.05092 8.09956 8.40554 8.74950 9.10330 9.65382 11.17524 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.003068 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.225741 B = 9124.617877 C =11558.352207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.254 3.746 3 C -0.026 4.026 4 C -0.068 4.068 5 C -0.095 4.095 6 C -0.082 4.082 7 C 0.163 3.837 8 N -0.621 5.621 9 C 0.103 3.897 10 C -0.141 4.141 11 C 0.116 3.884 12 H 0.119 0.881 13 N -0.728 5.728 14 C 0.509 3.491 15 O -0.515 6.515 16 C -0.127 4.127 17 C 0.037 3.963 18 C -0.528 4.528 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.508 3.492 27 O -0.498 6.498 28 C -0.107 4.107 29 C -0.074 4.074 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.400 0.600 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.132 0.868 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 19.778 22.259 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.062 4.062 3 C -0.029 4.029 4 C -0.088 4.088 5 C -0.113 4.113 6 C -0.084 4.084 7 C 0.041 3.959 8 N -0.357 5.357 9 C -0.020 4.020 10 C -0.179 4.179 11 C 0.007 3.993 12 H 0.137 0.863 13 N -0.385 5.385 14 C 0.298 3.702 15 O -0.388 6.388 16 C -0.167 4.167 17 C 0.000 4.000 18 C -0.567 4.567 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.527 5.527 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C 0.292 3.708 27 O -0.369 6.369 28 C -0.126 4.126 29 C -0.095 4.095 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.234 0.766 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.150 0.850 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.470 18.159 22.422 29.198 hybrid contribution -0.732 0.411 -0.718 1.105 sum 3.739 18.570 21.704 28.808 Atomic orbital electron populations 1.81272 1.12078 1.07155 1.08586 1.25734 0.92702 0.93923 0.93833 1.16045 0.84314 0.95417 1.07153 1.21273 0.94344 0.96982 0.96230 1.21193 0.93555 0.98852 0.97741 1.20528 0.96553 0.93486 0.97819 1.20303 0.88854 1.04016 0.82706 1.48414 1.66541 1.07690 1.13068 1.22100 0.99581 0.84720 0.95578 1.22925 1.01140 0.95773 0.98036 1.21454 0.93425 0.97003 0.87449 0.86312 1.46060 1.35464 1.20339 1.36645 1.21686 0.85891 0.81366 0.81275 1.90716 1.46397 1.32854 1.68815 1.21863 0.94836 1.04424 0.95582 1.18895 0.97529 0.89318 0.94270 1.21174 1.15815 1.01327 1.18335 0.92688 1.25020 0.96269 0.95594 0.97438 1.69992 1.38078 1.05359 1.39305 0.86662 0.82475 0.77214 0.81630 1.20249 1.21273 1.20273 1.21552 0.77088 0.85883 0.86238 1.90767 1.50887 1.15346 1.79937 1.20934 0.93452 0.97761 1.00427 1.21133 0.94238 0.96579 0.97511 0.84702 0.84375 0.88748 0.89050 0.90022 0.90979 0.88586 0.88206 0.76551 0.90132 0.90298 0.95775 0.95769 0.92888 0.84995 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.46 18.54 41.84 0.78 -4.68 16 2 C 0.25 2.70 15.33 -22.47 -0.34 2.35 16 3 C -0.03 -0.22 5.73 -106.93 -0.61 -0.83 16 4 C -0.07 -0.60 9.76 -39.17 -0.38 -0.99 16 5 C -0.09 -0.86 9.68 -39.64 -0.38 -1.25 16 6 C -0.08 -0.58 5.47 -104.53 -0.57 -1.16 16 7 C 0.16 1.04 6.06 -5.19 -0.03 1.01 16 8 N -0.62 -4.95 2.92 -173.69 -0.51 -5.46 16 9 C 0.10 0.46 7.35 -3.13 -0.02 0.44 16 10 C -0.14 -0.76 6.78 -25.10 -0.17 -0.93 16 11 C 0.12 1.31 3.24 -67.94 -0.22 1.09 16 12 H 0.12 1.60 7.61 -51.93 -0.40 1.20 16 13 N -0.73 -9.42 5.11 -53.82 -0.28 -9.69 16 14 C 0.51 9.70 7.83 -10.99 -0.09 9.61 16 15 O -0.52 -12.34 15.66 5.56 0.09 -12.26 16 16 C -0.13 -2.56 5.64 -27.89 -0.16 -2.72 16 17 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 18 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.73 13.29 55.43 0.74 -27.00 16 22 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.51 6.53 7.67 -10.72 -0.08 6.44 16 27 O -0.50 -8.94 17.61 5.56 0.10 -8.84 16 28 C -0.11 -0.58 9.68 -39.64 -0.38 -0.96 16 29 C -0.07 -0.47 9.76 -39.16 -0.38 -0.85 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 33 H 0.09 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.39 8.05 -51.93 -0.42 -0.03 16 38 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.13 0.35 8.06 -52.49 -0.42 -0.08 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -39.90 398.20 -8.65 -48.55 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.18 Total: -1.87 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -4.36 Total: -1.64 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.73 Total: -46.84 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.18 Total: -21.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.90 -8.65 -48.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291607039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.636 kcal (2) G-P(sol) polarization free energy of solvation -39.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds