Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39636 * 120.15428 * 249.29850 * 3 2 1 5 5 C 1.37941 * 119.85037 * 180.02562 * 4 3 2 6 6 C 1.38372 * 120.14966 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.84388 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46890 * 90.00032 * 7 6 5 9 9 C 1.46764 * 124.34945 * 269.99281 * 8 7 6 10 10 C 1.54482 * 105.47040 * 196.99502 * 9 8 7 11 11 C 1.54618 * 101.76848 * 334.58869 * 10 9 8 12 12 H 1.08998 * 110.60252 * 143.53245 * 11 10 9 13 13 N 1.46507 * 110.48670 * 266.11809 * 11 10 9 14 14 C 1.34769 * 120.00057 * 201.22711 * 13 11 10 15 15 O 1.21283 * 120.00330 * 359.97438 * 14 13 11 16 16 C 1.50695 * 120.00194 * 179.97438 * 14 13 11 17 17 C 1.53004 * 109.47535 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 C 1.34421 * 124.34692 * 89.97674 * 8 7 6 27 27 O 1.21276 * 124.94434 * 359.56911 * 26 8 7 28 28 C 1.38359 * 120.30479 * 0.27575 * 6 5 4 29 29 C 1.37953 * 120.14973 * 359.48686 * 28 6 5 30 30 H 1.07998 * 120.07334 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.92781 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47352 * 330.00176 * 7 6 5 33 33 H 1.09005 * 109.46940 * 209.99974 * 7 6 5 34 34 H 1.08995 * 110.24270 * 315.99983 * 9 8 7 35 35 H 1.09005 * 110.24208 * 77.91229 * 9 8 7 36 36 H 1.08998 * 110.96518 * 216.46650 * 10 9 8 37 37 H 1.09004 * 110.96329 * 92.71026 * 10 9 8 38 38 H 0.97000 * 119.99595 * 21.23095 * 13 11 10 39 39 H 1.09000 * 109.47335 * 60.00047 * 16 14 13 40 40 H 1.08998 * 109.47423 * 300.00242 * 16 14 13 41 41 H 1.08994 * 109.47074 * 60.00312 * 17 16 14 42 42 H 1.08998 * 109.47285 * 300.00147 * 17 16 14 43 43 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 44 44 H 1.07999 * 119.92352 * 179.72740 * 28 6 5 45 45 H 1.08004 * 120.07109 * 180.25723 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.4278 1.1294 5 6 4.6486 0.4263 1.1224 6 6 5.3374 0.0023 -0.0003 7 6 6.8444 0.0041 -0.0007 8 7 7.3344 -1.2872 0.4881 9 6 7.6112 -1.5882 1.8976 10 6 8.4922 -2.8571 1.8826 11 6 8.0873 -3.5063 0.5390 12 1 8.9492 -3.9754 0.0646 13 7 7.0196 -4.4881 0.7452 14 6 6.8100 -5.4573 -0.1675 15 8 7.5048 -5.5165 -1.1598 16 6 5.7122 -6.4676 0.0448 17 6 5.6886 -7.4494 -1.1285 18 6 4.5903 -8.4593 -0.9164 19 1 3.9708 -8.4059 -0.0334 20 6 4.3764 -9.4513 -1.8497 21 7 5.1311 -9.5167 -2.9247 22 14 3.0145 -10.7027 -1.5872 23 1 2.9918 -11.6557 -2.7258 24 1 3.2609 -11.4449 -0.3247 25 1 1.7080 -10.0020 -1.5027 26 6 7.5878 -2.3486 -0.2969 27 8 7.4371 -2.3746 -1.5000 28 6 4.6490 -0.4173 -1.1247 29 6 3.2695 -0.4256 -1.1296 30 1 2.7328 0.7585 2.0065 31 1 5.1922 0.7568 1.9951 32 1 7.2070 0.8001 0.6498 33 1 7.2073 0.1702 -1.0150 34 1 8.1487 -0.7611 2.3613 35 1 6.6807 -1.7797 2.4321 36 1 8.2493 -3.5105 2.7205 37 1 9.5508 -2.5969 1.8869 38 1 6.4636 -4.4406 1.5386 39 1 4.7529 -5.9538 0.1084 40 1 5.8943 -7.0129 0.9708 41 1 6.6478 -7.9632 -1.1916 42 1 5.5067 -6.9044 -2.0547 43 1 5.8381 -8.8666 -3.0612 44 1 5.1928 -0.7428 -1.9991 45 1 2.7334 -0.7573 -2.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291607042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = -20.921116 kcal Electronic energy + Delta-G solvation = -28620.004233 eV Core-core repulsion = 24602.184681 eV Total energy + Delta-G solvation = -4017.819552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07339 -39.83265 -38.79602 -36.87502 -36.59986 -34.89838 -33.75125 -32.93988 -31.52140 -31.09386 -30.33731 -27.50343 -27.00361 -24.99490 -23.27657 -23.06947 -22.33046 -21.65740 -20.04014 -19.69347 -19.30979 -17.26986 -17.20673 -16.82959 -16.34572 -16.03721 -15.88603 -15.51369 -15.03963 -14.80080 -14.70526 -14.34808 -14.02942 -13.91582 -13.83198 -13.69222 -13.52580 -13.22343 -13.18775 -13.04066 -12.55789 -12.43268 -12.39393 -12.18478 -12.14180 -11.82555 -11.67230 -11.44465 -11.40351 -10.80886 -10.36486 -10.12371 -10.09804 -9.91360 -9.44713 -9.34864 -9.31831 -9.05374 -8.83897 -8.51230 -8.26000 -6.29165 -3.99438 0.28850 0.92334 2.24916 2.35627 2.43446 2.83553 3.13748 3.45450 3.47907 3.49624 3.53062 3.55609 3.68372 4.01955 4.07913 4.27143 4.36128 4.44930 4.47933 4.59797 4.64741 4.76668 4.87144 5.01949 5.12436 5.16379 5.28413 5.32068 5.36094 5.41708 5.48510 5.55881 5.67068 5.74915 5.89678 6.05652 6.09266 6.10561 6.17262 6.37818 6.45689 6.73189 6.79535 7.16196 7.54230 7.59759 7.67081 8.01104 8.21535 8.51775 8.64632 8.94605 9.74320 11.11833 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008290 B = 0.003113 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.557017 B = 8992.281820 C =11440.708189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.253 3.747 3 C -0.025 4.025 4 C -0.074 4.074 5 C -0.107 4.107 6 C -0.082 4.082 7 C 0.163 3.837 8 N -0.619 5.619 9 C 0.102 3.898 10 C -0.140 4.140 11 C 0.116 3.884 12 H 0.118 0.882 13 N -0.727 5.727 14 C 0.509 3.491 15 O -0.517 6.517 16 C -0.120 4.120 17 C 0.025 3.975 18 C -0.609 4.609 19 H 0.049 0.951 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 1.069 2.931 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 C 0.507 3.493 27 O -0.499 6.499 28 C -0.095 4.095 29 C -0.068 4.068 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.401 0.599 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.273 0.727 44 H 0.138 0.862 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 25.743 15.730 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.062 4.062 3 C -0.029 4.029 4 C -0.095 4.095 5 C -0.126 4.126 6 C -0.084 4.084 7 C 0.041 3.959 8 N -0.355 5.355 9 C -0.021 4.021 10 C -0.178 4.178 11 C 0.007 3.993 12 H 0.136 0.864 13 N -0.384 5.384 14 C 0.297 3.703 15 O -0.390 6.390 16 C -0.160 4.160 17 C -0.013 4.013 18 C -0.647 4.647 19 H 0.067 0.933 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.898 3.102 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 C 0.291 3.709 27 O -0.370 6.370 28 C -0.114 4.114 29 C -0.088 4.088 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.235 0.765 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.083 0.917 44 H 0.156 0.844 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.899 24.384 13.592 28.187 hybrid contribution 0.763 1.497 1.220 2.076 sum 4.662 25.881 14.812 30.182 Atomic orbital electron populations 1.81274 1.12060 1.08400 1.07266 1.25728 0.92696 0.93863 0.93948 1.16045 0.84335 1.05857 0.96639 1.21132 0.94229 0.97435 0.96660 1.20936 0.93466 1.00227 0.97937 1.20521 0.96517 0.97456 0.93941 1.20308 0.88868 0.84634 1.02062 1.48333 1.66339 1.12514 1.08342 1.22115 0.99595 0.98093 0.82254 1.22921 1.01192 0.96424 0.97298 1.21465 0.93276 0.88698 0.95845 0.86407 1.46033 1.36247 1.29904 1.26203 1.21663 0.85597 0.81054 0.81943 1.90711 1.47606 1.72962 1.27732 1.21716 0.94982 0.95797 1.03518 1.19016 0.97401 0.92910 0.91968 1.22017 1.18330 1.14969 1.09421 0.93304 1.25835 1.00983 0.99001 0.93078 1.70732 1.19410 1.37573 1.26878 0.83548 0.75016 0.75846 0.75822 1.20753 1.21468 1.21506 1.21455 0.77226 0.84472 0.87697 1.90768 1.50923 1.81999 1.13340 1.21190 0.93561 0.97668 0.98933 1.21277 0.94342 0.96215 0.97002 0.84914 0.84984 0.88996 0.88720 0.89954 0.90942 0.88194 0.88505 0.76473 0.90137 0.89963 0.96685 0.96677 0.91683 0.84405 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.47 18.54 41.84 0.78 -4.69 16 2 C 0.25 2.71 15.33 -22.47 -0.34 2.37 16 3 C -0.03 -0.22 5.73 -106.93 -0.61 -0.83 16 4 C -0.07 -0.47 9.76 -39.17 -0.38 -0.85 16 5 C -0.11 -0.58 9.68 -39.64 -0.38 -0.96 16 6 C -0.08 -0.59 5.47 -104.53 -0.57 -1.16 16 7 C 0.16 1.04 6.05 -5.19 -0.03 1.01 16 8 N -0.62 -4.94 2.92 -173.78 -0.51 -5.45 16 9 C 0.10 0.45 7.35 -3.12 -0.02 0.43 16 10 C -0.14 -0.74 6.77 -25.10 -0.17 -0.91 16 11 C 0.12 1.31 3.23 -67.94 -0.22 1.09 16 12 H 0.12 1.57 7.66 -51.93 -0.40 1.17 16 13 N -0.73 -9.38 5.13 -53.82 -0.28 -9.66 16 14 C 0.51 9.69 7.82 -10.99 -0.09 9.60 16 15 O -0.52 -12.30 15.69 5.55 0.09 -12.22 16 16 C -0.12 -2.45 5.64 -27.88 -0.16 -2.61 16 17 C 0.02 0.67 3.57 -27.88 -0.10 0.57 16 18 C -0.61 -17.71 9.11 -34.44 -0.31 -18.02 16 19 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 20 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 21 N -0.91 -29.19 13.65 55.43 0.76 -28.43 16 22 Si 1.07 25.80 29.90 -169.99 -5.08 20.71 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.51 6.51 7.65 -10.86 -0.08 6.43 16 27 O -0.50 -8.96 17.60 5.56 0.10 -8.86 16 28 C -0.09 -0.87 9.68 -39.64 -0.38 -1.26 16 29 C -0.07 -0.61 9.76 -39.17 -0.38 -0.99 16 30 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 32 H 0.09 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 34 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.38 8.03 -51.93 -0.42 -0.04 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.40 3.78 8.57 -40.82 -0.35 3.43 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.01 0.43 7.96 -51.93 -0.41 0.02 16 42 H 0.01 0.45 7.97 -51.93 -0.41 0.03 16 43 H 0.27 8.89 7.22 -40.82 -0.29 8.59 16 44 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -40.65 396.84 -8.63 -49.28 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.12 Total: -0.92 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -4.34 Total: -5.75 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.75 Total: -48.23 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.19 Total: -21.08 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -40.65 -8.63 -49.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291607042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.360 kcal (2) G-P(sol) polarization free energy of solvation -40.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds