Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39636 * 120.15428 * 249.29850 * 3 2 1 5 5 C 1.37941 * 119.85037 * 180.02562 * 4 3 2 6 6 C 1.38372 * 120.14966 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.84388 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46890 * 90.00032 * 7 6 5 9 9 C 1.46764 * 124.34945 * 269.99281 * 8 7 6 10 10 C 1.54482 * 105.47040 * 196.99502 * 9 8 7 11 11 C 1.54618 * 101.76848 * 334.58869 * 10 9 8 12 12 H 1.08998 * 110.60252 * 143.53245 * 11 10 9 13 13 N 1.46507 * 110.48670 * 266.11809 * 11 10 9 14 14 C 1.34769 * 120.00057 * 201.22711 * 13 11 10 15 15 O 1.21283 * 120.00330 * 359.97438 * 14 13 11 16 16 C 1.50695 * 120.00194 * 179.97438 * 14 13 11 17 17 C 1.53004 * 109.47535 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 C 1.34421 * 124.34692 * 89.97674 * 8 7 6 27 27 O 1.21276 * 124.94434 * 359.56911 * 26 8 7 28 28 C 1.38359 * 120.30479 * 0.27575 * 6 5 4 29 29 C 1.37953 * 120.14973 * 359.48686 * 28 6 5 30 30 H 1.07998 * 120.07334 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.92781 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47352 * 330.00176 * 7 6 5 33 33 H 1.09005 * 109.46940 * 209.99974 * 7 6 5 34 34 H 1.08995 * 110.24270 * 315.99983 * 9 8 7 35 35 H 1.09005 * 110.24208 * 77.91229 * 9 8 7 36 36 H 1.08998 * 110.96518 * 216.46650 * 10 9 8 37 37 H 1.09004 * 110.96329 * 92.71026 * 10 9 8 38 38 H 0.97000 * 119.99595 * 21.23095 * 13 11 10 39 39 H 1.09000 * 109.47335 * 60.00047 * 16 14 13 40 40 H 1.08998 * 109.47423 * 300.00242 * 16 14 13 41 41 H 1.08994 * 109.47074 * 60.00312 * 17 16 14 42 42 H 1.08998 * 109.47285 * 300.00147 * 17 16 14 43 43 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 44 44 H 1.07999 * 119.92352 * 179.72740 * 28 6 5 45 45 H 1.08004 * 120.07109 * 180.25723 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.4278 1.1294 5 6 4.6486 0.4263 1.1224 6 6 5.3374 0.0023 -0.0003 7 6 6.8444 0.0041 -0.0007 8 7 7.3344 -1.2872 0.4881 9 6 7.6112 -1.5882 1.8976 10 6 8.4922 -2.8571 1.8826 11 6 8.0873 -3.5063 0.5390 12 1 8.9492 -3.9754 0.0646 13 7 7.0196 -4.4881 0.7452 14 6 6.8100 -5.4573 -0.1675 15 8 7.5048 -5.5165 -1.1598 16 6 5.7122 -6.4676 0.0448 17 6 5.6886 -7.4494 -1.1285 18 6 4.5903 -8.4593 -0.9164 19 1 3.9708 -8.4059 -0.0334 20 6 4.3764 -9.4513 -1.8497 21 7 5.1311 -9.5167 -2.9247 22 14 3.0145 -10.7027 -1.5872 23 1 2.9918 -11.6557 -2.7258 24 1 3.2609 -11.4449 -0.3247 25 1 1.7080 -10.0020 -1.5027 26 6 7.5878 -2.3486 -0.2969 27 8 7.4371 -2.3746 -1.5000 28 6 4.6490 -0.4173 -1.1247 29 6 3.2695 -0.4256 -1.1296 30 1 2.7328 0.7585 2.0065 31 1 5.1922 0.7568 1.9951 32 1 7.2070 0.8001 0.6498 33 1 7.2073 0.1702 -1.0150 34 1 8.1487 -0.7611 2.3613 35 1 6.6807 -1.7797 2.4321 36 1 8.2493 -3.5105 2.7205 37 1 9.5508 -2.5969 1.8869 38 1 6.4636 -4.4406 1.5386 39 1 4.7529 -5.9538 0.1084 40 1 5.8943 -7.0129 0.9708 41 1 6.6478 -7.9632 -1.1916 42 1 5.5067 -6.9044 -2.0547 43 1 5.8381 -8.8666 -3.0612 44 1 5.1928 -0.7428 -1.9991 45 1 2.7334 -0.7573 -2.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291607042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = -50.347052 kcal Electronic energy + Delta-G solvation = -28621.280237 eV Core-core repulsion = 24602.184681 eV Total energy + Delta-G solvation = -4019.095556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93630 -40.63660 -40.07802 -37.76848 -37.53678 -36.07784 -35.76045 -33.85606 -32.83417 -32.09505 -31.27379 -28.40332 -27.77878 -26.81111 -24.16532 -23.83202 -23.66566 -22.53962 -21.55132 -20.52454 -19.97535 -19.07585 -18.16492 -17.98314 -17.52165 -17.00596 -16.73882 -16.55040 -15.94046 -15.84279 -15.61214 -15.53196 -15.22042 -15.12904 -14.86485 -14.58469 -14.48682 -14.21253 -14.15472 -14.06850 -14.02574 -13.68714 -13.53751 -13.18553 -12.99019 -12.82286 -12.67572 -12.33100 -12.23965 -12.08533 -12.05119 -11.99079 -11.87489 -11.47222 -11.00425 -10.68089 -10.56837 -10.14806 -10.02059 -9.83136 -9.71795 -8.71017 -6.43044 -0.35677 0.35176 1.25181 1.51750 1.52622 1.59878 1.63091 1.73664 1.81328 2.14892 2.37164 2.59707 2.78244 2.88243 3.15686 3.38577 3.45213 3.74905 3.80017 3.90525 3.93450 3.96907 4.22447 4.23939 4.30919 4.34100 4.38107 4.57003 4.60754 4.67877 4.78349 4.83087 4.89153 4.99511 5.01849 5.10937 5.18399 5.26199 5.28872 5.35050 5.38591 5.48368 5.59363 5.81712 5.91607 6.05889 6.15709 6.34508 6.46877 6.50941 7.13001 7.25416 7.43771 8.68700 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008290 B = 0.003113 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.557017 B = 8992.281820 C =11440.708189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.276 3.724 3 C -0.039 4.039 4 C -0.061 4.061 5 C -0.087 4.087 6 C -0.080 4.080 7 C 0.158 3.842 8 N -0.603 5.603 9 C 0.097 3.903 10 C -0.122 4.122 11 C 0.104 3.896 12 H 0.087 0.913 13 N -0.698 5.698 14 C 0.509 3.491 15 O -0.578 6.578 16 C -0.110 4.110 17 C 0.027 3.973 18 C -0.618 4.618 19 H 0.069 0.931 20 C -0.047 4.047 21 N -0.940 5.940 22 Si 1.125 2.875 23 H -0.288 1.288 24 H -0.259 1.259 25 H -0.267 1.267 26 C 0.492 3.508 27 O -0.570 6.570 28 C -0.119 4.119 29 C -0.082 4.082 30 H 0.161 0.839 31 H 0.181 0.819 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.423 0.577 39 H 0.098 0.902 40 H 0.113 0.887 41 H -0.019 1.019 42 H -0.029 1.029 43 H 0.250 0.750 44 H 0.109 0.891 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 27.765 21.622 35.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.039 4.039 3 C -0.043 4.043 4 C -0.081 4.081 5 C -0.105 4.105 6 C -0.082 4.082 7 C 0.037 3.963 8 N -0.337 5.337 9 C -0.024 4.024 10 C -0.160 4.160 11 C -0.004 4.004 12 H 0.105 0.895 13 N -0.354 5.354 14 C 0.297 3.703 15 O -0.456 6.456 16 C -0.150 4.150 17 C -0.010 4.010 18 C -0.656 4.656 19 H 0.087 0.913 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.944 3.056 23 H -0.214 1.214 24 H -0.184 1.184 25 H -0.192 1.192 26 C 0.278 3.722 27 O -0.447 6.447 28 C -0.138 4.138 29 C -0.102 4.102 30 H 0.179 0.821 31 H 0.198 0.802 32 H 0.162 0.838 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.131 0.869 41 H -0.001 1.001 42 H -0.011 1.011 43 H 0.060 0.940 44 H 0.127 0.873 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.734 26.494 19.625 33.182 hybrid contribution 0.919 0.983 -0.584 1.467 sum 4.653 27.477 19.042 33.752 Atomic orbital electron populations 1.81286 1.13498 1.10442 1.08953 1.26047 0.92979 0.92359 0.92465 1.16134 0.83158 1.07427 0.97592 1.21515 0.94860 0.95529 0.96244 1.21355 0.92955 0.98010 0.98208 1.20667 0.96968 0.96802 0.93731 1.20553 0.88326 0.84979 1.02412 1.48409 1.64075 1.11645 1.09556 1.22573 1.01067 0.99001 0.79774 1.23020 1.02688 0.96558 0.93751 1.21706 0.91363 0.87797 0.99580 0.89507 1.45600 1.36394 1.28279 1.25141 1.21379 0.84739 0.82075 0.82067 1.90701 1.49714 1.74744 1.30483 1.21495 0.96674 0.95340 1.01512 1.18847 0.95314 0.93765 0.93117 1.22500 1.18433 1.14836 1.09828 0.91267 1.27704 1.02722 1.01583 0.92297 1.70896 1.20266 1.37763 1.28821 0.82878 0.72538 0.73467 0.76697 1.21364 1.18380 1.19164 1.21776 0.77123 0.86190 0.87135 1.90737 1.54092 1.83405 1.16444 1.21098 0.93626 0.99536 0.99496 1.21212 0.94445 0.97202 0.97371 0.82106 0.80191 0.83827 0.91013 0.85495 0.88667 0.85549 0.86528 0.73831 0.88375 0.86890 1.00067 1.01106 0.94045 0.87325 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.41 18.54 19.00 0.35 -12.06 16 2 C 0.28 5.83 15.33 88.33 1.35 7.19 16 3 C -0.04 -0.63 5.73 -21.36 -0.12 -0.76 16 4 C -0.06 -0.53 9.76 22.54 0.22 -0.31 16 5 C -0.09 -0.47 9.68 22.23 0.22 -0.26 16 6 C -0.08 -0.94 5.47 -19.80 -0.11 -1.05 16 7 C 0.16 1.53 6.05 85.63 0.52 2.05 16 8 N -0.60 -7.72 2.92 -822.30 -2.40 -10.11 16 9 C 0.10 0.23 7.35 86.83 0.64 0.87 16 10 C -0.12 -0.70 6.77 31.65 0.21 -0.49 16 11 C 0.10 2.25 3.23 44.98 0.15 2.39 16 12 H 0.09 2.44 7.66 -2.39 -0.02 2.42 16 13 N -0.70 -17.15 5.13 -442.58 -2.27 -19.42 16 14 C 0.51 19.98 7.82 87.66 0.69 20.67 16 15 O -0.58 -29.75 15.69 -3.04 -0.05 -29.80 16 16 C -0.11 -4.52 5.64 29.85 0.17 -4.35 16 17 C 0.03 1.56 3.57 29.85 0.11 1.66 16 18 C -0.62 -36.43 9.11 25.60 0.23 -36.20 16 19 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 20 C -0.05 -2.83 5.46 84.65 0.46 -2.37 16 21 N -0.94 -63.05 13.65 21.45 0.29 -62.76 16 22 Si 1.12 51.48 29.90 68.60 2.05 53.53 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 C 0.49 12.68 7.65 87.90 0.67 13.36 16 27 O -0.57 -22.28 17.60 -3.02 -0.05 -22.34 16 28 C -0.12 -2.29 9.68 22.23 0.22 -2.08 16 29 C -0.08 -1.55 9.76 22.54 0.22 -1.33 16 30 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.18 -0.63 8.06 -2.91 -0.02 -0.65 16 32 H 0.14 -0.03 8.08 -2.39 -0.02 -0.05 16 33 H 0.07 1.07 7.87 -2.38 -0.02 1.05 16 34 H 0.13 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.10 -0.06 8.14 -2.38 -0.02 -0.08 16 36 H 0.13 0.16 8.03 -2.39 -0.02 0.14 16 37 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.42 6.47 8.57 -92.71 -0.79 5.67 16 39 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H -0.02 -1.20 7.96 -2.39 -0.02 -1.22 16 42 H -0.03 -1.92 7.97 -2.39 -0.02 -1.94 16 43 H 0.25 17.55 7.22 -92.70 -0.67 16.88 16 44 H 0.11 2.69 8.06 -2.91 -0.02 2.66 16 45 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -102.42 396.84 4.10 -98.32 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.33 Total: 5.65 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.84 Total: -1.01 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -4.02 Total: -104.35 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.10 Total: -52.14 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -102.42 4.10 -98.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291607042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.974 kcal (2) G-P(sol) polarization free energy of solvation -102.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds