Wall clock time and date at job start Sat Apr 11 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39777 * 120.08470 * 355.02447 * 3 2 1 5 5 C 1.37692 * 119.91979 * 180.02562 * 4 3 2 6 6 C 1.39106 * 120.08383 * 359.97438 * 5 4 3 7 7 N 1.39540 * 119.92348 * 179.97438 * 6 5 4 8 8 C 1.45744 * 117.94872 * 269.34874 * 7 6 5 9 9 C 1.52921 * 110.49261 * 160.90169 * 8 7 6 10 10 C 1.53334 * 108.68399 * 50.73635 * 9 8 7 11 11 C 1.53066 * 108.42889 * 292.48513 * 10 9 8 12 12 H 1.09000 * 109.33326 * 288.82045 * 11 10 9 13 13 N 1.46494 * 109.40540 * 169.03123 * 11 10 9 14 14 C 1.34776 * 120.00401 * 154.56880 * 13 11 10 15 15 O 1.21281 * 119.99632 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00020 * 180.02562 * 14 13 11 17 17 C 1.53002 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.50692 * 109.46979 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00557 * 0.02562 * 18 17 16 20 20 C 1.37890 * 119.99946 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99745 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99881 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47486 * 270.00544 * 22 20 18 24 24 H 1.48501 * 109.47181 * 149.99985 * 22 20 18 25 25 H 1.48510 * 109.47118 * 30.00589 * 22 20 18 26 26 C 1.33358 * 117.94481 * 89.32309 * 7 6 5 27 27 O 1.21279 * 118.24560 * 2.24616 * 26 7 6 28 28 C 1.39110 * 120.15645 * 0.27398 * 6 5 4 29 29 C 1.37691 * 120.08160 * 359.49380 * 28 6 5 30 30 H 1.07996 * 120.03631 * 0.03678 * 4 3 2 31 31 H 1.07998 * 119.95962 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.30416 * 281.21200 * 8 7 6 33 33 H 1.09009 * 109.30294 * 40.58663 * 8 7 6 34 34 H 1.08995 * 109.60934 * 170.51171 * 9 8 7 35 35 H 1.09008 * 109.60140 * 290.83651 * 9 8 7 36 36 H 1.08998 * 109.66760 * 172.75297 * 10 9 8 37 37 H 1.09000 * 109.67431 * 52.21950 * 10 9 8 38 38 H 0.97009 * 119.99975 * 334.57406 * 13 11 10 39 39 H 1.08999 * 109.47198 * 60.00147 * 16 14 13 40 40 H 1.08997 * 109.47106 * 299.99938 * 16 14 13 41 41 H 1.09005 * 109.46804 * 59.99683 * 17 16 14 42 42 H 1.08998 * 109.46920 * 300.00402 * 17 16 14 43 43 H 0.97002 * 119.99096 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.95707 * 179.74350 * 28 6 5 45 45 H 1.07999 * 120.04291 * 180.27151 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -1.2040 0.1049 5 6 4.6461 -1.1993 0.1051 6 6 5.3394 0.0021 0.0005 7 7 6.7348 0.0029 0.0016 8 6 7.4168 0.1301 1.2833 9 6 8.8638 -0.3513 1.1699 10 6 9.5191 0.3410 -0.0312 11 6 8.8547 -0.1761 -1.3095 12 1 9.1590 -1.2084 -1.4822 13 7 9.2728 0.6508 -2.4441 14 6 9.2637 0.1388 -3.6908 15 8 8.9088 -1.0064 -3.8733 16 6 9.6944 0.9894 -4.8579 17 6 9.5902 0.1746 -6.1487 18 6 10.0203 1.0253 -7.3158 19 1 10.3368 2.0450 -7.1532 20 6 10.0098 0.5018 -8.5914 21 7 10.3856 1.2441 -9.6099 22 14 9.4631 -1.2621 -8.8726 23 1 10.6380 -2.1655 -8.7790 24 1 8.8525 -1.3821 -10.2210 25 1 8.4639 -1.6411 -7.8413 26 6 7.3607 -0.1133 -1.1702 27 8 6.6874 -0.1717 -2.1773 28 6 4.6449 1.2033 -0.0989 29 6 3.2680 1.2060 -0.1045 30 1 2.7316 -2.1371 0.1855 31 1 5.1885 -2.1297 0.1865 32 1 7.4081 1.1749 1.5940 33 1 6.8953 -0.4688 2.0300 34 1 9.4066 -0.0963 2.0800 35 1 8.8795 -1.4316 1.0253 36 1 10.5841 0.1097 -0.0518 37 1 9.3786 1.4192 0.0451 38 1 9.5564 1.5670 -2.2981 39 1 10.7259 1.3102 -4.7126 40 1 9.0482 1.8644 -4.9278 41 1 8.5584 -0.1459 -6.2937 42 1 10.2360 -0.7007 -6.0790 43 1 10.3786 0.8757 -10.5072 44 1 5.1864 2.1346 -0.1757 45 1 2.7295 2.1386 -0.1861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291941364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:59 Heat of formation + Delta-G solvation = -9.235603 kcal Electronic energy + Delta-G solvation = -28611.400455 eV Core-core repulsion = 24594.087625 eV Total energy + Delta-G solvation = -4017.312830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.52096 -39.70624 -38.73593 -36.92977 -36.72479 -35.28819 -33.42978 -32.99796 -31.63323 -31.26720 -30.27404 -29.19181 -26.18841 -25.16381 -23.82733 -23.30055 -22.62851 -21.26464 -19.91545 -19.43709 -19.27765 -17.82245 -17.18824 -16.99471 -16.69734 -16.01879 -15.89692 -15.36818 -15.02060 -14.75012 -14.43995 -14.37255 -14.30102 -14.05151 -14.02674 -13.89675 -13.82461 -13.28827 -13.14533 -12.69717 -12.59554 -12.53706 -12.50372 -12.22799 -11.99323 -11.77254 -11.67937 -11.39906 -11.36287 -10.92384 -10.23934 -10.11536 -9.99706 -9.73559 -9.53096 -9.30577 -9.28292 -9.20445 -9.12687 -8.91382 -8.46686 -5.99458 -3.97732 0.22741 0.87052 2.29124 2.30355 2.42525 2.50937 3.21280 3.36596 3.40483 3.41496 3.48119 3.49066 3.61028 4.19258 4.21210 4.30584 4.35641 4.39196 4.43121 4.55235 4.75572 4.79846 4.88727 4.90705 5.02262 5.10918 5.23252 5.29962 5.36398 5.46025 5.46913 5.50413 5.52745 5.70817 5.80067 5.96136 5.98892 6.10608 6.14443 6.40481 6.50590 6.72718 6.99258 7.09975 7.41063 7.50191 7.69779 7.83399 7.95342 8.53724 8.68580 9.03721 9.64004 11.13359 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.002669 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.318876 B =10487.644262 C =12261.089059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.256 3.744 3 C -0.029 4.029 4 C -0.060 4.060 5 C -0.111 4.111 6 C 0.171 3.829 7 N -0.576 5.576 8 C 0.114 3.886 9 C -0.132 4.132 10 C -0.131 4.131 11 C 0.141 3.859 12 H 0.119 0.881 13 N -0.729 5.729 14 C 0.517 3.483 15 O -0.523 6.523 16 C -0.119 4.119 17 C 0.002 3.998 18 C -0.524 4.524 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.876 3.124 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.260 1.260 26 C 0.501 3.499 27 O -0.500 6.500 28 C -0.109 4.109 29 C -0.060 4.060 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.402 0.598 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.263 0.737 44 H 0.135 0.865 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -0.475 32.001 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.059 4.059 3 C -0.033 4.033 4 C -0.082 4.082 5 C -0.130 4.130 6 C 0.080 3.920 7 N -0.311 5.311 8 C -0.007 4.007 9 C -0.170 4.170 10 C -0.169 4.169 11 C 0.032 3.968 12 H 0.137 0.863 13 N -0.384 5.384 14 C 0.305 3.695 15 O -0.397 6.397 16 C -0.159 4.159 17 C -0.036 4.036 18 C -0.561 4.561 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.703 3.297 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.184 1.184 26 C 0.287 3.713 27 O -0.371 6.371 28 C -0.128 4.128 29 C -0.081 4.081 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.237 0.763 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.153 0.847 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.801 -1.367 31.042 32.037 hybrid contribution 0.302 -0.394 -0.158 0.521 sum -7.499 -1.761 30.884 31.830 Atomic orbital electron populations 1.81272 1.12036 1.07144 1.08741 1.25669 0.92605 0.93903 0.93756 1.16073 0.84376 0.95078 1.07736 1.21049 0.93628 0.96868 0.96608 1.21264 0.93745 0.97992 0.99988 1.17788 0.83503 0.93060 0.97640 1.45115 1.03531 1.74839 1.07573 1.21523 0.93199 1.01968 0.84044 1.21853 0.94197 1.01673 0.99286 1.21976 1.01267 1.01318 0.92307 1.20648 0.88957 0.99440 0.87778 0.86333 1.46010 1.69865 1.16402 1.06083 1.21547 0.75853 0.88489 0.83586 1.90660 1.45521 1.19059 1.84446 1.21648 1.01992 0.99232 0.93025 1.19370 0.97877 0.95405 0.90988 1.21113 1.44616 1.00114 0.90303 0.90944 1.24970 0.94541 0.97725 0.96022 1.69916 1.48395 1.36709 0.99312 0.86806 0.79863 0.85432 0.77554 1.20264 1.21462 1.18422 1.21047 0.91671 0.76313 0.82271 1.90845 1.65611 1.45726 1.34915 1.21252 0.93700 0.98134 0.99744 1.21060 0.93660 0.96928 0.96492 0.84473 0.84684 0.91148 0.90206 0.88787 0.90312 0.89360 0.90295 0.76342 0.89614 0.89603 0.95714 0.96302 0.92762 0.84694 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.00 18.54 41.84 0.78 -4.23 16 2 C 0.26 2.47 15.33 -22.47 -0.34 2.12 16 3 C -0.03 -0.23 5.74 -106.82 -0.61 -0.85 16 4 C -0.06 -0.44 9.75 -39.21 -0.38 -0.82 16 5 C -0.11 -0.88 9.95 -39.46 -0.39 -1.28 16 6 C 0.17 1.50 3.99 -83.70 -0.33 1.17 16 7 N -0.58 -4.84 2.83 -114.63 -0.32 -5.17 16 8 C 0.11 0.47 6.34 -4.49 -0.03 0.44 16 9 C -0.13 -0.44 6.02 -26.60 -0.16 -0.60 16 10 C -0.13 -0.68 5.51 -26.52 -0.15 -0.83 16 11 C 0.14 1.50 2.70 -69.30 -0.19 1.31 16 12 H 0.12 1.44 7.57 -51.93 -0.39 1.05 16 13 N -0.73 -9.27 4.96 -55.15 -0.27 -9.54 16 14 C 0.52 9.52 7.26 -10.99 -0.08 9.44 16 15 O -0.52 -11.88 15.21 4.59 0.07 -11.82 16 16 C -0.12 -2.34 5.64 -27.88 -0.16 -2.50 16 17 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 18 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 19 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 20 C 0.07 2.06 5.47 -17.81 -0.10 1.97 16 21 N -0.90 -28.38 13.96 55.43 0.77 -27.60 16 22 Si 0.88 23.08 27.47 -169.99 -4.67 18.41 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 25 H -0.26 -6.90 6.54 56.52 0.37 -6.53 16 26 C 0.50 6.20 7.17 -11.87 -0.09 6.11 16 27 O -0.50 -9.03 15.50 4.59 0.07 -8.96 16 28 C -0.11 -0.86 9.95 -39.46 -0.39 -1.25 16 29 C -0.06 -0.44 9.75 -39.20 -0.38 -0.82 16 30 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.22 8.08 -51.92 -0.42 -0.20 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 35 H 0.08 0.29 8.13 -51.92 -0.42 -0.13 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 38 H 0.40 3.77 8.59 -40.82 -0.35 3.42 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.02 0.67 7.16 -51.93 -0.37 0.30 16 42 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -40.27 387.15 -8.11 -48.38 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.16 Total: -3.34 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -4.21 Total: -1.97 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.95 Total: -46.54 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.14 Total: -20.77 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.67 Total: 18.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -40.27 -8.11 -48.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291941364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.142 kcal (2) G-P(sol) polarization free energy of solvation -40.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds