Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39778 * 120.08172 * 2.64272 * 3 2 1 5 5 C 1.37695 * 119.91620 * 180.02562 * 4 3 2 6 6 C 1.39098 * 120.08631 * 0.02562 * 5 4 3 7 7 N 1.39549 * 119.92503 * 179.97438 * 6 5 4 8 8 C 1.45755 * 117.94201 * 89.33559 * 7 6 5 9 9 C 1.52923 * 110.48402 * 160.93215 * 8 7 6 10 10 C 1.53342 * 108.67805 * 50.74991 * 9 8 7 11 11 C 1.53070 * 108.42409 * 292.47372 * 10 9 8 12 12 H 1.09003 * 109.39947 * 168.94381 * 11 10 9 13 13 N 1.46506 * 109.39976 * 288.76816 * 11 10 9 14 14 C 1.34775 * 119.99729 * 205.00304 * 13 11 10 15 15 O 1.21272 * 120.00387 * 0.02562 * 14 13 11 16 16 C 1.50709 * 119.99589 * 180.02562 * 14 13 11 17 17 C 1.53004 * 109.46796 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46564 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00231 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99645 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00183 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47270 * 59.99812 * 22 20 18 24 24 H 1.48501 * 109.47274 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47096 * 300.00109 * 22 20 18 26 26 C 1.33348 * 117.94607 * 269.33842 * 7 6 5 27 27 O 1.21279 * 118.24845 * 2.24700 * 26 7 6 28 28 C 1.39102 * 120.15768 * 0.25423 * 6 5 4 29 29 C 1.37701 * 120.08096 * 359.44434 * 28 6 5 30 30 H 1.07994 * 120.03975 * 0.04812 * 4 3 2 31 31 H 1.08005 * 119.95814 * 180.02562 * 5 4 3 32 32 H 1.08994 * 109.30324 * 40.61721 * 8 7 6 33 33 H 1.08997 * 109.30261 * 281.23750 * 8 7 6 34 34 H 1.08996 * 109.60609 * 170.51406 * 9 8 7 35 35 H 1.09009 * 109.60002 * 290.99431 * 9 8 7 36 36 H 1.09001 * 109.67130 * 52.20334 * 10 9 8 37 37 H 1.08998 * 109.67335 * 172.73863 * 10 9 8 38 38 H 0.97000 * 120.00131 * 25.00197 * 13 11 10 39 39 H 1.09004 * 109.46723 * 299.99910 * 16 14 13 40 40 H 1.08999 * 109.47089 * 59.99912 * 16 14 13 41 41 H 1.08992 * 109.47133 * 299.99753 * 17 16 14 42 42 H 1.08999 * 109.47343 * 60.00105 * 17 16 14 43 43 H 0.97004 * 120.00427 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.95841 * 179.72715 * 28 6 5 45 45 H 1.08002 * 120.03999 * 180.27649 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -1.2073 -0.0558 5 6 4.6461 -1.2027 -0.0551 6 6 5.3394 0.0019 0.0016 7 7 6.7349 0.0025 0.0027 8 6 7.4188 0.0479 -1.2836 9 6 8.8653 0.5106 -1.1046 10 6 9.5193 -0.3358 -0.0058 11 6 8.8526 0.0056 1.3291 12 1 9.1617 -0.7179 2.0836 13 7 9.2606 1.3491 1.7473 14 6 9.2411 1.6835 3.0527 15 8 8.8863 0.8722 3.8813 16 6 9.6603 3.0658 3.4828 17 6 9.5458 3.1832 5.0040 18 6 9.9655 4.5652 5.4340 19 1 10.2827 5.2874 4.6962 20 6 9.9447 4.9077 6.7694 21 7 9.5590 4.0282 7.6679 22 14 10.4657 6.6205 7.3027 23 1 9.5846 7.6285 6.6601 24 1 10.3544 6.7346 8.7791 25 1 11.8728 6.8600 6.8928 26 6 7.3589 -0.0384 1.1804 27 8 6.6841 -0.1159 2.1852 28 6 4.6450 1.2056 0.0631 29 6 3.2680 1.2092 0.0565 30 1 2.7316 -2.1429 -0.0997 31 1 5.1886 -2.1356 -0.0985 32 1 6.8980 0.7408 -1.9444 33 1 7.4114 -0.9461 -1.7309 34 1 9.4096 0.3798 -2.0398 35 1 8.8799 1.5613 -0.8143 36 1 9.3793 -1.3942 -0.2258 37 1 10.5841 -0.1091 0.0472 38 1 9.5448 1.9980 1.0846 39 1 10.6927 3.2427 3.1809 40 1 9.0123 3.8050 3.0118 41 1 8.5134 3.0064 5.3054 42 1 10.1935 2.4440 5.4753 43 1 9.5447 4.2690 8.6075 44 1 5.1866 2.1388 0.1114 45 1 2.7296 2.1444 0.0997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291941367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = -11.685659 kcal Electronic energy + Delta-G solvation = -28680.770625 eV Core-core repulsion = 24663.351552 eV Total energy + Delta-G solvation = -4017.419073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49077 -39.65296 -38.65092 -36.89583 -36.71826 -35.20185 -33.43225 -32.77178 -31.58001 -31.02570 -30.20339 -29.13803 -25.85406 -25.09912 -23.94900 -23.24269 -22.47203 -21.79241 -19.84356 -19.38141 -19.10647 -17.73528 -16.97308 -16.88040 -16.50476 -15.86341 -15.71690 -15.30064 -14.98030 -14.85959 -14.48978 -14.42213 -14.32908 -14.04801 -13.96653 -13.77403 -13.54295 -13.32349 -13.10189 -12.75993 -12.59535 -12.50726 -12.22588 -12.15481 -11.75183 -11.72740 -11.51680 -11.33083 -11.15492 -10.90457 -10.61052 -10.20529 -9.94074 -9.65031 -9.47837 -9.23448 -9.22843 -9.17480 -9.01785 -8.84623 -8.30096 -5.93809 -3.98673 0.27657 0.92275 2.29782 2.33203 2.50094 2.56593 3.26588 3.35219 3.39843 3.41379 3.43356 3.52923 3.55838 4.24819 4.29739 4.31163 4.38994 4.44969 4.46874 4.48872 4.80474 4.82920 4.93945 5.01407 5.11879 5.15813 5.30171 5.40776 5.42471 5.49400 5.51510 5.54898 5.62733 5.75960 5.85115 6.01459 6.04717 6.21133 6.21881 6.51479 6.53558 6.87931 7.05082 7.14060 7.74245 7.77109 7.88649 8.01459 8.09643 8.39853 8.75918 9.09769 9.64642 11.17031 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.002585 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.496951 B =10828.397690 C =12552.555362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.257 3.743 3 C -0.030 4.030 4 C -0.062 4.062 5 C -0.110 4.110 6 C 0.170 3.830 7 N -0.575 5.575 8 C 0.116 3.884 9 C -0.137 4.137 10 C -0.134 4.134 11 C 0.141 3.859 12 H 0.119 0.881 13 N -0.733 5.733 14 C 0.507 3.493 15 O -0.508 6.508 16 C -0.127 4.127 17 C 0.037 3.963 18 C -0.528 4.528 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.503 3.497 27 O -0.500 6.500 28 C -0.109 4.109 29 C -0.060 4.060 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.399 0.601 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.136 0.864 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 -10.523 -27.189 29.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.059 4.059 3 C -0.033 4.033 4 C -0.083 4.083 5 C -0.129 4.129 6 C 0.079 3.921 7 N -0.309 5.309 8 C -0.006 4.006 9 C -0.175 4.175 10 C -0.172 4.172 11 C 0.032 3.968 12 H 0.137 0.863 13 N -0.391 5.391 14 C 0.295 3.705 15 O -0.380 6.380 16 C -0.167 4.167 17 C -0.001 4.001 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.527 5.527 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C 0.289 3.711 27 O -0.370 6.370 28 C -0.128 4.128 29 C -0.081 4.081 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.234 0.766 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.154 0.846 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.926 -11.196 -25.743 28.691 hybrid contribution 0.826 1.267 -0.038 1.513 sum -5.100 -9.929 -25.781 28.093 Atomic orbital electron populations 1.81269 1.12039 1.07174 1.08803 1.25673 0.92606 0.93868 0.93719 1.16071 0.84362 0.95009 1.07856 1.21034 0.93631 0.96822 0.96791 1.21234 0.93691 0.97926 1.00079 1.17801 0.83550 0.93038 0.97672 1.45101 1.03504 1.75251 1.07067 1.21500 0.93159 1.02132 0.83815 1.21920 0.94385 1.00796 1.00385 1.22051 1.01248 1.01231 0.92638 1.20775 0.88632 0.88892 0.98459 0.86286 1.46205 1.70558 1.13141 1.09148 1.21703 0.76420 0.91510 0.80879 1.90733 1.44323 1.51858 1.51100 1.21862 1.01366 0.90235 1.03190 1.18901 0.98528 0.96744 0.85893 1.21166 1.45160 0.97979 0.92337 0.92683 1.25027 0.95397 0.97109 0.96841 1.69989 1.47074 1.34261 1.01380 0.86659 0.79048 0.84744 0.77496 1.20274 1.21289 1.20260 1.20984 0.91634 0.76303 0.82147 1.90855 1.65688 1.45239 1.35262 1.21296 0.93759 0.98219 0.99517 1.21073 0.93655 0.96961 0.96382 0.84517 0.84719 0.90278 0.91152 0.88966 0.90581 0.89613 0.89269 0.76581 0.90153 0.90347 0.95748 0.95785 0.92871 0.84626 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.16 18.54 41.84 0.78 -4.38 16 2 C 0.26 2.57 15.33 -22.47 -0.34 2.23 16 3 C -0.03 -0.25 5.74 -106.82 -0.61 -0.86 16 4 C -0.06 -0.46 9.75 -39.20 -0.38 -0.84 16 5 C -0.11 -0.89 9.95 -39.46 -0.39 -1.28 16 6 C 0.17 1.60 3.99 -83.71 -0.33 1.26 16 7 N -0.58 -5.19 2.83 -114.63 -0.32 -5.51 16 8 C 0.12 0.54 6.34 -4.48 -0.03 0.52 16 9 C -0.14 -0.53 5.98 -26.59 -0.16 -0.69 16 10 C -0.13 -0.77 5.59 -26.52 -0.15 -0.92 16 11 C 0.14 1.60 2.68 -69.30 -0.19 1.42 16 12 H 0.12 1.63 7.58 -51.93 -0.39 1.24 16 13 N -0.73 -9.34 4.97 -55.14 -0.27 -9.62 16 14 C 0.51 9.59 7.78 -10.98 -0.09 9.50 16 15 O -0.51 -12.22 15.22 5.55 0.08 -12.13 16 16 C -0.13 -2.52 5.64 -27.88 -0.16 -2.68 16 17 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 18 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 22 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.50 6.60 6.96 -11.87 -0.08 6.51 16 27 O -0.50 -9.44 16.28 5.54 0.09 -9.35 16 28 C -0.11 -0.97 9.95 -39.46 -0.39 -1.37 16 29 C -0.06 -0.48 9.75 -39.20 -0.38 -0.86 16 30 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 31 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.08 0.33 6.96 -51.92 -0.36 -0.03 16 36 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.40 3.64 7.49 -40.82 -0.31 3.34 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -39.88 389.66 -8.37 -48.25 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.09 Total: -2.00 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -4.22 Total: -0.88 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.91 Total: -46.46 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.17 Total: -21.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.88 -8.37 -48.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291941367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.567 kcal (2) G-P(sol) polarization free energy of solvation -39.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds