Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39778 * 120.08172 * 2.64272 * 3 2 1 5 5 C 1.37695 * 119.91620 * 180.02562 * 4 3 2 6 6 C 1.39098 * 120.08631 * 0.02562 * 5 4 3 7 7 N 1.39549 * 119.92503 * 179.97438 * 6 5 4 8 8 C 1.45755 * 117.94201 * 89.33559 * 7 6 5 9 9 C 1.52923 * 110.48402 * 160.93215 * 8 7 6 10 10 C 1.53342 * 108.67805 * 50.74991 * 9 8 7 11 11 C 1.53070 * 108.42409 * 292.47372 * 10 9 8 12 12 H 1.09003 * 109.39947 * 168.94381 * 11 10 9 13 13 N 1.46506 * 109.39976 * 288.76816 * 11 10 9 14 14 C 1.34775 * 119.99729 * 205.00304 * 13 11 10 15 15 O 1.21272 * 120.00387 * 0.02562 * 14 13 11 16 16 C 1.50709 * 119.99589 * 180.02562 * 14 13 11 17 17 C 1.53004 * 109.46796 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46564 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00231 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99645 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00183 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47270 * 59.99812 * 22 20 18 24 24 H 1.48501 * 109.47274 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47096 * 300.00109 * 22 20 18 26 26 C 1.33348 * 117.94607 * 269.33842 * 7 6 5 27 27 O 1.21279 * 118.24845 * 2.24700 * 26 7 6 28 28 C 1.39102 * 120.15768 * 0.25423 * 6 5 4 29 29 C 1.37701 * 120.08096 * 359.44434 * 28 6 5 30 30 H 1.07994 * 120.03975 * 0.04812 * 4 3 2 31 31 H 1.08005 * 119.95814 * 180.02562 * 5 4 3 32 32 H 1.08994 * 109.30324 * 40.61721 * 8 7 6 33 33 H 1.08997 * 109.30261 * 281.23750 * 8 7 6 34 34 H 1.08996 * 109.60609 * 170.51406 * 9 8 7 35 35 H 1.09009 * 109.60002 * 290.99431 * 9 8 7 36 36 H 1.09001 * 109.67130 * 52.20334 * 10 9 8 37 37 H 1.08998 * 109.67335 * 172.73863 * 10 9 8 38 38 H 0.97000 * 120.00131 * 25.00197 * 13 11 10 39 39 H 1.09004 * 109.46723 * 299.99910 * 16 14 13 40 40 H 1.08999 * 109.47089 * 59.99912 * 16 14 13 41 41 H 1.08992 * 109.47133 * 299.99753 * 17 16 14 42 42 H 1.08999 * 109.47343 * 60.00105 * 17 16 14 43 43 H 0.97004 * 120.00427 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.95841 * 179.72715 * 28 6 5 45 45 H 1.08002 * 120.03999 * 180.27649 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -1.2073 -0.0558 5 6 4.6461 -1.2027 -0.0551 6 6 5.3394 0.0019 0.0016 7 7 6.7349 0.0025 0.0027 8 6 7.4188 0.0479 -1.2836 9 6 8.8653 0.5106 -1.1046 10 6 9.5193 -0.3358 -0.0058 11 6 8.8526 0.0056 1.3291 12 1 9.1617 -0.7179 2.0836 13 7 9.2606 1.3491 1.7473 14 6 9.2411 1.6835 3.0527 15 8 8.8863 0.8722 3.8813 16 6 9.6603 3.0658 3.4828 17 6 9.5458 3.1832 5.0040 18 6 9.9655 4.5652 5.4340 19 1 10.2827 5.2874 4.6962 20 6 9.9447 4.9077 6.7694 21 7 9.5590 4.0282 7.6679 22 14 10.4657 6.6205 7.3027 23 1 9.5846 7.6285 6.6601 24 1 10.3544 6.7346 8.7791 25 1 11.8728 6.8600 6.8928 26 6 7.3589 -0.0384 1.1804 27 8 6.6841 -0.1159 2.1852 28 6 4.6450 1.2056 0.0631 29 6 3.2680 1.2092 0.0565 30 1 2.7316 -2.1429 -0.0997 31 1 5.1886 -2.1356 -0.0985 32 1 6.8980 0.7408 -1.9444 33 1 7.4114 -0.9461 -1.7309 34 1 9.4096 0.3798 -2.0398 35 1 8.8799 1.5613 -0.8143 36 1 9.3793 -1.3942 -0.2258 37 1 10.5841 -0.1091 0.0472 38 1 9.5448 1.9980 1.0846 39 1 10.6927 3.2427 3.1809 40 1 9.0123 3.8050 3.0118 41 1 8.5134 3.0064 5.3054 42 1 10.1935 2.4440 5.4753 43 1 9.5447 4.2690 8.6075 44 1 5.1866 2.1388 0.1114 45 1 2.7296 2.1444 0.0997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291941367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = -39.651846 kcal Electronic energy + Delta-G solvation = -28681.983330 eV Core-core repulsion = 24663.351552 eV Total energy + Delta-G solvation = -4018.631778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33997 -40.70637 -39.78636 -37.80076 -37.57545 -36.20314 -35.53189 -33.77010 -32.87136 -32.21876 -30.93863 -30.08332 -27.63614 -25.90562 -24.82162 -23.90345 -23.63552 -23.03670 -21.37903 -20.11362 -19.83192 -18.88457 -18.43911 -17.86787 -17.50243 -17.25321 -16.86096 -16.45252 -16.30352 -15.74581 -15.63135 -15.52229 -15.13242 -15.04265 -14.68290 -14.58884 -14.36765 -14.35153 -14.21720 -14.00535 -13.93592 -13.55851 -13.32750 -13.23140 -13.19215 -12.76630 -12.50951 -12.36717 -12.29380 -11.97502 -11.93733 -11.89795 -11.62068 -11.31572 -11.26620 -10.71894 -10.55596 -10.11503 -10.08903 -9.95819 -9.86673 -8.16816 -6.31597 -0.42530 0.28924 1.26153 1.42309 1.47277 1.52448 1.54978 1.62944 1.78990 1.94262 2.36388 2.48570 2.72009 2.79537 3.15939 3.53799 3.69699 3.81378 3.83384 3.84136 3.94715 4.08175 4.17855 4.32475 4.39358 4.47872 4.52599 4.57111 4.59295 4.73381 4.81890 4.91477 4.93376 5.06011 5.12168 5.13010 5.19650 5.30740 5.36662 5.40815 5.41474 5.50965 5.63504 5.83455 5.86240 6.17644 6.24963 6.34951 6.57311 6.87355 7.09115 7.36887 7.39297 8.95833 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.002585 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.496951 B =10828.397690 C =12552.555362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.281 3.719 3 C -0.039 4.039 4 C -0.053 4.053 5 C -0.114 4.114 6 C 0.153 3.847 7 N -0.560 5.560 8 C 0.104 3.896 9 C -0.132 4.132 10 C -0.122 4.122 11 C 0.137 3.863 12 H 0.087 0.913 13 N -0.704 5.704 14 C 0.508 3.492 15 O -0.572 6.572 16 C -0.116 4.116 17 C 0.042 3.958 18 C -0.542 4.542 19 H 0.079 0.921 20 C -0.010 4.010 21 N -0.940 5.940 22 Si 0.976 3.024 23 H -0.262 1.262 24 H -0.290 1.290 25 H -0.259 1.259 26 C 0.501 3.499 27 O -0.572 6.572 28 C -0.121 4.121 29 C -0.057 4.057 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.422 0.578 39 H 0.113 0.887 40 H 0.102 0.898 41 H -0.026 1.026 42 H -0.018 1.018 43 H 0.262 0.738 44 H 0.138 0.862 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -9.250 -31.079 32.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.034 4.034 3 C -0.042 4.042 4 C -0.074 4.074 5 C -0.133 4.133 6 C 0.062 3.938 7 N -0.291 5.291 8 C -0.016 4.016 9 C -0.169 4.169 10 C -0.160 4.160 11 C 0.029 3.971 12 H 0.105 0.895 13 N -0.362 5.362 14 C 0.296 3.704 15 O -0.449 6.449 16 C -0.155 4.155 17 C 0.004 3.996 18 C -0.580 4.580 19 H 0.097 0.903 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.799 3.201 23 H -0.187 1.187 24 H -0.216 1.216 25 H -0.183 1.183 26 C 0.289 3.711 27 O -0.448 6.448 28 C -0.140 4.140 29 C -0.078 4.078 30 H 0.177 0.823 31 H 0.167 0.833 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.261 0.739 39 H 0.131 0.869 40 H 0.120 0.880 41 H -0.007 1.007 42 H 0.001 0.999 43 H 0.071 0.929 44 H 0.155 0.845 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.256 -9.900 -29.795 31.684 hybrid contribution 0.306 0.790 1.085 1.376 sum -3.950 -9.111 -28.710 30.379 Atomic orbital electron populations 1.81291 1.13266 1.08594 1.10561 1.25807 0.92647 0.92559 0.92377 1.16139 0.83491 0.95691 1.08876 1.21273 0.93502 0.97360 0.95260 1.21398 0.94000 0.98052 0.99897 1.18087 0.83857 0.93769 0.98100 1.45116 1.03644 1.72908 1.07464 1.21952 0.93633 1.04304 0.81706 1.21992 0.93716 1.00050 1.01147 1.22088 1.01630 1.02794 0.89440 1.20937 0.88434 0.86845 1.00924 0.89470 1.45760 1.68549 1.14495 1.07362 1.21492 0.75853 0.90587 0.82465 1.90721 1.47398 1.53369 1.53381 1.21626 1.03988 0.91794 0.98140 1.18681 0.94382 0.95582 0.90938 1.21691 1.44493 0.98644 0.93142 0.90255 1.26192 0.95254 1.02197 0.97057 1.70192 1.48778 1.37212 1.01806 0.85352 0.79525 0.78519 0.76710 1.18690 1.21560 1.18316 1.21214 0.92023 0.75514 0.82375 1.90830 1.67113 1.48928 1.37955 1.21372 0.94147 0.98306 1.00209 1.21226 0.93475 0.97555 0.95513 0.82330 0.83337 0.88403 0.88701 0.85192 0.90743 0.87814 0.87644 0.73911 0.86905 0.88017 1.00748 0.99926 0.92922 0.84451 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.39 18.54 19.00 0.35 -11.04 16 2 C 0.28 5.50 15.33 88.33 1.35 6.85 16 3 C -0.04 -0.61 5.74 -21.29 -0.12 -0.74 16 4 C -0.05 -0.71 9.75 22.51 0.22 -0.49 16 5 C -0.11 -1.70 9.95 22.35 0.22 -1.47 16 6 C 0.15 2.70 3.99 38.33 0.15 2.86 16 7 N -0.56 -9.19 2.83 -635.76 -1.80 -10.98 16 8 C 0.10 0.57 6.34 86.49 0.55 1.12 16 9 C -0.13 -0.39 5.98 30.68 0.18 -0.21 16 10 C -0.12 -0.98 5.59 30.73 0.17 -0.81 16 11 C 0.14 3.04 2.68 44.10 0.12 3.16 16 12 H 0.09 2.53 7.58 -2.39 -0.02 2.52 16 13 N -0.70 -17.32 4.97 -446.76 -2.22 -19.54 16 14 C 0.51 19.76 7.78 87.66 0.68 20.44 16 15 O -0.57 -29.55 15.22 -2.99 -0.05 -29.60 16 16 C -0.12 -4.60 5.64 29.85 0.17 -4.44 16 17 C 0.04 2.38 4.26 29.85 0.13 2.51 16 18 C -0.54 -31.06 9.11 25.60 0.23 -30.82 16 19 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 20 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 21 N -0.94 -61.01 13.29 21.45 0.28 -60.72 16 22 Si 0.98 44.58 29.54 68.60 2.03 46.61 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 C 0.50 13.17 6.96 87.71 0.61 13.78 16 27 O -0.57 -22.84 16.28 -3.01 -0.05 -22.89 16 28 C -0.12 -2.08 9.95 22.35 0.22 -1.86 16 29 C -0.06 -0.88 9.75 22.51 0.22 -0.66 16 30 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.10 0.27 8.08 -2.39 -0.02 0.25 16 33 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.07 0.29 6.96 -2.38 -0.02 0.28 16 36 H 0.10 0.55 8.13 -2.39 -0.02 0.54 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.42 6.48 7.49 -92.71 -0.69 5.78 16 39 H 0.11 3.74 8.14 -2.38 -0.02 3.72 16 40 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 41 H -0.03 -1.71 8.10 -2.39 -0.02 -1.73 16 42 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 43 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 45 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -96.60 389.66 4.45 -92.15 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.33 Total: 6.92 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.57 Total: 9.10 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -3.38 Total: -102.29 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.09 Total: -52.49 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -96.60 4.45 -92.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291941367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.499 kcal (2) G-P(sol) polarization free energy of solvation -96.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds