Wall clock time and date at job start Sat Apr 11 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99723 * 2 1 4 4 H 1.48499 * 109.47243 * 269.99579 * 3 2 1 5 5 H 1.48495 * 109.47310 * 30.00037 * 3 2 1 6 6 H 1.48506 * 109.46850 * 149.99865 * 3 2 1 7 7 C 1.37871 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00322 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99970 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46957 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47056 * 55.00254 * 10 9 7 12 12 N 1.46498 * 109.46836 * 294.99705 * 10 9 7 13 13 C 1.34779 * 119.99669 * 155.00387 * 12 10 9 14 14 O 1.21282 * 119.99697 * 359.97438 * 13 12 10 15 15 C 1.50701 * 119.99934 * 179.97438 * 13 12 10 16 16 C 1.53001 * 109.46827 * 179.97438 * 15 13 12 17 17 N 1.46498 * 109.46562 * 180.02562 * 16 15 13 18 18 C 1.34753 * 120.04442 * 90.00528 * 17 16 15 19 19 N 1.30640 * 121.49162 * 180.23617 * 18 17 16 20 20 C 1.33522 * 121.50646 * 359.46992 * 19 18 17 21 21 C 1.36198 * 119.90919 * 0.51931 * 20 19 18 22 22 C 1.35022 * 120.04122 * 269.97232 * 17 16 15 23 23 O 1.21977 * 120.71199 * 0.02562 * 22 17 16 24 24 C 1.50700 * 109.46704 * 174.99891 * 10 9 7 25 25 C 1.38233 * 120.00067 * 79.72524 * 24 10 9 26 26 C 1.38234 * 119.99849 * 179.78521 * 25 24 10 27 27 C 1.38231 * 120.00182 * 0.44205 * 26 25 24 28 28 C 1.38235 * 119.99908 * 359.81430 * 27 26 25 29 29 C 1.38227 * 120.00034 * 359.97438 * 28 27 26 30 30 H 0.96996 * 120.00225 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.47192 * 59.99711 * 9 7 2 32 32 H 1.09003 * 109.46831 * 299.99605 * 9 7 2 33 33 H 0.96999 * 120.00277 * 335.00145 * 12 10 9 34 34 H 1.09003 * 109.47001 * 60.00235 * 15 13 12 35 35 H 1.09000 * 109.47271 * 299.99917 * 15 13 12 36 36 H 1.08991 * 109.47375 * 60.00143 * 16 15 13 37 37 H 1.09000 * 109.47187 * 300.00042 * 16 15 13 38 38 H 1.08002 * 119.24884 * 359.94503 * 18 17 16 39 39 H 1.07998 * 120.04351 * 180.27054 * 20 19 18 40 40 H 1.07994 * 120.70380 * 179.77418 * 21 20 19 41 41 H 1.07998 * 120.00184 * 0.02562 * 25 24 10 42 42 H 1.08003 * 119.99763 * 180.27673 * 26 25 24 43 43 H 1.07998 * 120.00462 * 179.83673 * 27 26 25 44 44 H 1.08003 * 120.00218 * 179.97438 * 28 27 26 45 45 H 1.08008 * 120.00133 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5873 -3.1753 -0.8411 12 7 3.6336 -3.2917 1.2525 13 6 3.5068 -4.6327 1.3000 14 8 3.7135 -5.2968 0.3064 15 6 3.1082 -5.3067 2.5876 16 6 3.0363 -6.8195 2.3702 17 7 2.6482 -7.4747 3.6217 18 6 1.3459 -7.6802 3.9000 19 7 0.9679 -8.2575 5.0093 20 6 1.8550 -8.6797 5.9136 21 6 3.1871 -8.5018 5.6926 22 6 3.5951 -7.8739 4.4975 23 8 4.7782 -7.6952 4.2603 24 6 5.5235 -2.6382 -0.1223 25 6 6.3085 -2.3916 0.9885 26 6 7.6863 -2.3975 0.8763 27 6 8.2789 -2.6410 -0.3485 28 6 7.4939 -2.8824 -1.4604 29 6 6.1163 -2.8808 -1.3474 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6799 0.8910 32 1 3.8752 -0.6804 -0.8889 33 1 3.4679 -2.7604 2.0470 34 1 2.1320 -4.9386 2.9033 35 1 3.8468 -5.0847 3.3578 36 1 4.0121 -7.1880 2.0542 37 1 2.2974 -7.0412 1.6001 38 1 0.5974 -7.3563 3.1920 39 1 1.5164 -9.1579 6.8208 40 1 3.9155 -8.8350 6.4169 41 1 5.8454 -2.1981 1.9448 42 1 8.2996 -2.2092 1.7451 43 1 9.3553 -2.6431 -0.4368 44 1 7.9569 -3.0723 -2.4175 45 1 5.5029 -3.0698 -2.2160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293299765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:03 Heat of formation + Delta-G solvation = -28.162170 kcal Electronic energy + Delta-G solvation = -28776.641214 eV Core-core repulsion = 24758.507666 eV Total energy + Delta-G solvation = -4018.133548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.84258 -41.12366 -39.80200 -38.70929 -37.08730 -36.55091 -34.68610 -33.15305 -32.00948 -31.90736 -31.66360 -30.96932 -27.33004 -26.23331 -25.36485 -23.90496 -23.61162 -23.25617 -21.68389 -21.17371 -19.37313 -19.05646 -18.84964 -18.19870 -17.82377 -17.28431 -17.21938 -16.78617 -16.57286 -16.23174 -15.97661 -15.49837 -15.45581 -15.38198 -14.85050 -14.57808 -14.51393 -14.21659 -14.10633 -14.07657 -14.00690 -13.82997 -13.65409 -13.51144 -13.04917 -12.55934 -12.44012 -12.38021 -11.95788 -11.75846 -11.73837 -11.60414 -11.40571 -11.29622 -11.07091 -10.90956 -10.74603 -10.02567 -9.78533 -9.60206 -9.56195 -8.27006 -6.30784 -0.33833 0.46892 0.53021 0.79091 1.31407 1.37123 1.39881 1.49040 1.66036 2.32003 2.36131 2.61953 2.93781 3.09239 3.21435 3.51615 3.58658 3.67836 3.83602 3.91640 3.99617 4.01822 4.17853 4.26840 4.29800 4.33126 4.41889 4.51643 4.57861 4.64855 4.70934 4.73246 4.74666 4.86433 5.02075 5.13422 5.16118 5.26811 5.37712 5.52687 5.55100 5.55506 5.62126 5.64390 5.83934 6.15047 6.27176 6.62334 6.70338 6.76245 6.79780 7.28333 7.33619 8.88646 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.003302 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.607027 B = 8477.905383 C =10773.645786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.245 1.245 7 C -0.517 4.517 8 H 0.040 0.960 9 C -0.006 4.006 10 C 0.206 3.794 11 H 0.062 0.938 12 N -0.697 5.697 13 C 0.518 3.482 14 O -0.582 6.582 15 C -0.143 4.143 16 C 0.111 3.889 17 N -0.515 5.515 18 C 0.383 3.617 19 N -0.556 5.556 20 C 0.169 3.831 21 C -0.311 4.311 22 C 0.499 3.501 23 O -0.587 6.587 24 C -0.100 4.100 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.130 4.130 30 H 0.265 0.735 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.410 0.590 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.243 0.757 39 H 0.200 0.800 40 H 0.162 0.838 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 -12.069 9.416 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.555 4.555 8 H 0.058 0.942 9 C -0.043 4.043 10 C 0.101 3.899 11 H 0.081 0.919 12 N -0.346 5.346 13 C 0.304 3.696 14 O -0.463 6.463 15 C -0.184 4.184 16 C -0.011 4.011 17 N -0.230 5.230 18 C 0.101 3.899 19 N -0.278 5.278 20 C 0.029 3.971 21 C -0.335 4.335 22 C 0.301 3.699 23 O -0.470 6.470 24 C -0.101 4.101 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.148 4.148 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.246 0.754 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.259 0.741 39 H 0.217 0.783 40 H 0.179 0.821 41 H 0.141 0.859 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.076 -12.479 8.857 17.303 hybrid contribution 0.625 1.245 -0.069 1.395 sum 8.701 -11.234 8.789 16.708 Atomic orbital electron populations 1.70033 1.08050 1.27974 1.52375 1.25790 0.95373 1.02716 0.94288 0.85853 0.79750 0.79302 0.78899 1.19998 1.21206 1.16883 1.21184 0.90771 0.93166 1.50337 0.94177 1.19738 0.94882 0.91914 0.97790 1.19558 0.89130 0.94324 0.86925 0.91936 1.45846 1.68431 1.06603 1.13765 1.20690 0.76206 0.82385 0.90285 1.90670 1.52589 1.64734 1.38312 1.21855 1.05990 0.94883 0.95630 1.21688 1.04863 0.90989 0.83593 1.46912 1.08894 1.47179 1.19968 1.25991 0.83862 0.85966 0.94084 1.68553 1.36749 1.19003 1.03518 1.23177 0.88296 0.88601 0.96997 1.22997 0.99558 1.11474 0.99518 1.17882 0.85645 0.80681 0.85695 1.90944 1.17692 1.60028 1.78323 1.20424 0.95614 0.99404 0.94708 1.21094 0.94407 1.00291 0.98179 1.21436 0.94319 0.99866 0.98840 1.21472 1.01035 0.99683 0.92492 1.21398 0.92927 0.99785 1.00064 1.21204 0.96021 1.00510 0.97080 0.92569 0.94748 0.95514 0.75434 0.85522 0.88143 0.89797 0.85424 0.74118 0.78319 0.82068 0.85894 0.83912 0.83388 0.83882 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.72 13.96 21.45 0.30 -55.42 16 2 C 0.02 0.87 5.47 84.65 0.46 1.34 16 3 Si 0.94 41.71 27.47 68.60 1.88 43.60 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.25 -10.04 6.54 99.48 0.65 -9.39 16 7 C -0.52 -27.13 9.39 25.60 0.24 -26.89 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.24 3.56 29.85 0.11 -0.13 16 10 C 0.21 7.94 2.11 44.25 0.09 8.03 16 11 H 0.06 2.76 7.44 -2.39 -0.02 2.74 16 12 N -0.70 -23.39 4.04 -446.08 -1.80 -25.19 16 13 C 0.52 16.63 7.79 87.66 0.68 17.31 16 14 O -0.58 -22.72 15.64 -3.04 -0.05 -22.76 16 15 C -0.14 -3.24 6.02 29.85 0.18 -3.06 16 16 C 0.11 2.39 4.67 86.38 0.40 2.79 16 17 N -0.51 -9.96 2.57 -655.04 -1.68 -11.64 16 18 C 0.38 5.22 11.48 180.31 2.07 7.29 16 19 N -0.56 -8.49 10.39 -199.73 -2.08 -10.57 16 20 C 0.17 2.32 11.20 83.96 0.94 3.26 16 21 C -0.31 -5.80 10.07 22.48 0.23 -5.57 16 22 C 0.50 12.58 7.45 84.89 0.63 13.22 16 23 O -0.59 -20.10 16.78 -5.24 -0.09 -20.19 16 24 C -0.10 -3.47 4.91 -19.87 -0.10 -3.57 16 25 C -0.12 -3.69 9.32 22.27 0.21 -3.49 16 26 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 27 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 28 C -0.12 -3.28 10.05 22.27 0.22 -3.05 16 29 C -0.13 -4.21 9.67 22.27 0.22 -3.99 16 30 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 32 H 0.03 1.17 7.57 -2.39 -0.02 1.15 16 33 H 0.41 12.25 8.60 -92.71 -0.80 11.46 16 34 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.08 2.33 7.41 -2.39 -0.02 2.31 16 37 H 0.13 2.22 7.97 -2.39 -0.02 2.20 16 38 H 0.24 1.33 8.03 -2.91 -0.02 1.31 16 39 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.12 3.44 7.73 -2.91 -0.02 3.42 16 42 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 44 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 45 H 0.12 3.75 8.04 -2.91 -0.02 3.73 16 Total: -1.00 -78.33 387.72 3.68 -74.66 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.16 Total: 29.93 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 7.03 Total: -2.41 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -5.26 Total: -102.82 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.14 Total: -42.95 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.60 kcal Total: -78.33 3.68 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293299765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.495 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds