Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99887 * 2 1 4 4 H 1.48500 * 109.46831 * 269.99684 * 3 2 1 5 5 H 1.48497 * 109.47189 * 29.99104 * 3 2 1 6 6 H 1.48493 * 109.47087 * 149.99810 * 3 2 1 7 7 C 1.37878 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99987 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99785 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46818 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46890 * 304.99865 * 10 9 7 12 12 N 1.46497 * 109.46939 * 64.99843 * 10 9 7 13 13 C 1.34784 * 119.99911 * 205.00030 * 12 10 9 14 14 O 1.21281 * 119.99677 * 359.97438 * 13 12 10 15 15 C 1.50694 * 120.00040 * 180.02562 * 13 12 10 16 16 C 1.53002 * 109.47008 * 180.02562 * 15 13 12 17 17 N 1.46500 * 109.47266 * 180.02562 * 16 15 13 18 18 C 1.34743 * 120.04634 * 89.99227 * 17 16 15 19 19 N 1.30645 * 121.49165 * 179.74620 * 18 17 16 20 20 C 1.33516 * 121.50417 * 0.26069 * 19 18 17 21 21 C 1.36191 * 119.91272 * 359.97438 * 20 19 18 22 22 C 1.35028 * 120.03780 * 270.25672 * 17 16 15 23 23 O 1.21977 * 120.70946 * 359.97438 * 22 17 16 24 24 C 1.50694 * 109.46921 * 184.99992 * 10 9 7 25 25 C 1.38237 * 119.99812 * 279.72638 * 24 10 9 26 26 C 1.38234 * 119.99767 * 179.81608 * 25 24 10 27 27 C 1.38232 * 120.00151 * 0.39327 * 26 25 24 28 28 C 1.38234 * 120.00037 * 359.85733 * 27 26 25 29 29 C 1.38232 * 120.00042 * 100.00237 * 24 10 9 30 30 H 0.96999 * 120.00400 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47050 * 60.00361 * 9 7 2 32 32 H 1.09000 * 109.46833 * 300.00155 * 9 7 2 33 33 H 0.96998 * 120.00546 * 24.99677 * 12 10 9 34 34 H 1.08997 * 109.47303 * 60.00271 * 15 13 12 35 35 H 1.08999 * 109.47487 * 299.99989 * 15 13 12 36 36 H 1.08995 * 109.47679 * 60.00034 * 16 15 13 37 37 H 1.09009 * 109.46773 * 299.99708 * 16 15 13 38 38 H 1.08002 * 119.25583 * 0.03270 * 18 17 16 39 39 H 1.08007 * 120.04439 * 179.97438 * 20 19 18 40 40 H 1.08009 * 120.70566 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.00308 * 359.97438 * 25 24 10 42 42 H 1.08002 * 119.99935 * 180.23235 * 26 25 24 43 43 H 1.08002 * 120.00038 * 179.84418 * 27 26 25 44 44 H 1.08001 * 120.00289 * 179.97438 * 28 27 26 45 45 H 1.07996 * 120.00224 * 359.97318 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6365 0.0010 11 1 3.5867 -3.1756 0.8425 12 7 3.6346 -3.2911 -1.2511 13 6 3.5077 -4.6321 -1.2992 14 8 3.7146 -5.2968 -0.3060 15 6 3.1101 -5.3056 -2.5873 16 6 3.0380 -6.8185 -2.3706 17 7 2.6520 -7.4734 -3.6230 18 6 3.5983 -7.8708 -4.4960 19 7 3.2862 -8.4617 -5.6186 20 6 2.0151 -8.6943 -5.9547 21 6 1.0106 -8.3129 -5.1179 22 6 1.3472 -7.6746 -3.9063 23 8 0.4785 -7.3167 -3.1284 24 6 5.5235 -2.6382 0.1254 25 6 6.3094 -2.4023 -0.9871 26 6 7.6870 -2.4001 -0.8722 27 6 8.2787 -2.6419 0.3534 28 6 7.4929 -2.8829 1.4649 29 6 6.1152 -2.8813 1.3508 30 1 -0.4851 0.8400 -0.0004 31 1 3.8745 -0.6799 0.8911 32 1 3.8752 -0.6802 -0.8888 33 1 3.4694 -2.7596 -2.0455 34 1 3.8493 -5.0833 -3.3568 35 1 2.1342 -4.9374 -2.9037 36 1 2.2986 -7.0406 -1.6012 37 1 4.0138 -7.1871 -2.0540 38 1 4.6385 -7.7012 -4.2603 39 1 1.7839 -9.1843 -6.8890 40 1 -0.0220 -8.4951 -5.3768 41 1 5.8472 -2.2171 -1.9454 42 1 8.3010 -2.2121 -1.7406 43 1 9.3550 -2.6427 0.4427 44 1 7.9552 -3.0723 2.4224 45 1 5.5013 -3.0696 2.2191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293299768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = -6.340126 kcal Electronic energy + Delta-G solvation = -28759.043381 eV Core-core repulsion = 24741.856108 eV Total energy + Delta-G solvation = -4017.187273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00495 -39.84104 -38.63668 -37.76883 -36.01649 -35.28780 -32.74073 -31.90133 -31.22075 -30.83137 -30.56454 -29.34893 -26.16221 -25.00891 -24.46310 -22.97268 -22.38182 -21.83581 -20.34291 -19.84723 -18.58993 -17.88486 -17.34276 -17.17331 -16.55950 -16.25058 -16.11331 -15.58278 -15.38539 -14.87298 -14.75121 -14.60385 -14.39069 -14.14839 -13.56853 -13.35793 -13.22842 -13.16483 -13.12409 -12.82483 -12.75117 -12.58660 -12.44091 -11.99009 -11.45189 -11.33575 -11.15184 -10.82259 -10.77239 -10.57349 -10.38707 -10.30432 -10.24501 -9.92747 -9.58647 -9.36421 -8.73985 -8.71398 -8.65348 -8.60377 -8.38219 -6.14046 -4.14831 0.36019 1.59717 1.62949 1.63772 2.17153 2.92610 3.21545 3.31364 3.33480 3.35733 3.59486 3.79093 4.06483 4.27144 4.34503 4.37819 4.59574 4.67660 4.97033 5.03623 5.10213 5.10847 5.18191 5.19369 5.26772 5.29442 5.37949 5.51088 5.60538 5.69743 5.73480 5.76247 5.96771 6.08817 6.15925 6.23432 6.35135 6.36972 6.65589 6.68893 6.70984 6.85320 6.98568 7.22118 7.25742 7.47962 7.60585 7.65711 7.92880 8.39720 8.56849 8.91423 9.46031 10.98588 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008930 B = 0.003311 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.868809 B = 8454.603629 C =10760.139574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.194 3.806 11 H 0.093 0.907 12 N -0.697 5.697 13 C 0.521 3.479 14 O -0.548 6.548 15 C -0.157 4.157 16 C 0.105 3.895 17 N -0.519 5.519 18 C 0.376 3.624 19 N -0.548 5.548 20 C 0.147 3.853 21 C -0.287 4.287 22 C 0.511 3.489 23 O -0.526 6.526 24 C -0.076 4.076 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.133 4.133 28 C -0.122 4.122 29 C -0.107 4.107 30 H 0.264 0.736 31 H 0.034 0.966 32 H 0.018 0.982 33 H 0.402 0.598 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.204 0.796 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.803 -12.891 -9.875 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.090 3.910 11 H 0.111 0.889 12 N -0.346 5.346 13 C 0.306 3.694 14 O -0.427 6.427 15 C -0.198 4.198 16 C -0.018 4.018 17 N -0.236 5.236 18 C 0.092 3.908 19 N -0.271 5.271 20 C 0.009 3.991 21 C -0.312 4.312 22 C 0.310 3.690 23 O -0.402 6.402 24 C -0.077 4.077 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.151 4.151 28 C -0.140 4.140 29 C -0.125 4.125 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.237 0.763 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.220 0.780 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.635 -13.288 -9.238 21.162 hybrid contribution -0.401 1.572 -0.008 1.622 sum 13.234 -11.716 -9.246 19.947 Atomic orbital electron populations 1.69905 1.06280 1.27017 1.50158 1.24993 0.94674 0.98992 0.94403 0.86858 0.80464 0.83907 0.78559 1.20271 1.21268 1.18931 1.21010 0.88627 0.94732 1.51804 0.90600 1.19873 0.97851 0.89708 0.97628 1.19991 0.87630 0.96468 0.86939 0.88862 1.45877 1.68391 1.06058 1.14252 1.20041 0.77106 0.82897 0.89382 1.90690 1.51177 1.64196 1.36604 1.21939 1.05028 0.94994 0.97867 1.21826 1.04282 0.91520 0.84131 1.46974 1.08910 1.47742 1.20000 1.25093 0.95954 0.85882 0.83871 1.68416 1.21312 1.20996 1.16377 1.22649 0.87157 0.91118 0.98226 1.22988 1.02895 1.09067 0.96273 1.17414 0.81367 0.81457 0.88741 1.91026 1.46278 1.52264 1.50666 1.20558 0.96819 0.96890 0.93466 1.20920 0.93358 1.00156 0.98437 1.21054 0.94810 1.01020 0.97414 1.21029 0.99293 1.01608 0.93197 1.21077 0.93826 1.00679 0.98398 1.21054 0.94664 0.99342 0.97475 0.92568 0.94777 0.96331 0.76312 0.88599 0.87779 0.86848 0.87585 0.77993 0.81766 0.82792 0.86516 0.86638 0.86726 0.86464 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.96 55.43 0.77 -25.98 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -13.88 9.39 -34.44 -0.32 -14.21 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.28 3.56 -27.88 -0.10 -0.38 16 10 C 0.19 3.64 2.12 -69.08 -0.15 3.49 16 11 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 12 N -0.70 -11.45 4.02 -54.93 -0.22 -11.67 16 13 C 0.52 8.19 7.79 -10.99 -0.09 8.10 16 14 O -0.55 -10.29 15.64 5.56 0.09 -10.20 16 15 C -0.16 -1.82 6.02 -27.89 -0.17 -1.98 16 16 C 0.10 1.13 4.66 -4.04 -0.02 1.11 16 17 N -0.52 -5.26 2.57 -121.10 -0.31 -5.57 16 18 C 0.38 2.76 11.48 -90.53 -1.04 1.73 16 19 N -0.55 -4.66 10.39 -14.48 -0.15 -4.81 16 20 C 0.15 1.19 11.20 -17.56 -0.20 0.99 16 21 C -0.29 -2.94 10.07 -39.26 -0.40 -3.33 16 22 C 0.51 6.76 7.45 -15.09 -0.11 6.64 16 23 O -0.53 -9.34 16.79 4.94 0.08 -9.26 16 24 C -0.08 -1.26 4.91 -104.63 -0.51 -1.77 16 25 C -0.11 -1.60 9.33 -39.58 -0.37 -1.97 16 26 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 27 C -0.13 -1.65 10.05 -39.59 -0.40 -2.05 16 28 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 29 C -0.11 -1.67 9.67 -39.58 -0.38 -2.05 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 32 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 33 H 0.40 5.99 8.60 -40.82 -0.35 5.64 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.11 1.58 7.42 -51.93 -0.39 1.19 16 37 H 0.11 0.90 7.97 -51.92 -0.41 0.48 16 38 H 0.20 0.65 8.03 -52.49 -0.42 0.23 16 39 H 0.17 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.12 1.53 7.71 -52.49 -0.40 1.13 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.84 8.04 -52.49 -0.42 1.42 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -35.80 387.70 -9.80 -45.61 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.10 Total: 7.85 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -5.14 Total: -7.80 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.09 Total: -48.03 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.17 Total: -19.46 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.80 -9.80 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293299768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.267 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds