Wall clock time and date at job start Sat Apr 11 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47312 * 240.00997 * 3 2 1 5 5 H 1.48502 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46645 * 120.00630 * 3 2 1 7 7 C 1.38655 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00610 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99395 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99684 * 185.06186 * 9 7 2 11 11 C 1.38898 * 120.06914 * 354.48541 * 10 9 7 12 12 C 1.38078 * 119.93512 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.06325 * 359.74738 * 12 11 10 14 14 C 1.38278 * 120.14195 * 0.51104 * 13 12 11 15 15 C 1.50702 * 119.96937 * 179.76671 * 14 13 12 16 16 C 1.50703 * 109.47070 * 269.72566 * 15 14 13 17 17 O 1.21288 * 119.99801 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99870 * 179.97438 * 16 15 14 19 19 C 1.47016 * 125.64811 * 359.97438 * 18 16 15 20 20 C 1.54334 * 107.27080 * 178.97780 * 19 18 16 21 21 C 1.55163 * 102.93748 * 337.80297 * 20 19 18 22 22 H 1.09005 * 111.03507 * 277.41562 * 21 20 19 23 23 N 1.46504 * 110.99954 * 153.57898 * 21 20 19 24 24 C 1.34939 * 126.03949 * 332.80194 * 23 21 20 25 25 C 1.35312 * 107.74871 * 179.97438 * 24 23 21 26 26 C 1.39874 * 107.92008 * 359.97438 * 25 24 23 27 27 N 1.30840 * 108.20009 * 359.74272 * 26 25 24 28 28 C 1.47426 * 125.64584 * 180.02562 * 18 16 15 29 29 C 1.38123 * 120.06553 * 359.48967 * 14 13 12 30 30 H 0.97003 * 119.99961 * 359.97438 * 1 2 3 31 31 H 1.08008 * 120.03814 * 359.95608 * 11 10 9 32 32 H 1.07998 * 119.96998 * 179.97438 * 12 11 10 33 33 H 1.08008 * 119.93182 * 180.27143 * 13 12 11 34 34 H 1.08989 * 109.47232 * 149.72409 * 15 14 13 35 35 H 1.09001 * 109.46578 * 29.71815 * 15 14 13 36 36 H 1.09001 * 109.88089 * 298.38720 * 19 18 16 37 37 H 1.08997 * 109.88540 * 59.55773 * 19 18 16 38 38 H 1.08996 * 110.71880 * 96.16803 * 20 19 18 39 39 H 1.08999 * 110.71699 * 219.44292 * 20 19 18 40 40 H 1.08012 * 126.12585 * 0.02562 * 24 23 21 41 41 H 1.08004 * 126.04150 * 180.02562 * 25 24 23 42 42 H 1.07994 * 125.89925 * 179.97438 * 26 25 24 43 43 H 1.09000 * 110.36927 * 322.93178 * 28 18 16 44 44 H 1.08998 * 110.36793 * 85.14409 * 28 18 16 45 45 H 1.07996 * 120.03590 * 180.27855 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6966 -1.2126 5 1 1.2846 2.7465 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4574 -3.4394 0.0927 12 6 4.2026 -4.5968 0.2014 13 6 3.5688 -5.8197 0.3284 14 6 2.1877 -5.8885 0.3363 15 6 1.5012 -7.2234 0.4695 16 6 1.2653 -7.8059 -0.9002 17 8 1.6193 -7.1967 -1.8874 18 7 0.6609 -9.0037 -1.0281 19 6 0.1838 -9.8453 0.0789 20 6 -0.4585 -11.1023 -0.5449 21 6 -0.8138 -10.6345 -1.9811 22 1 -1.7608 -10.0948 -1.9937 23 7 -0.8458 -11.7674 -2.9094 24 6 -0.1488 -12.9161 -2.7845 25 6 -0.4554 -13.7017 -3.8428 26 6 -1.3716 -13.0095 -4.6415 27 7 -1.6108 -11.8523 -4.0799 28 6 0.3697 -9.6875 -2.3013 29 6 1.4368 -4.7343 0.2279 30 1 -0.4850 0.8401 0.0004 31 1 3.9529 -2.4845 -0.0026 32 1 5.2814 -4.5468 0.1910 33 1 4.1538 -6.7232 0.4177 34 1 0.5461 -7.0917 0.9778 35 1 2.1307 -7.8994 1.0483 36 1 1.0220 -10.1334 0.7133 37 1 -0.5576 -9.3020 0.6647 38 1 0.2546 -11.9262 -0.5730 39 1 -1.3576 -11.3874 0.0013 40 1 0.5312 -13.1644 -1.9830 41 1 -0.0627 -14.6890 -4.0360 42 1 -1.8090 -13.3698 -5.5608 43 1 0.0808 -8.9636 -3.0633 44 1 1.2367 -10.2594 -2.6318 45 1 0.3582 -4.7882 0.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293351179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:08 Heat of formation + Delta-G solvation = 57.135574 kcal Electronic energy + Delta-G solvation = -28003.519031 eV Core-core repulsion = 23989.084271 eV Total energy + Delta-G solvation = -4014.434760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64802 -40.19132 -38.95501 -37.74770 -36.36838 -33.61527 -32.36583 -31.96629 -30.57192 -30.45241 -29.31850 -28.80118 -26.91635 -25.23704 -23.99474 -23.00414 -21.64636 -21.38706 -20.97318 -20.33977 -19.43419 -17.98130 -17.58899 -17.25487 -16.92062 -16.12089 -15.68316 -15.13285 -15.05856 -14.89227 -14.63408 -14.38320 -14.27169 -14.02609 -13.69509 -13.58196 -13.44275 -13.17493 -13.02029 -12.93425 -12.57746 -12.38965 -12.30061 -12.02620 -11.83599 -11.56193 -11.45615 -11.23512 -11.00555 -10.81455 -10.75883 -10.60287 -10.43577 -9.90014 -9.75174 -9.30841 -9.04867 -8.86197 -8.79659 -8.04516 -7.18691 -6.40324 -3.99435 1.51374 1.89324 2.13695 2.42152 2.52603 2.65335 2.87494 3.15935 3.17216 3.19649 3.66801 3.92852 4.00173 4.24926 4.33621 4.47802 4.52151 4.58478 4.72463 4.82632 5.00737 5.06428 5.11737 5.13932 5.17037 5.20856 5.31338 5.34975 5.47585 5.49059 5.49876 5.65965 5.66548 5.76796 5.92279 5.96224 6.20455 6.30270 6.36578 6.63006 6.68133 6.94478 7.10312 7.24939 7.28572 7.36404 7.39815 7.47409 7.85631 8.04539 8.15037 9.05226 9.76029 10.77822 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.001922 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.938458 B =14565.377676 C =15148.267990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.229 4.229 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.036 4.036 15 C -0.086 4.086 16 C 0.532 3.468 17 O -0.510 6.510 18 N -0.628 5.628 19 C 0.103 3.897 20 C -0.140 4.140 21 C 0.148 3.852 22 H 0.121 0.879 23 N -0.363 5.363 24 C 0.054 3.946 25 C -0.273 4.273 26 C 0.045 3.955 27 N -0.292 5.292 28 C 0.101 3.899 29 C -0.174 4.174 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.173 0.827 41 H 0.148 0.852 42 H 0.184 0.816 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -27.634 0.677 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.036 4.036 15 C -0.126 4.126 16 C 0.322 3.678 17 O -0.383 6.383 18 N -0.367 5.367 19 C -0.020 4.020 20 C -0.179 4.179 21 C 0.044 3.956 22 H 0.138 0.862 23 N -0.145 5.145 24 C -0.092 4.092 25 C -0.303 4.303 26 C -0.141 4.141 27 N -0.112 5.112 28 C -0.023 4.023 29 C -0.194 4.194 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.190 0.810 41 H 0.166 0.834 42 H 0.201 0.799 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.990 -25.744 0.131 25.763 hybrid contribution 1.002 -0.108 -0.001 1.008 sum 0.012 -25.852 0.131 25.852 Atomic orbital electron populations 1.70034 1.05927 1.27670 1.46310 1.25278 0.95845 0.98782 0.96650 0.85788 0.78685 0.79835 0.79149 1.19530 1.20312 1.19536 1.21269 0.91753 0.80858 1.52866 0.89169 1.83979 1.34210 1.11367 1.78705 1.19274 0.90260 0.87977 0.92388 1.21182 0.93831 0.98990 1.10867 1.20679 0.98391 0.92317 0.97908 1.20340 0.93257 0.96925 1.11036 1.18648 0.93255 0.91675 1.00054 1.20559 1.02600 0.95791 0.93639 1.20571 0.76508 0.78457 0.92303 1.90793 1.48871 1.58486 1.40128 1.48457 1.61588 1.19747 1.06867 1.22025 0.99379 0.90454 0.90180 1.23085 1.02587 0.98391 0.93810 1.22383 1.01072 0.85269 0.86830 0.86158 1.48524 1.33784 1.13152 1.19066 1.22502 0.98474 0.87363 1.00838 1.21531 1.07395 1.03271 0.98087 1.23953 0.98009 0.91906 1.00282 1.77457 1.16499 1.20864 0.96401 1.22440 0.96274 0.95470 0.88159 1.19939 0.99052 0.89992 1.10381 0.92045 0.85587 0.87445 0.87972 0.88151 0.88340 0.90252 0.90198 0.89331 0.88421 0.81004 0.83445 0.79938 0.89199 0.91024 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 9 O -0.18 -5.27 9.76 0.03 0.00 -5.27 16 10 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.23 -5.22 9.17 -39.40 -0.36 -5.58 16 12 C -0.07 -1.45 10.04 -39.61 -0.40 -1.84 16 13 C -0.20 -3.56 9.70 -39.54 -0.38 -3.95 16 14 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.09 -1.13 5.02 -29.03 -0.15 -1.27 16 16 C 0.53 7.79 7.84 -10.99 -0.09 7.71 16 17 O -0.51 -10.19 16.29 5.55 0.09 -10.10 16 18 N -0.63 -6.57 3.33 -170.51 -0.57 -7.14 16 19 C 0.10 0.60 6.49 -3.06 -0.02 0.58 16 20 C -0.14 -0.62 6.31 -24.89 -0.16 -0.78 16 21 C 0.15 1.14 4.20 -65.77 -0.28 0.87 16 22 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 23 N -0.36 -3.25 3.67 -52.77 -0.19 -3.44 16 24 C 0.05 0.38 10.58 -17.23 -0.18 0.19 16 25 C -0.27 -1.97 10.80 -40.01 -0.43 -2.40 16 26 C 0.04 0.38 12.03 -17.36 -0.21 0.17 16 27 N -0.29 -3.22 12.58 30.62 0.39 -2.83 16 28 C 0.10 1.03 6.60 -2.52 -0.02 1.01 16 29 C -0.17 -3.85 9.65 -39.39 -0.38 -4.23 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.10 1.11 8.08 -51.94 -0.42 0.69 16 35 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.28 6.23 -51.93 -0.32 -0.04 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.17 0.65 6.77 -52.48 -0.36 0.29 16 41 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.09 1.14 8.04 -51.93 -0.42 0.73 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -37.45 381.94 -8.23 -45.68 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.87 Total: 3.43 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -3.57 Total: -16.94 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.38 Total: -38.49 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.37 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.45 -8.23 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293351179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.817 kcal (2) G-P(sol) polarization free energy of solvation -37.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds