Wall clock time and date at job start Sat Apr 11 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86793 * 119.99704 * 2 1 4 4 H 1.48504 * 109.47404 * 240.00293 * 3 2 1 5 5 H 1.48496 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46892 * 120.00375 * 3 2 1 7 7 C 1.38650 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99954 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.35758 * 116.99668 * 185.05715 * 9 7 2 11 11 C 1.38894 * 120.07030 * 354.49227 * 10 9 7 12 12 C 1.38080 * 119.92959 * 179.97438 * 11 10 9 13 13 C 1.38320 * 120.07069 * 359.74443 * 12 11 10 14 14 C 1.38284 * 120.13552 * 0.50730 * 13 12 11 15 15 C 1.50695 * 119.96524 * 179.76324 * 14 13 12 16 16 C 1.50698 * 109.47503 * 269.72963 * 15 14 13 17 17 O 1.21275 * 120.00243 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99950 * 180.02562 * 16 15 14 19 19 C 1.47023 * 125.65002 * 0.02562 * 18 16 15 20 20 C 1.54327 * 107.26843 * 181.02219 * 19 18 16 21 21 C 1.55153 * 102.94447 * 22.19571 * 20 19 18 22 22 H 1.09000 * 111.01154 * 82.60759 * 21 20 19 23 23 N 1.46500 * 111.00381 * 206.42247 * 21 20 19 24 24 C 1.34954 * 126.03571 * 33.26136 * 23 21 20 25 25 C 1.35315 * 107.74464 * 179.83985 * 24 23 21 26 26 C 1.39872 * 107.92124 * 0.42186 * 25 24 23 27 27 N 1.30838 * 108.20153 * 359.73985 * 26 25 24 28 28 C 1.47429 * 125.64687 * 179.71709 * 18 16 15 29 29 C 1.38118 * 120.06799 * 359.49740 * 14 13 12 30 30 H 0.96995 * 120.00352 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.03472 * 359.97438 * 11 10 9 32 32 H 1.08005 * 119.96293 * 179.97438 * 12 11 10 33 33 H 1.07999 * 119.93484 * 180.27902 * 13 12 11 34 34 H 1.09005 * 109.47252 * 149.72419 * 15 14 13 35 35 H 1.09000 * 109.47088 * 29.72669 * 15 14 13 36 36 H 1.09000 * 109.88253 * 300.43866 * 19 18 16 37 37 H 1.09001 * 109.88189 * 61.60780 * 19 18 16 38 38 H 1.09000 * 110.71412 * 140.55436 * 20 19 18 39 39 H 1.08999 * 110.72202 * 263.82454 * 20 19 18 40 40 H 1.07996 * 126.12663 * 359.97438 * 24 23 21 41 41 H 1.08001 * 126.04371 * 180.15523 * 25 24 23 42 42 H 1.07996 * 125.90344 * 179.71721 * 26 25 24 43 43 H 1.09004 * 110.36175 * 274.74813 * 28 18 16 44 44 H 1.08994 * 110.36719 * 37.06507 * 28 18 16 45 45 H 1.08006 * 120.03636 * 180.27814 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4575 -3.4394 0.0926 12 6 4.2026 -4.5968 0.2013 13 6 3.5689 -5.8197 0.3282 14 6 2.1878 -5.8885 0.3361 15 6 1.5014 -7.2234 0.4692 16 6 1.2654 -7.8058 -0.9005 17 8 1.6193 -7.1966 -1.8877 18 7 0.6601 -9.0032 -1.0286 19 6 0.1811 -9.8439 0.0784 20 6 -0.4148 -11.1244 -0.5436 21 6 0.2723 -11.1880 -1.9333 22 1 1.2629 -11.6366 -1.8593 23 7 -0.5589 -11.9134 -2.8972 24 6 -1.9080 -11.9273 -2.9302 25 6 -2.2871 -12.7081 -3.9682 26 6 -1.1303 -13.1956 -4.5851 27 7 -0.0938 -12.7199 -3.9439 28 6 0.3630 -9.6839 -2.3021 29 6 1.4368 -4.7343 0.2277 30 1 -0.4850 0.8400 0.0004 31 1 3.9529 -2.4844 -0.0023 32 1 5.2814 -4.5467 0.1909 33 1 4.1539 -6.7231 0.4175 34 1 0.5462 -7.0917 0.9776 35 1 2.1308 -7.8995 1.0479 36 1 1.0124 -10.1025 0.7341 37 1 -0.5868 -9.3133 0.6414 38 1 -0.1577 -11.9990 0.0540 39 1 -1.4957 -11.0339 -0.6515 40 1 -2.5668 -11.4066 -2.2512 41 1 -3.3034 -12.9211 -4.2652 42 1 -1.0982 -13.8517 -5.4423 43 1 -0.5857 -9.3324 -2.7077 44 1 1.1677 -9.5172 -3.0181 45 1 0.3582 -4.7882 0.2385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293351182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:11 Heat of formation + Delta-G solvation = 56.633794 kcal Electronic energy + Delta-G solvation = -28002.774871 eV Core-core repulsion = 23988.318353 eV Total energy + Delta-G solvation = -4014.456519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64236 -40.19279 -38.95691 -37.74845 -36.37138 -33.61117 -32.36902 -31.96753 -30.56139 -30.44919 -29.32024 -28.79961 -26.91625 -25.24177 -24.00169 -22.97264 -21.64528 -21.41041 -20.98551 -20.33804 -19.44602 -17.95791 -17.59933 -17.23635 -16.92040 -16.14148 -15.62434 -15.15312 -15.06745 -14.88688 -14.61628 -14.38265 -14.26992 -14.07001 -13.72496 -13.49938 -13.47079 -13.18366 -12.99536 -12.96939 -12.54963 -12.41526 -12.30490 -12.04359 -11.83477 -11.56673 -11.45649 -11.23801 -11.02207 -10.81695 -10.76130 -10.60468 -10.43929 -9.89961 -9.74596 -9.31145 -9.05085 -8.85785 -8.80051 -8.04752 -7.18974 -6.40768 -3.99846 1.51156 1.89211 2.13534 2.41863 2.52938 2.64781 2.87719 3.15656 3.16891 3.19305 3.69794 3.91264 3.99838 4.23946 4.35855 4.47695 4.51210 4.58673 4.72286 4.82289 5.00683 5.06393 5.12604 5.13241 5.17573 5.21334 5.31603 5.36529 5.44136 5.49232 5.50308 5.66244 5.67627 5.76565 5.92038 5.96147 6.20230 6.30453 6.36250 6.63274 6.67933 6.94188 7.10038 7.24613 7.28333 7.36049 7.39691 7.47078 7.85397 8.04175 8.14712 9.04843 9.75639 10.77431 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.001929 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.082197 B =14513.071087 C =15115.098857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.229 4.229 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.036 4.036 15 C -0.086 4.086 16 C 0.533 3.467 17 O -0.510 6.510 18 N -0.628 5.628 19 C 0.103 3.897 20 C -0.141 4.141 21 C 0.149 3.851 22 H 0.121 0.879 23 N -0.364 5.364 24 C 0.055 3.945 25 C -0.273 4.273 26 C 0.045 3.955 27 N -0.294 5.294 28 C 0.100 3.900 29 C -0.174 4.174 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.173 0.827 41 H 0.148 0.852 42 H 0.184 0.816 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 -26.021 0.402 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.036 4.036 15 C -0.126 4.126 16 C 0.322 3.678 17 O -0.383 6.383 18 N -0.367 5.367 19 C -0.020 4.020 20 C -0.179 4.179 21 C 0.045 3.955 22 H 0.139 0.861 23 N -0.146 5.146 24 C -0.090 4.090 25 C -0.302 4.302 26 C -0.141 4.141 27 N -0.114 5.114 28 C -0.024 4.024 29 C -0.194 4.194 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.190 0.810 41 H 0.166 0.834 42 H 0.201 0.799 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.812 -25.240 0.006 25.305 hybrid contribution -0.522 0.738 -0.113 0.911 sum -2.334 -24.502 -0.106 24.613 Atomic orbital electron populations 1.70031 1.05929 1.27672 1.46351 1.25276 0.95847 0.98785 0.96654 0.85787 0.78683 0.79826 0.79157 1.19527 1.20315 1.19535 1.21269 0.91758 0.80860 1.52841 0.89170 1.83978 1.34208 1.11367 1.78730 1.19275 0.90263 0.87972 0.92397 1.21182 0.93828 0.98993 1.10859 1.20682 0.98404 0.92315 0.97886 1.20345 0.93257 0.96942 1.10986 1.18648 0.93261 0.91672 1.00054 1.20559 1.02594 0.95800 0.93643 1.20567 0.76355 0.78603 0.92298 1.90790 1.49032 1.58328 1.40136 1.48459 1.61335 1.19999 1.06877 1.22027 0.99614 0.90234 0.90170 1.23094 1.01511 0.98808 0.94518 1.22410 0.95515 0.91325 0.86234 0.86136 1.48518 1.04350 1.37469 1.24247 1.22516 0.85330 1.00813 1.00361 1.21539 1.00118 1.07712 1.00850 1.23941 0.90268 0.99905 0.99984 1.77421 1.23419 1.10106 1.00501 1.22496 1.02818 0.89156 0.87933 1.19936 0.99031 0.89998 1.10410 0.92049 0.85585 0.87434 0.87936 0.88183 0.88302 0.90318 0.90155 0.88514 0.89302 0.80977 0.83410 0.79944 0.90871 0.89273 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.20 9.49 30.88 0.29 -10.91 16 8 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 9 O -0.18 -5.27 9.76 0.02 0.00 -5.27 16 10 C 0.15 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.23 -5.22 9.17 -39.40 -0.36 -5.58 16 12 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.20 -3.56 9.70 -39.53 -0.38 -3.94 16 14 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.09 -1.13 5.02 -29.04 -0.15 -1.27 16 16 C 0.53 7.77 7.84 -10.98 -0.09 7.68 16 17 O -0.51 -10.16 16.29 5.56 0.09 -10.07 16 18 N -0.63 -6.53 3.33 -170.38 -0.57 -7.10 16 19 C 0.10 0.60 6.49 -3.06 -0.02 0.58 16 20 C -0.14 -0.64 6.38 -24.90 -0.16 -0.80 16 21 C 0.15 1.11 4.17 -65.66 -0.27 0.83 16 22 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 23 N -0.36 -3.23 3.64 -52.67 -0.19 -3.42 16 24 C 0.06 0.40 10.57 -17.22 -0.18 0.22 16 25 C -0.27 -2.02 10.80 -40.01 -0.43 -2.46 16 26 C 0.05 0.38 12.03 -17.36 -0.21 0.17 16 27 N -0.29 -3.16 12.58 30.62 0.39 -2.77 16 28 C 0.10 1.01 6.60 -2.41 -0.02 1.00 16 29 C -0.17 -3.84 9.65 -39.40 -0.38 -4.22 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 32 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.33 6.37 -51.93 -0.33 0.00 16 40 H 0.17 0.76 6.97 -52.49 -0.37 0.39 16 41 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 45 H 0.11 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -37.28 382.28 -8.24 -45.52 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.89 Total: 3.50 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -3.57 Total: -17.02 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.39 Total: -38.32 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.09 Total: -15.33 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.28 -8.24 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293351182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.156 kcal (2) G-P(sol) polarization free energy of solvation -37.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds