Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99762 * 2 1 4 4 H 1.48501 * 109.47245 * 270.00146 * 3 2 1 5 5 H 1.48508 * 109.46894 * 29.99916 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99894 * 3 2 1 7 7 C 1.38944 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00270 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00189 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00274 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00168 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47242 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99690 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47442 * 35.00339 * 14 13 12 16 16 C 1.53004 * 109.47029 * 155.00078 * 14 13 12 17 17 N 1.46502 * 109.47085 * 305.00146 * 16 14 13 18 18 C 1.35764 * 119.62246 * 269.72703 * 17 16 14 19 19 C 1.35352 * 120.69964 * 179.71466 * 18 17 16 20 20 C 1.40188 * 119.95057 * 0.53568 * 19 18 17 21 21 C 1.36403 * 119.26379 * 359.74166 * 20 19 18 22 22 C 1.34655 * 119.62885 * 89.99780 * 17 16 14 23 23 O 1.22064 * 119.98223 * 0.02562 * 22 17 16 24 24 C 1.50696 * 109.47403 * 275.00050 * 14 13 12 25 25 C 1.38230 * 120.00309 * 140.00233 * 24 14 13 26 26 C 1.38235 * 120.00326 * 179.97438 * 25 24 14 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38240 * 120.00061 * 0.07178 * 27 26 25 29 29 C 1.38234 * 120.00081 * 359.88514 * 28 27 26 30 30 H 0.97001 * 120.00144 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99554 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46888 * 59.99666 * 12 10 9 33 33 H 1.08997 * 109.47030 * 300.00322 * 12 10 9 34 34 H 1.00899 * 110.99857 * 303.95379 * 13 12 10 35 35 H 1.08996 * 109.47119 * 64.99829 * 16 14 13 36 36 H 1.08995 * 109.47277 * 185.00376 * 16 14 13 37 37 H 1.08001 * 119.65330 * 0.02562 * 18 17 16 38 38 H 1.08004 * 120.02459 * 180.27283 * 19 18 17 39 39 H 1.08001 * 120.37210 * 179.76655 * 20 19 18 40 40 H 1.08005 * 120.34812 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.00376 * 359.97438 * 25 24 14 42 42 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 43 43 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 44 44 H 1.08005 * 120.00107 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00147 * 180.10835 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2441 -4.8629 -0.0011 13 7 2.1987 -5.9794 -0.0004 14 6 1.4984 -7.2707 -0.0003 15 1 0.5855 -7.1891 -0.5902 16 6 2.4049 -8.3425 -0.6092 17 7 2.8408 -7.9144 -1.9408 18 6 2.1010 -8.2488 -3.0289 19 6 2.4803 -7.8599 -4.2686 20 6 3.6545 -7.1132 -4.4392 21 6 4.3995 -6.7829 -3.3453 22 6 3.9737 -7.1984 -2.0721 23 8 4.6310 -6.9101 -1.0848 24 6 1.1495 -7.6529 1.4150 25 6 -0.0729 -8.2356 1.6922 26 6 -0.3928 -8.5867 2.9904 27 6 0.5100 -8.3555 4.0113 28 6 1.7321 -7.7719 3.7343 29 6 2.0524 -7.4216 2.4360 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6177 -4.9205 -0.8913 33 1 0.6170 -4.9209 0.8886 34 1 2.8342 -5.9123 -0.7813 35 1 3.2763 -8.4869 0.0293 36 1 1.8549 -9.2799 -0.6910 37 1 1.1974 -8.8270 -2.9035 38 1 1.8812 -8.1283 -5.1261 39 1 3.9656 -6.8026 -5.4256 40 1 5.3073 -6.2085 -3.4566 41 1 -0.7782 -8.4167 0.8946 42 1 -1.3497 -9.0380 3.2077 43 1 0.2600 -8.6294 5.0257 44 1 2.4373 -7.5908 4.5320 45 1 3.0079 -6.9672 2.2193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337454250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 5.851811 kcal Electronic energy + Delta-G solvation = -29537.136852 eV Core-core repulsion = 25520.478261 eV Total energy + Delta-G solvation = -4016.658591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59032 -39.36986 -38.11060 -36.88582 -36.30635 -34.15385 -33.67857 -31.51014 -31.07581 -30.77239 -29.95775 -28.69994 -26.32163 -24.58759 -23.96729 -23.26732 -22.51892 -22.28496 -20.37405 -19.21600 -17.85690 -17.64348 -17.33499 -16.92981 -16.57227 -16.29840 -15.66085 -15.45718 -14.98291 -14.73088 -14.54825 -14.39077 -14.19764 -14.07851 -13.62197 -13.41240 -13.24197 -13.10525 -12.85088 -12.50068 -12.38357 -12.22358 -11.99174 -11.85358 -11.75412 -11.43660 -11.33324 -11.05398 -10.98142 -10.85288 -10.34507 -10.21662 -10.15522 -9.84747 -9.44227 -8.83728 -8.70226 -8.37155 -8.03483 -7.99909 -7.88896 -6.35553 -3.75822 0.74829 1.36475 1.50721 1.83664 2.53111 3.22114 3.30030 3.37085 3.60946 3.84142 3.97916 4.05871 4.28718 4.35907 4.59097 4.72798 4.81348 4.89333 4.92639 5.05491 5.05956 5.12178 5.15882 5.24548 5.24983 5.30056 5.35864 5.57686 5.60668 5.73706 5.82856 5.87559 5.97249 6.03303 6.04527 6.16397 6.20856 6.32530 6.42428 6.49493 6.63668 6.72455 6.99728 7.08266 7.25365 7.61358 7.71743 8.08045 8.13186 8.68869 9.24865 9.61249 10.13933 10.82488 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.003969 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.280963 B = 7052.249342 C = 9585.701992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.442 3.558 11 O -0.573 6.573 12 C 0.051 3.949 13 N -0.654 5.654 14 C 0.114 3.886 15 H 0.053 0.947 16 C 0.092 3.908 17 N -0.503 5.503 18 C 0.127 3.873 19 C -0.233 4.233 20 C -0.025 4.025 21 C -0.234 4.234 22 C 0.503 3.497 23 O -0.515 6.515 24 C -0.079 4.079 25 C -0.116 4.116 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.126 4.126 29 C -0.075 4.075 30 H 0.270 0.730 31 H 0.391 0.609 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.357 0.643 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.159 0.841 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.149 0.851 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -22.261 -4.439 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.227 3.773 11 O -0.456 6.456 12 C -0.082 4.082 13 N -0.293 5.293 14 C 0.003 3.997 15 H 0.071 0.929 16 C -0.030 4.030 17 N -0.216 5.216 18 C 0.000 4.000 19 C -0.256 4.256 20 C -0.046 4.046 21 C -0.255 4.255 22 C 0.304 3.696 23 O -0.394 6.394 24 C -0.080 4.080 25 C -0.134 4.134 26 C -0.147 4.147 27 C -0.139 4.139 28 C -0.144 4.144 29 C -0.093 4.093 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.183 0.817 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.176 0.824 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.167 0.833 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.791 -21.886 -3.099 22.176 hybrid contribution -0.862 0.944 -0.985 1.614 sum -2.653 -20.942 -4.084 21.501 Atomic orbital electron populations 1.69617 1.05912 1.28005 1.51047 1.25236 0.95618 0.99622 0.97501 0.85870 0.79291 0.80880 0.78331 1.20468 1.20958 1.19396 1.19707 0.93366 0.82233 1.47248 0.87968 1.41844 1.09088 1.04540 1.64852 1.19774 0.88457 0.84634 0.84461 1.90572 1.13530 1.86908 1.54605 1.21727 0.94334 0.91289 1.00842 1.60128 1.17928 0.98481 1.52723 1.20721 0.95471 0.90624 0.92909 0.92889 1.22242 1.01147 0.97259 0.82306 1.45690 1.22280 1.45615 1.08035 1.21929 0.95397 0.96049 0.86579 1.20624 1.00975 1.07604 0.96435 1.21425 0.92288 0.91582 0.99330 1.22238 1.04458 1.07550 0.91299 1.17282 0.80560 0.80023 0.91692 1.91098 1.53358 1.55329 1.39570 1.19655 0.94389 0.99324 0.94622 1.20976 0.96068 0.99570 0.96820 1.21010 0.99385 1.01351 0.92915 1.21145 0.94330 0.99484 0.98925 1.21238 0.96997 0.99222 0.96954 1.21220 1.00368 0.96033 0.91681 0.91986 0.77589 0.94359 0.89652 0.81700 0.87047 0.88421 0.82404 0.83961 0.84915 0.83294 0.86491 0.86407 0.86498 0.86180 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.29 13.05 55.50 0.72 -24.57 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.61 9.68 -14.93 -0.14 -8.75 16 8 H 0.10 3.13 7.16 -52.49 -0.38 2.75 16 9 N -0.57 -15.12 5.29 -10.96 -0.06 -15.18 16 10 C 0.44 11.25 7.82 -10.99 -0.09 11.16 16 11 O -0.57 -16.86 15.78 5.54 0.09 -16.77 16 12 C 0.05 0.99 5.96 -4.97 -0.03 0.96 16 13 N -0.65 -11.88 5.05 -109.22 -0.55 -12.43 16 14 C 0.11 1.49 2.55 -68.87 -0.18 1.31 16 15 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 16 C 0.09 1.02 5.11 -4.04 -0.02 1.00 16 17 N -0.50 -5.92 2.38 -119.77 -0.28 -6.21 16 18 C 0.13 1.06 10.28 -16.84 -0.17 0.88 16 19 C -0.23 -1.88 10.01 -39.88 -0.40 -2.28 16 20 C -0.02 -0.24 10.10 -39.51 -0.40 -0.64 16 21 C -0.23 -3.11 9.99 -39.38 -0.39 -3.51 16 22 C 0.50 7.84 5.76 -15.45 -0.09 7.75 16 23 O -0.51 -10.27 15.21 4.86 0.07 -10.19 16 24 C -0.08 -1.01 4.71 -104.63 -0.49 -1.50 16 25 C -0.12 -1.26 9.67 -39.59 -0.38 -1.64 16 26 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 28 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 29 C -0.07 -1.07 9.32 -39.58 -0.37 -1.44 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.39 9.98 7.90 -40.82 -0.32 9.65 16 32 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.09 1.59 8.00 -51.93 -0.42 1.18 16 34 H 0.36 7.14 4.16 -39.29 -0.16 6.97 16 35 H 0.11 1.45 7.39 -51.93 -0.38 1.07 16 36 H 0.10 0.70 8.01 -51.93 -0.42 0.28 16 37 H 0.16 0.70 8.03 -52.49 -0.42 0.28 16 38 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 41 H 0.12 1.01 8.04 -52.49 -0.42 0.58 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.14 2.25 7.72 -52.49 -0.41 1.84 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -36.69 383.01 -9.52 -46.21 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -5.81 Total: 18.29 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -4.44 Total: -1.64 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.17 Total: -58.39 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: 0.16 Total: -26.96 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.69 -9.52 -46.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337454250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.062 kcal (2) G-P(sol) polarization free energy of solvation -36.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds