Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99762 * 2 1 4 4 H 1.48501 * 109.47245 * 270.00146 * 3 2 1 5 5 H 1.48508 * 109.46894 * 29.99916 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99894 * 3 2 1 7 7 C 1.38944 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00270 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00189 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00274 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00168 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47242 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99690 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47442 * 35.00339 * 14 13 12 16 16 C 1.53004 * 109.47029 * 155.00078 * 14 13 12 17 17 N 1.46502 * 109.47085 * 305.00146 * 16 14 13 18 18 C 1.35764 * 119.62246 * 269.72703 * 17 16 14 19 19 C 1.35352 * 120.69964 * 179.71466 * 18 17 16 20 20 C 1.40188 * 119.95057 * 0.53568 * 19 18 17 21 21 C 1.36403 * 119.26379 * 359.74166 * 20 19 18 22 22 C 1.34655 * 119.62885 * 89.99780 * 17 16 14 23 23 O 1.22064 * 119.98223 * 0.02562 * 22 17 16 24 24 C 1.50696 * 109.47403 * 275.00050 * 14 13 12 25 25 C 1.38230 * 120.00309 * 140.00233 * 24 14 13 26 26 C 1.38235 * 120.00326 * 179.97438 * 25 24 14 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38240 * 120.00061 * 0.07178 * 27 26 25 29 29 C 1.38234 * 120.00081 * 359.88514 * 28 27 26 30 30 H 0.97001 * 120.00144 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99554 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46888 * 59.99666 * 12 10 9 33 33 H 1.08997 * 109.47030 * 300.00322 * 12 10 9 34 34 H 1.00899 * 110.99857 * 303.95379 * 13 12 10 35 35 H 1.08996 * 109.47119 * 64.99829 * 16 14 13 36 36 H 1.08995 * 109.47277 * 185.00376 * 16 14 13 37 37 H 1.08001 * 119.65330 * 0.02562 * 18 17 16 38 38 H 1.08004 * 120.02459 * 180.27283 * 19 18 17 39 39 H 1.08001 * 120.37210 * 179.76655 * 20 19 18 40 40 H 1.08005 * 120.34812 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.00376 * 359.97438 * 25 24 14 42 42 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 43 43 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 44 44 H 1.08005 * 120.00107 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00147 * 180.10835 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2441 -4.8629 -0.0011 13 7 2.1987 -5.9794 -0.0004 14 6 1.4984 -7.2707 -0.0003 15 1 0.5855 -7.1891 -0.5902 16 6 2.4049 -8.3425 -0.6092 17 7 2.8408 -7.9144 -1.9408 18 6 2.1010 -8.2488 -3.0289 19 6 2.4803 -7.8599 -4.2686 20 6 3.6545 -7.1132 -4.4392 21 6 4.3995 -6.7829 -3.3453 22 6 3.9737 -7.1984 -2.0721 23 8 4.6310 -6.9101 -1.0848 24 6 1.1495 -7.6529 1.4150 25 6 -0.0729 -8.2356 1.6922 26 6 -0.3928 -8.5867 2.9904 27 6 0.5100 -8.3555 4.0113 28 6 1.7321 -7.7719 3.7343 29 6 2.0524 -7.4216 2.4360 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6177 -4.9205 -0.8913 33 1 0.6170 -4.9209 0.8886 34 1 2.8342 -5.9123 -0.7813 35 1 3.2763 -8.4869 0.0293 36 1 1.8549 -9.2799 -0.6910 37 1 1.1974 -8.8270 -2.9035 38 1 1.8812 -8.1283 -5.1261 39 1 3.9656 -6.8026 -5.4256 40 1 5.3073 -6.2085 -3.4566 41 1 -0.7782 -8.4167 0.8946 42 1 -1.3497 -9.0380 3.2077 43 1 0.2600 -8.6294 5.0257 44 1 2.4373 -7.5908 4.5320 45 1 3.0079 -6.9672 2.2193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337454250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = -19.820724 kcal Electronic energy + Delta-G solvation = -29538.250097 eV Core-core repulsion = 25520.478261 eV Total energy + Delta-G solvation = -4017.771836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54103 -40.44710 -39.94821 -37.94815 -37.43959 -36.02418 -34.99555 -33.34000 -32.54273 -31.67926 -30.80895 -29.72818 -27.99335 -26.01649 -25.20802 -24.29804 -23.44134 -23.17602 -21.34809 -21.18057 -19.97583 -18.57990 -18.23549 -18.09950 -17.79845 -17.20116 -17.16517 -16.61874 -16.46248 -16.10772 -15.94402 -15.75561 -15.48567 -15.09674 -14.95861 -14.80778 -14.39323 -14.14209 -13.98401 -13.77874 -13.55878 -13.47730 -13.25253 -13.17301 -12.99674 -12.86624 -12.65126 -12.46577 -12.42201 -12.15139 -11.93940 -11.79151 -11.55678 -11.09378 -10.95383 -10.40933 -10.05897 -9.73322 -9.61196 -9.39408 -8.91618 -8.50413 -5.99569 -0.07090 0.47178 0.59751 0.97199 1.34383 1.37844 1.51382 1.65561 1.99017 2.26040 2.68943 2.80210 2.96605 3.15566 3.37143 3.68411 3.79702 3.86065 3.95132 4.01516 4.10708 4.18178 4.23184 4.25649 4.31196 4.34766 4.39353 4.41886 4.48291 4.56655 4.69929 4.73527 4.85129 5.06908 5.15225 5.21357 5.25196 5.36465 5.42131 5.61849 5.67329 5.70080 5.72540 5.90405 6.07178 6.11185 6.18401 6.35173 6.56181 7.05720 7.08548 7.49890 8.07366 8.67141 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.003969 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.280963 B = 7052.249342 C = 9585.701992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.993 3.007 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.277 1.277 7 C -0.337 4.337 8 H 0.073 0.927 9 N -0.570 5.570 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.069 3.931 13 N -0.679 5.679 14 C 0.116 3.884 15 H 0.083 0.917 16 C 0.095 3.905 17 N -0.499 5.499 18 C 0.132 3.868 19 C -0.233 4.233 20 C 0.004 3.996 21 C -0.293 4.293 22 C 0.487 3.513 23 O -0.587 6.587 24 C -0.087 4.087 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.142 4.142 29 C -0.104 4.104 30 H 0.279 0.721 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.346 0.654 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.214 0.786 38 H 0.186 0.814 39 H 0.161 0.839 40 H 0.129 0.871 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.141 0.859 44 H 0.121 0.879 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 -24.236 -6.054 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.091 0.909 9 N -0.207 5.207 10 C 0.220 3.780 11 O -0.508 6.508 12 C -0.063 4.063 13 N -0.317 5.317 14 C 0.006 3.994 15 H 0.101 0.899 16 C -0.026 4.026 17 N -0.210 5.210 18 C 0.006 3.994 19 C -0.255 4.255 20 C -0.018 4.018 21 C -0.315 4.315 22 C 0.291 3.709 23 O -0.473 6.473 24 C -0.089 4.089 25 C -0.127 4.127 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.160 4.160 29 C -0.123 4.123 30 H 0.089 0.911 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.171 0.829 35 H 0.097 0.903 36 H 0.169 0.831 37 H 0.230 0.770 38 H 0.204 0.796 39 H 0.179 0.821 40 H 0.147 0.853 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.158 0.842 44 H 0.139 0.861 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.328 -23.897 -4.742 25.171 hybrid contribution 0.433 1.468 -0.531 1.620 sum -5.894 -22.429 -5.273 23.783 Atomic orbital electron populations 1.69665 1.06722 1.29398 1.50054 1.26020 0.96591 1.02248 0.96043 0.84942 0.77781 0.76834 0.78831 1.19291 1.19025 1.20248 1.19627 0.92527 0.84126 1.50331 0.90919 1.41880 1.09199 1.04552 1.65081 1.20883 0.88268 0.86290 0.82517 1.90545 1.16059 1.87883 1.56334 1.21529 0.93880 0.88484 1.02430 1.60051 1.18451 1.00317 1.52865 1.20882 0.96297 0.88396 0.93853 0.89884 1.22334 1.00129 0.98647 0.81516 1.45670 1.21399 1.44386 1.09502 1.22910 0.96009 0.95046 0.85416 1.21201 1.00172 1.06228 0.97942 1.21870 0.91705 0.89033 0.99210 1.22121 1.06000 1.11253 0.92120 1.17617 0.81413 0.80322 0.91532 1.91043 1.55948 1.58765 1.41513 1.19694 0.95130 1.00160 0.93894 1.21306 0.95183 0.98085 0.98136 1.21450 1.00253 1.00131 0.92419 1.21455 0.93438 0.98534 1.00611 1.21352 0.98317 1.00042 0.96287 1.21038 0.99638 0.98092 0.93495 0.91130 0.76952 0.91676 0.88504 0.82932 0.90338 0.83095 0.76965 0.79630 0.82103 0.85347 0.82990 0.83134 0.84164 0.86142 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 2 C -0.01 -0.50 5.50 84.92 0.47 -0.04 16 3 Si 0.99 44.80 29.55 68.60 2.03 46.83 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.34 -20.37 9.68 84.04 0.81 -19.55 16 8 H 0.07 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -31.52 5.29 -306.99 -1.62 -33.14 16 10 C 0.43 23.14 7.82 87.66 0.69 23.82 16 11 O -0.62 -39.41 15.78 -3.08 -0.05 -39.46 16 12 C 0.07 2.73 5.96 85.56 0.51 3.24 16 13 N -0.68 -25.64 5.05 -499.47 -2.52 -28.16 16 14 C 0.12 2.87 2.55 44.17 0.11 2.98 16 15 H 0.08 1.57 7.66 -2.39 -0.02 1.55 16 16 C 0.10 2.00 5.11 86.38 0.44 2.44 16 17 N -0.50 -11.29 2.38 -650.98 -1.55 -12.84 16 18 C 0.13 1.62 10.28 83.42 0.86 2.48 16 19 C -0.23 -2.77 10.01 22.08 0.22 -2.55 16 20 C 0.00 0.06 10.10 22.32 0.23 0.29 16 21 C -0.29 -8.50 9.99 22.40 0.22 -8.28 16 22 C 0.49 16.42 5.76 84.82 0.49 16.91 16 23 O -0.59 -26.59 15.21 -5.53 -0.08 -26.67 16 24 C -0.09 -2.15 4.71 -19.87 -0.09 -2.25 16 25 C -0.11 -1.94 9.67 22.27 0.22 -1.72 16 26 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 27 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 28 C -0.14 -3.65 10.05 22.27 0.22 -3.43 16 29 C -0.10 -3.16 9.32 22.27 0.21 -2.95 16 30 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.40 20.57 7.90 -92.71 -0.73 19.84 16 32 H 0.07 2.20 8.06 -2.39 -0.02 2.18 16 33 H 0.10 3.57 8.00 -2.39 -0.02 3.56 16 34 H 0.35 14.76 4.16 -89.69 -0.37 14.39 16 35 H 0.08 2.22 7.39 -2.39 -0.02 2.20 16 36 H 0.15 1.50 8.01 -2.39 -0.02 1.48 16 37 H 0.21 0.27 8.03 -2.91 -0.02 0.25 16 38 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 39 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.15 1.64 8.04 -2.91 -0.02 1.62 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.09 3.59 7.72 -2.91 -0.02 3.57 16 Total: -1.00 -90.69 383.01 2.45 -88.23 By element: Atomic # 1 Polarization: 48.60 SS G_CDS: -0.08 Total: 48.52 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 6.05 Total: 7.28 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.41 Total: -124.73 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -0.13 Total: -66.13 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -90.69 2.45 -88.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337454250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.413 kcal (2) G-P(sol) polarization free energy of solvation -90.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds