Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00130 * 2 1 4 4 H 1.48499 * 109.47019 * 239.99826 * 3 2 1 5 5 H 1.48498 * 109.47143 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47128 * 119.99926 * 3 2 1 7 7 C 1.38953 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00150 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99723 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00223 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99174 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00283 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46943 * 179.97438 * 12 10 9 14 14 C 1.46897 * 110.99730 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.47535 * 325.00689 * 14 13 12 16 16 C 1.53004 * 109.47031 * 205.00239 * 14 13 12 17 17 N 1.46500 * 109.47049 * 55.00469 * 16 14 13 18 18 C 1.35765 * 119.62059 * 269.72540 * 17 16 14 19 19 C 1.35349 * 120.69540 * 179.71727 * 18 17 16 20 20 C 1.40196 * 119.95312 * 0.53614 * 19 18 17 21 21 C 1.36398 * 119.26082 * 359.74035 * 20 19 18 22 22 C 1.34657 * 119.62210 * 90.00028 * 17 16 14 23 23 O 1.22051 * 119.99049 * 359.97438 * 22 17 16 24 24 C 1.50706 * 109.46694 * 85.00651 * 14 13 12 25 25 C 1.38233 * 120.00109 * 39.72233 * 24 14 13 26 26 C 1.38237 * 119.99743 * 179.80918 * 25 24 14 27 27 C 1.38233 * 120.00125 * 0.40204 * 26 25 24 28 28 C 1.38238 * 120.00012 * 359.85160 * 27 26 25 29 29 C 1.38235 * 120.00123 * 359.95693 * 28 27 26 30 30 H 0.97003 * 119.99524 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00232 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46580 * 60.00111 * 12 10 9 33 33 H 1.08992 * 109.47231 * 300.00194 * 12 10 9 34 34 H 1.00904 * 110.99809 * 56.04708 * 13 12 10 35 35 H 1.09001 * 109.46815 * 175.00746 * 16 14 13 36 36 H 1.09001 * 109.47178 * 295.00012 * 16 14 13 37 37 H 1.07996 * 119.64797 * 0.02562 * 18 17 16 38 38 H 1.08004 * 120.02462 * 180.27414 * 19 18 17 39 39 H 1.07999 * 120.37107 * 179.76799 * 20 19 18 40 40 H 1.08006 * 120.34875 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99934 * 0.02562 * 25 24 14 42 42 H 1.07999 * 119.99896 * 180.23009 * 26 25 24 43 43 H 1.08002 * 120.00311 * 179.83689 * 27 26 25 44 44 H 1.08000 * 120.00524 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00181 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2436 -4.8630 0.0022 13 7 2.1982 -5.9795 0.0014 14 6 1.4979 -7.2708 0.0026 15 1 0.5853 -7.1887 0.5929 16 6 2.4046 -8.3422 0.6116 17 7 2.8413 -7.9134 1.9426 18 6 3.9866 -7.1963 2.0744 19 6 4.4073 -6.7841 3.2931 20 6 3.6634 -7.1072 4.4366 21 6 2.5160 -7.8324 4.3027 22 6 2.1052 -8.2398 3.0219 23 8 1.0803 -8.8889 2.8877 24 6 1.1481 -7.6537 -1.4124 25 6 2.0477 -7.4170 -2.4350 26 6 1.7284 -7.7719 -3.7323 27 6 0.5063 -8.3559 -4.0083 28 6 -0.3954 -8.5879 -2.9865 29 6 -0.0746 -8.2366 -1.6885 30 1 -0.4849 0.8401 0.0004 31 1 0.3533 -2.3906 0.0016 32 1 0.6167 -4.9208 -0.8876 33 1 0.6173 -4.9205 0.8923 34 1 2.8337 -5.9125 0.7824 35 1 1.8546 -9.2796 0.6941 36 1 3.2757 -8.4872 -0.0275 37 1 4.5653 -6.9479 1.1971 38 1 5.3177 -6.2104 3.3849 39 1 3.9948 -6.7849 5.4127 40 1 1.9295 -8.0914 5.1718 41 1 3.0013 -6.9579 -2.2198 42 1 2.4327 -7.5903 -4.5307 43 1 0.2557 -8.6308 -5.0222 44 1 -1.3504 -9.0438 -3.2020 45 1 -0.7792 -8.4175 -0.8903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337454251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = -0.314046 kcal Electronic energy + Delta-G solvation = -29357.093967 eV Core-core repulsion = 25340.168004 eV Total energy + Delta-G solvation = -4016.925963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59276 -39.43491 -38.23233 -37.03755 -36.34824 -34.19904 -33.75184 -31.61035 -31.17782 -30.80676 -29.97333 -28.74184 -26.44496 -24.55717 -23.89755 -23.60726 -22.49258 -22.31804 -20.41507 -19.32430 -17.94109 -17.66169 -17.35701 -16.96490 -16.62586 -16.31259 -15.72440 -15.50441 -15.01225 -14.91429 -14.63440 -14.47297 -14.26558 -14.11611 -13.70722 -13.61298 -13.27090 -13.17715 -12.78735 -12.55168 -12.32051 -12.23717 -12.20505 -11.88128 -11.75398 -11.52324 -11.44649 -11.10628 -11.03261 -10.91111 -10.46456 -10.26247 -10.23344 -10.00420 -9.52568 -8.85542 -8.74385 -8.54255 -8.24408 -8.05031 -7.99171 -6.43559 -3.84793 0.72102 1.34115 1.47845 1.79985 2.50230 3.18028 3.24308 3.28070 3.54181 3.79903 3.86876 3.98957 4.22154 4.49576 4.55165 4.72100 4.79397 4.86144 4.93585 5.03096 5.05238 5.14166 5.14884 5.21102 5.23781 5.24196 5.38398 5.51749 5.58754 5.68833 5.79009 5.87052 5.93964 5.97929 6.02167 6.11681 6.19231 6.21775 6.40727 6.49396 6.57759 6.64579 6.95166 7.04016 7.07099 7.45548 7.52587 7.93608 8.02705 8.57829 9.14674 9.51170 10.01678 10.73975 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007870 B = 0.003838 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3556.864160 B = 7293.518793 C = 9860.941539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.585 6.585 12 C 0.051 3.949 13 N -0.659 5.659 14 C 0.111 3.889 15 H 0.062 0.938 16 C 0.095 3.905 17 N -0.497 5.497 18 C 0.132 3.868 19 C -0.227 4.227 20 C -0.012 4.012 21 C -0.251 4.251 22 C 0.512 3.488 23 O -0.556 6.556 24 C -0.077 4.077 25 C -0.080 4.080 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.126 4.126 29 C -0.111 4.111 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.346 0.654 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.170 0.830 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 -17.787 0.627 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.228 3.772 11 O -0.470 6.470 12 C -0.081 4.081 13 N -0.294 5.294 14 C 0.000 4.000 15 H 0.080 0.920 16 C -0.027 4.027 17 N -0.209 5.209 18 C 0.005 3.995 19 C -0.250 4.250 20 C -0.034 4.034 21 C -0.272 4.272 22 C 0.314 3.686 23 O -0.439 6.439 24 C -0.078 4.078 25 C -0.098 4.098 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.144 4.144 29 C -0.130 4.130 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.187 0.813 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.164 0.836 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.269 -18.024 -0.148 18.523 hybrid contribution -0.618 1.078 0.877 1.521 sum 3.652 -16.945 0.728 17.350 Atomic orbital electron populations 1.69610 1.05969 1.28324 1.50227 1.25274 0.95622 0.99750 0.97212 0.85915 0.78772 0.80449 0.79062 1.19866 1.20958 1.19892 1.19642 0.93311 0.82172 1.47887 0.87931 1.41849 1.09240 1.04594 1.64010 1.19686 0.88321 0.84568 0.84657 1.90493 1.13606 1.87069 1.55828 1.21713 0.94302 0.90750 1.01367 1.60269 1.18947 0.99358 1.50874 1.20709 0.96488 0.89750 0.93070 0.91999 1.22226 1.00691 0.99099 0.80682 1.45615 1.20793 1.44729 1.09724 1.22147 0.86763 0.90168 1.00375 1.20735 1.04600 1.08561 0.91154 1.21488 0.92074 0.90568 0.99243 1.22108 1.00884 1.07417 0.96821 1.17196 0.84491 0.81946 0.84952 1.90943 1.24639 1.42069 1.86218 1.19588 0.94531 0.99412 0.94262 1.21110 1.00177 0.96758 0.91756 1.21200 0.97030 0.99391 0.96884 1.21148 0.94310 0.99460 0.98928 1.21047 0.99492 1.01044 0.92846 1.21063 0.96173 0.98847 0.96898 0.91767 0.77452 0.89380 0.93903 0.83134 0.87365 0.88008 0.81276 0.83420 0.84783 0.83618 0.84855 0.86189 0.86458 0.86311 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.44 10.34 7.82 -10.98 -0.09 10.25 16 11 O -0.59 -15.20 15.78 5.55 0.09 -15.11 16 12 C 0.05 0.93 5.96 -4.98 -0.03 0.91 16 13 N -0.66 -10.26 5.16 -109.22 -0.56 -10.82 16 14 C 0.11 1.46 2.55 -68.86 -0.18 1.29 16 15 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 16 C 0.09 1.07 5.08 -4.04 -0.02 1.05 16 17 N -0.50 -5.97 2.36 -119.77 -0.28 -6.25 16 18 C 0.13 1.37 7.96 -16.84 -0.13 1.24 16 19 C -0.23 -2.21 10.01 -39.88 -0.40 -2.61 16 20 C -0.01 -0.12 10.10 -39.51 -0.40 -0.52 16 21 C -0.25 -3.00 9.99 -39.38 -0.39 -3.40 16 22 C 0.51 7.31 7.41 -15.45 -0.11 7.19 16 23 O -0.56 -9.67 16.64 4.87 0.08 -9.59 16 24 C -0.08 -0.98 4.71 -104.62 -0.49 -1.47 16 25 C -0.08 -1.01 9.33 -39.58 -0.37 -1.38 16 26 C -0.13 -1.46 10.05 -39.58 -0.40 -1.85 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 28 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 29 C -0.11 -1.34 9.67 -39.58 -0.38 -1.72 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 31 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 32 H 0.09 1.56 8.00 -51.93 -0.42 1.15 16 33 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.35 5.41 4.86 -39.29 -0.19 5.22 16 35 H 0.11 1.26 7.39 -51.93 -0.38 0.87 16 36 H 0.10 0.93 8.01 -51.93 -0.42 0.51 16 37 H 0.17 1.48 7.80 -52.49 -0.41 1.07 16 38 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.13 1.74 7.71 -52.48 -0.40 1.33 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.33 8.04 -52.49 -0.42 0.91 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -33.45 384.29 -9.50 -42.95 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -5.83 Total: 17.71 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -4.43 Total: -2.42 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.18 Total: -55.18 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.17 Total: -24.70 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.45 -9.50 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337454251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.635 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds