Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47009 * 270.00401 * 3 2 1 5 5 H 1.48504 * 109.46736 * 30.00246 * 3 2 1 6 6 H 1.48494 * 109.47052 * 150.00129 * 3 2 1 7 7 C 1.37873 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99925 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00080 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47237 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00476 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99378 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00252 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99756 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47510 * 324.99953 * 14 13 11 16 16 C 1.52999 * 109.46974 * 204.99834 * 14 13 11 17 17 N 1.46501 * 109.47289 * 55.00295 * 16 14 13 18 18 C 1.35761 * 119.62485 * 89.99520 * 17 16 14 19 19 C 1.35346 * 120.70252 * 179.97438 * 18 17 16 20 20 C 1.40196 * 119.94872 * 359.97438 * 19 18 17 21 21 C 1.36400 * 119.26458 * 359.97438 * 20 19 18 22 22 C 1.34659 * 119.62348 * 270.21835 * 17 16 14 23 23 O 1.22061 * 119.98796 * 0.03541 * 22 17 16 24 24 C 1.50700 * 109.46760 * 85.00152 * 14 13 11 25 25 C 1.38230 * 120.00236 * 39.72789 * 24 14 13 26 26 C 1.38238 * 120.00289 * 179.80842 * 25 24 14 27 27 C 1.38239 * 119.99800 * 0.39548 * 26 25 24 28 28 C 1.38237 * 119.99886 * 359.85544 * 27 26 25 29 29 C 1.38235 * 119.99825 * 359.95677 * 28 27 26 30 30 H 0.96995 * 120.00638 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46950 * 60.00338 * 9 7 2 32 32 H 1.08994 * 109.47006 * 300.00077 * 9 7 2 33 33 H 0.97007 * 119.99804 * 0.02562 * 10 9 7 34 34 H 0.96999 * 120.00326 * 0.02562 * 13 11 10 35 35 H 1.09002 * 109.47341 * 294.99803 * 16 14 13 36 36 H 1.08999 * 109.47332 * 175.00122 * 16 14 13 37 37 H 1.08001 * 119.64874 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.02652 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.36756 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.34439 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.00414 * 359.97438 * 25 24 14 42 42 H 1.07999 * 120.00727 * 180.22656 * 26 25 24 43 43 H 1.07995 * 120.00457 * 179.83378 * 27 26 25 44 44 H 1.08001 * 120.00195 * 179.97438 * 28 27 26 45 45 H 1.08004 * 120.00126 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5751 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1151 -1.8972 -0.0005 13 7 5.7743 -4.0920 -0.0013 14 6 7.2147 -4.3597 -0.0018 15 1 7.7255 -3.5983 -0.5913 16 6 7.4770 -5.7381 -0.6118 17 7 6.8698 -5.8066 -1.9433 18 6 7.5931 -5.4359 -3.0307 19 6 7.0540 -5.4910 -4.2709 20 6 5.7352 -5.9350 -4.4417 21 6 5.0103 -6.3080 -3.3481 22 6 5.5989 -6.2322 -2.0741 23 8 4.9597 -6.5575 -1.0865 24 6 7.7315 -4.3300 1.4134 25 6 6.9809 -4.8810 2.4351 26 6 7.4568 -4.8573 3.7328 27 6 8.6797 -4.2753 4.0100 28 6 9.4280 -3.7197 2.9890 29 6 8.9538 -3.7469 1.6908 30 1 -0.4851 0.8400 0.0004 31 1 3.8752 -0.6803 0.8889 32 1 3.8745 -0.6799 -0.8911 33 1 3.3696 -3.3125 -0.0010 34 1 5.1440 -4.8294 -0.0021 35 1 7.0412 -6.5068 0.0263 36 1 8.5517 -5.9005 -0.6939 37 1 8.6096 -5.0934 -2.9047 38 1 7.6392 -5.1931 -5.1283 39 1 5.2984 -5.9821 -5.4282 40 1 3.9928 -6.6524 -3.4595 41 1 6.0238 -5.3324 2.2192 42 1 6.8721 -5.2911 4.5305 43 1 9.0503 -4.2544 5.0241 44 1 10.3832 -3.2646 3.2056 45 1 9.5385 -3.3131 0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337817606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 2.291173 kcal Electronic energy + Delta-G solvation = -29656.044325 eV Core-core repulsion = 25639.231334 eV Total energy + Delta-G solvation = -4016.812992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.67876 -39.78960 -38.71430 -37.05411 -36.05956 -34.21001 -33.73581 -32.34672 -31.29707 -30.84678 -30.07454 -28.75528 -27.48575 -24.82236 -23.80513 -22.75218 -22.46491 -22.15862 -20.84467 -20.07558 -18.37255 -17.84724 -17.39646 -17.01009 -16.54122 -16.41893 -16.19092 -15.60723 -15.27910 -14.79053 -14.74541 -14.54502 -14.32846 -14.21224 -13.66272 -13.47290 -13.42634 -13.29388 -12.98347 -12.66671 -12.47180 -12.39160 -12.27334 -12.12077 -11.99972 -11.69940 -11.28084 -11.04425 -10.92243 -10.72118 -10.34015 -10.08125 -9.91430 -9.53977 -9.38630 -8.98101 -8.91597 -8.75021 -8.68617 -8.14397 -7.94187 -6.14777 -4.16027 0.65053 1.26583 1.38820 1.70293 2.39402 3.25489 3.31538 3.38455 3.47266 3.47376 3.74314 3.86491 4.29480 4.38296 4.39452 4.56384 4.70196 4.75908 4.83303 4.91630 4.99012 5.01825 5.08173 5.09185 5.14341 5.20030 5.20613 5.44225 5.48948 5.65846 5.77345 5.87107 5.93001 6.00845 6.11272 6.30083 6.41482 6.47394 6.50767 6.80226 6.81431 6.91400 6.96043 7.18008 7.32105 7.49528 7.65272 7.89364 8.36029 8.77598 8.89539 9.29044 9.47294 10.97375 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007674 B = 0.004266 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.875976 B = 6562.210020 C = 9055.165665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.240 3.760 10 N -0.721 5.721 11 C 0.697 3.303 12 O -0.604 6.604 13 N -0.749 5.749 14 C 0.195 3.805 15 H 0.098 0.902 16 C 0.085 3.915 17 N -0.490 5.490 18 C 0.132 3.868 19 C -0.231 4.231 20 C -0.017 4.017 21 C -0.240 4.240 22 C 0.518 3.482 23 O -0.553 6.553 24 C -0.094 4.094 25 C -0.095 4.095 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.123 4.123 29 C -0.101 4.101 30 H 0.267 0.733 31 H 0.022 0.978 32 H 0.017 0.983 33 H 0.393 0.607 34 H 0.405 0.595 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.161 0.839 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.441 -15.657 -3.841 26.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.118 3.882 10 N -0.373 5.373 11 C 0.397 3.603 12 O -0.484 6.484 13 N -0.410 5.410 14 C 0.087 3.913 15 H 0.116 0.884 16 C -0.037 4.037 17 N -0.200 5.200 18 C 0.005 3.995 19 C -0.254 4.254 20 C -0.039 4.039 21 C -0.262 4.262 22 C 0.321 3.679 23 O -0.436 6.436 24 C -0.096 4.096 25 C -0.114 4.114 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.141 4.141 29 C -0.120 4.120 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.226 0.774 34 H 0.244 0.756 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.179 0.821 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 21.533 -14.873 -3.186 26.363 hybrid contribution -0.286 0.439 -0.071 0.529 sum 21.247 -14.433 -3.257 25.891 Atomic orbital electron populations 1.69881 1.06179 1.27304 1.49763 1.24768 0.94762 0.99058 0.93981 0.86825 0.80630 0.83296 0.78985 1.19897 1.20947 1.18498 1.21113 0.88588 0.95210 1.52881 0.90276 1.19331 0.94809 0.77650 0.96449 1.45387 1.03753 1.11005 1.77133 1.16094 0.83610 0.82635 0.77988 1.90840 1.55330 1.43234 1.58977 1.45452 1.06350 1.07692 1.81554 1.19844 0.82895 0.95695 0.92823 0.88381 1.22396 0.99787 0.98889 0.82632 1.45472 1.13624 1.52996 1.07924 1.21960 0.97390 0.93672 0.86448 1.20661 0.97356 1.10846 0.96526 1.21459 0.93114 0.89905 0.99431 1.22165 1.02753 1.09990 0.91262 1.17149 0.80273 0.78995 0.91484 1.90881 1.60507 1.52104 1.40125 1.20088 0.95024 0.99196 0.95279 1.21000 0.99262 0.98594 0.92515 1.21143 0.96225 0.99999 0.96582 1.21150 0.95100 0.98476 0.99044 1.21084 1.00058 1.00095 0.92895 1.20969 0.95578 0.98474 0.96973 0.92342 0.96024 0.96536 0.77392 0.75577 0.87323 0.87411 0.82143 0.83801 0.84804 0.83304 0.86037 0.86095 0.86285 0.86142 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.96 55.43 0.77 -26.52 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 3 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 7 C -0.54 -15.54 9.83 -34.44 -0.34 -15.88 16 8 H 0.08 2.39 7.84 -52.49 -0.41 1.97 16 9 C 0.24 6.32 4.50 -5.19 -0.02 6.29 16 10 N -0.72 -16.33 5.55 -66.41 -0.37 -16.70 16 11 C 0.70 14.79 8.52 -86.92 -0.74 14.05 16 12 O -0.60 -14.69 16.01 5.29 0.08 -14.60 16 13 N -0.75 -12.24 3.71 -59.81 -0.22 -12.46 16 14 C 0.20 2.48 2.48 -69.08 -0.17 2.31 16 15 H 0.10 1.33 7.44 -51.93 -0.39 0.94 16 16 C 0.09 0.79 5.06 -4.04 -0.02 0.77 16 17 N -0.49 -5.01 2.49 -119.77 -0.30 -5.31 16 18 C 0.13 1.00 10.28 -16.84 -0.17 0.83 16 19 C -0.23 -1.70 10.01 -39.88 -0.40 -2.10 16 20 C -0.02 -0.15 10.10 -39.51 -0.40 -0.55 16 21 C -0.24 -2.75 9.99 -39.38 -0.39 -3.14 16 22 C 0.52 6.82 6.69 -15.45 -0.10 6.72 16 23 O -0.55 -8.82 14.33 4.86 0.07 -8.75 16 24 C -0.09 -1.20 4.91 -104.63 -0.51 -1.71 16 25 C -0.10 -1.24 9.33 -39.58 -0.37 -1.61 16 26 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 28 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 29 C -0.10 -1.17 9.67 -39.58 -0.38 -1.55 16 30 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 32 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 33 H 0.39 8.30 8.34 -40.82 -0.34 7.96 16 34 H 0.40 6.58 5.77 -40.82 -0.24 6.35 16 35 H 0.11 1.10 7.39 -51.93 -0.38 0.72 16 36 H 0.11 0.60 8.01 -51.93 -0.42 0.18 16 37 H 0.16 0.63 8.04 -52.49 -0.42 0.21 16 38 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.12 1.61 7.71 -52.48 -0.40 1.21 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.17 8.04 -52.48 -0.42 0.75 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -37.19 381.24 -10.10 -47.29 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.89 Total: 12.42 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -5.32 Total: 1.38 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.12 Total: -60.99 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.15 Total: -23.36 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.19 -10.10 -47.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337817606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.581 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds