Wall clock time and date at job start Sat Apr 11 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47009 * 270.00401 * 3 2 1 5 5 H 1.48504 * 109.46736 * 30.00246 * 3 2 1 6 6 H 1.48494 * 109.47052 * 150.00129 * 3 2 1 7 7 C 1.37873 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99925 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00080 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47237 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00476 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99378 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00252 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99756 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47510 * 324.99953 * 14 13 11 16 16 C 1.52999 * 109.46974 * 204.99834 * 14 13 11 17 17 N 1.46501 * 109.47289 * 55.00295 * 16 14 13 18 18 C 1.35761 * 119.62485 * 89.99520 * 17 16 14 19 19 C 1.35346 * 120.70252 * 179.97438 * 18 17 16 20 20 C 1.40196 * 119.94872 * 359.97438 * 19 18 17 21 21 C 1.36400 * 119.26458 * 359.97438 * 20 19 18 22 22 C 1.34659 * 119.62348 * 270.21835 * 17 16 14 23 23 O 1.22061 * 119.98796 * 0.03541 * 22 17 16 24 24 C 1.50700 * 109.46760 * 85.00152 * 14 13 11 25 25 C 1.38230 * 120.00236 * 39.72789 * 24 14 13 26 26 C 1.38238 * 120.00289 * 179.80842 * 25 24 14 27 27 C 1.38239 * 119.99800 * 0.39548 * 26 25 24 28 28 C 1.38237 * 119.99886 * 359.85544 * 27 26 25 29 29 C 1.38235 * 119.99825 * 359.95677 * 28 27 26 30 30 H 0.96995 * 120.00638 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46950 * 60.00338 * 9 7 2 32 32 H 1.08994 * 109.47006 * 300.00077 * 9 7 2 33 33 H 0.97007 * 119.99804 * 0.02562 * 10 9 7 34 34 H 0.96999 * 120.00326 * 0.02562 * 13 11 10 35 35 H 1.09002 * 109.47341 * 294.99803 * 16 14 13 36 36 H 1.08999 * 109.47332 * 175.00122 * 16 14 13 37 37 H 1.08001 * 119.64874 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.02652 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.36756 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.34439 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.00414 * 359.97438 * 25 24 14 42 42 H 1.07999 * 120.00727 * 180.22656 * 26 25 24 43 43 H 1.07995 * 120.00457 * 179.83378 * 27 26 25 44 44 H 1.08001 * 120.00195 * 179.97438 * 28 27 26 45 45 H 1.08004 * 120.00126 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5751 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1151 -1.8972 -0.0005 13 7 5.7743 -4.0920 -0.0013 14 6 7.2147 -4.3597 -0.0018 15 1 7.7255 -3.5983 -0.5913 16 6 7.4770 -5.7381 -0.6118 17 7 6.8698 -5.8066 -1.9433 18 6 7.5931 -5.4359 -3.0307 19 6 7.0540 -5.4910 -4.2709 20 6 5.7352 -5.9350 -4.4417 21 6 5.0103 -6.3080 -3.3481 22 6 5.5989 -6.2322 -2.0741 23 8 4.9597 -6.5575 -1.0865 24 6 7.7315 -4.3300 1.4134 25 6 6.9809 -4.8810 2.4351 26 6 7.4568 -4.8573 3.7328 27 6 8.6797 -4.2753 4.0100 28 6 9.4280 -3.7197 2.9890 29 6 8.9538 -3.7469 1.6908 30 1 -0.4851 0.8400 0.0004 31 1 3.8752 -0.6803 0.8889 32 1 3.8745 -0.6799 -0.8911 33 1 3.3696 -3.3125 -0.0010 34 1 5.1440 -4.8294 -0.0021 35 1 7.0412 -6.5068 0.0263 36 1 8.5517 -5.9005 -0.6939 37 1 8.6096 -5.0934 -2.9047 38 1 7.6392 -5.1931 -5.1283 39 1 5.2984 -5.9821 -5.4282 40 1 3.9928 -6.6524 -3.4595 41 1 6.0238 -5.3324 2.2192 42 1 6.8721 -5.2911 4.5305 43 1 9.0503 -4.2544 5.0241 44 1 10.3832 -3.2646 3.2056 45 1 9.5385 -3.3131 0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337817606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:22 Heat of formation + Delta-G solvation = -22.476449 kcal Electronic energy + Delta-G solvation = -29657.118330 eV Core-core repulsion = 25639.231334 eV Total energy + Delta-G solvation = -4017.886996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53624 -41.06551 -39.95611 -37.95073 -37.13707 -36.08149 -34.84101 -34.41359 -32.50404 -31.75511 -30.81028 -29.99914 -29.15089 -25.74702 -24.68636 -24.13071 -23.57155 -23.21106 -22.22544 -21.44825 -20.04127 -18.79626 -18.38678 -18.16023 -17.88877 -17.60206 -17.21139 -16.73375 -16.50494 -16.36223 -16.00709 -15.78600 -15.52516 -15.08901 -15.01806 -14.81359 -14.56197 -14.45795 -14.26499 -14.14660 -13.96300 -13.51638 -13.23571 -13.08152 -13.04664 -12.75897 -12.71904 -12.52850 -12.16888 -11.94197 -11.90723 -11.69871 -11.32766 -11.13817 -10.97380 -10.93933 -10.39052 -9.84214 -9.80115 -9.62960 -8.93473 -8.41804 -6.49660 -0.07077 0.37642 0.50414 0.94493 1.31497 1.32483 1.46976 1.61279 1.84668 2.16495 2.27035 2.67054 2.87211 2.93015 3.37975 3.60841 3.68630 3.78443 3.90037 3.94251 4.08706 4.17260 4.21138 4.27696 4.29713 4.39875 4.52258 4.58721 4.64756 4.66818 4.78522 5.00602 5.02683 5.09897 5.13802 5.19835 5.20560 5.39074 5.42932 5.50827 5.55420 5.61398 5.65589 5.71122 5.91320 6.09779 6.10313 6.23603 6.51616 6.98369 7.08689 7.18651 7.60756 8.73460 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007674 B = 0.004266 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.875976 B = 6562.210020 C = 9055.165665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 0.942 3.058 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.257 3.743 10 N -0.727 5.727 11 C 0.698 3.302 12 O -0.633 6.633 13 N -0.733 5.733 14 C 0.193 3.807 15 H 0.097 0.903 16 C 0.092 3.908 17 N -0.490 5.490 18 C 0.131 3.869 19 C -0.233 4.233 20 C 0.001 3.999 21 C -0.287 4.287 22 C 0.500 3.500 23 O -0.601 6.601 24 C -0.107 4.107 25 C -0.118 4.118 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.125 4.125 29 C -0.108 4.108 30 H 0.274 0.726 31 H 0.009 0.991 32 H 0.011 0.989 33 H 0.397 0.603 34 H 0.406 0.594 35 H 0.096 0.904 36 H 0.157 0.843 37 H 0.207 0.793 38 H 0.181 0.819 39 H 0.160 0.840 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.270 -14.796 -4.752 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.765 3.235 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.588 4.588 8 H 0.070 0.930 9 C 0.133 3.867 10 N -0.379 5.379 11 C 0.398 3.602 12 O -0.515 6.515 13 N -0.393 5.393 14 C 0.087 3.913 15 H 0.115 0.885 16 C -0.030 4.030 17 N -0.198 5.198 18 C 0.005 3.995 19 C -0.255 4.255 20 C -0.021 4.021 21 C -0.309 4.309 22 C 0.305 3.695 23 O -0.489 6.489 24 C -0.109 4.109 25 C -0.137 4.137 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.142 4.142 29 C -0.127 4.127 30 H 0.083 0.917 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.231 0.769 34 H 0.245 0.755 35 H 0.114 0.886 36 H 0.175 0.825 37 H 0.224 0.776 38 H 0.198 0.802 39 H 0.177 0.823 40 H 0.155 0.845 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 25.404 -14.066 -4.121 29.329 hybrid contribution -1.410 0.089 0.173 1.424 sum 23.994 -13.977 -3.949 28.047 Atomic orbital electron populations 1.69986 1.07748 1.28732 1.50502 1.25615 0.95590 1.02744 0.93325 0.85794 0.79120 0.78907 0.79673 1.18547 1.19469 1.18646 1.21255 0.89938 0.94491 1.53069 0.93043 1.18916 0.93007 0.79429 0.95383 1.45219 1.04851 1.09888 1.77986 1.16169 0.82631 0.83821 0.77604 1.90802 1.55745 1.44547 1.60443 1.45450 1.08385 1.05726 1.79768 1.20140 0.80160 0.97509 0.93539 0.88549 1.22478 1.02279 0.96252 0.81958 1.45501 1.12959 1.52243 1.09107 1.22815 0.98936 0.92132 0.85652 1.21175 0.96829 1.09736 0.97801 1.21868 0.93571 0.87087 0.99601 1.22148 1.03234 1.13592 0.91911 1.17462 0.81226 0.79292 0.91518 1.90835 1.61942 1.54779 1.41371 1.20110 0.95886 1.00080 0.94843 1.21038 0.99191 0.99816 0.93642 1.21374 0.97105 1.00345 0.96343 1.21501 0.94486 0.97569 1.00499 1.21473 1.00999 0.99337 0.92421 1.21262 0.95223 0.98019 0.98171 0.91720 0.97315 0.97116 0.76874 0.75450 0.88580 0.82545 0.77634 0.80214 0.82280 0.84486 0.87588 0.85053 0.83830 0.83386 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.96 21.44 0.30 -57.37 16 2 C 0.03 1.63 5.47 84.65 0.46 2.09 16 3 Si 0.94 45.72 27.47 68.60 1.88 47.61 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -12.73 6.54 99.48 0.65 -12.07 16 7 C -0.55 -32.57 9.83 25.60 0.25 -32.31 16 8 H 0.05 3.25 7.84 -2.91 -0.02 3.23 16 9 C 0.26 13.74 4.50 85.63 0.38 14.12 16 10 N -0.73 -34.02 5.55 -482.29 -2.68 -36.70 16 11 C 0.70 30.10 8.52 179.06 1.53 31.63 16 12 O -0.63 -30.73 16.01 -4.00 -0.06 -30.79 16 13 N -0.73 -24.49 3.71 -461.41 -1.71 -26.20 16 14 C 0.19 4.73 2.48 44.24 0.11 4.84 16 15 H 0.10 2.42 7.44 -2.39 -0.02 2.41 16 16 C 0.09 1.58 5.06 86.38 0.44 2.01 16 17 N -0.49 -9.39 2.49 -650.98 -1.62 -11.01 16 18 C 0.13 1.53 10.28 83.42 0.86 2.38 16 19 C -0.23 -2.63 10.01 22.08 0.22 -2.41 16 20 C 0.00 0.01 10.10 22.32 0.23 0.23 16 21 C -0.29 -6.86 9.99 22.40 0.22 -6.64 16 22 C 0.50 13.66 6.69 84.82 0.57 14.22 16 23 O -0.60 -20.74 14.33 -5.51 -0.08 -20.81 16 24 C -0.11 -2.64 4.91 -19.87 -0.10 -2.74 16 25 C -0.12 -3.13 9.33 22.27 0.21 -2.92 16 26 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 27 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 28 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 29 C -0.11 -2.24 9.67 22.27 0.22 -2.03 16 30 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.01 0.50 7.20 -2.38 -0.02 0.48 16 32 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 33 H 0.40 17.74 8.34 -92.70 -0.77 16.96 16 34 H 0.41 13.94 5.77 -92.71 -0.54 13.41 16 35 H 0.10 1.96 7.39 -2.39 -0.02 1.94 16 36 H 0.16 1.14 8.01 -2.39 -0.02 1.12 16 37 H 0.21 0.45 8.04 -2.91 -0.02 0.43 16 38 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.11 3.02 7.71 -2.91 -0.02 3.00 16 42 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.14 2.27 8.04 -2.91 -0.02 2.25 16 Total: -1.00 -84.23 381.24 1.96 -82.27 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.34 Total: 37.61 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 6.26 Total: 15.40 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.71 Total: -131.28 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.14 Total: -51.61 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.61 kcal Total: -84.23 1.96 -82.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337817606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.793 kcal (2) G-P(sol) polarization free energy of solvation -84.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds