Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86798 * 119.99904 * 2 1 4 4 H 1.48504 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47439 * 300.00341 * 3 2 1 6 6 H 1.48501 * 109.46995 * 60.00578 * 3 2 1 7 7 C 1.40224 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 197.74691 * 7 2 1 9 9 C 1.41082 * 120.00173 * 17.47316 * 7 2 1 10 10 C 1.40904 * 120.10485 * 204.68167 * 9 7 2 11 11 C 1.36294 * 119.89566 * 179.66462 * 10 9 7 12 12 C 1.40054 * 120.10340 * 0.63537 * 11 10 9 13 13 C 1.47566 * 119.89681 * 179.68874 * 12 11 10 14 14 O 1.21613 * 119.99853 * 179.97438 * 13 12 11 15 15 N 1.34781 * 120.00268 * 359.97438 * 13 12 11 16 16 C 1.39301 * 120.00216 * 180.02562 * 15 13 12 17 17 C 1.36191 * 126.26686 * 0.02562 * 16 15 13 18 18 C 1.39709 * 107.85851 * 180.02562 * 17 16 15 19 19 N 1.30849 * 108.45156 * 0.02562 * 18 17 16 20 20 N 1.35828 * 126.27119 * 179.71347 * 16 15 13 21 21 C 1.46500 * 126.08966 * 359.97438 * 20 16 15 22 22 C 1.53004 * 109.46981 * 90.00246 * 21 20 16 23 23 H 1.09000 * 110.43519 * 305.69433 * 22 21 20 24 24 C 1.54822 * 110.48377 * 183.15211 * 22 21 20 25 25 C 1.55225 * 101.98297 * 220.51553 * 24 22 21 26 26 O 1.44381 * 103.56805 * 36.88769 * 25 24 22 27 27 C 1.43744 * 106.97170 * 320.00470 * 26 25 24 28 28 C 1.40046 * 120.20097 * 359.66149 * 12 11 10 29 29 C 1.36294 * 120.10669 * 0.02562 * 28 12 11 30 30 H 0.97003 * 120.00336 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.04834 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.95010 * 180.31776 * 11 10 9 33 33 H 0.96996 * 119.99597 * 359.97438 * 15 13 12 34 34 H 1.08003 * 126.07095 * 0.02974 * 17 16 15 35 35 H 1.08002 * 125.77745 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.46877 * 209.99888 * 21 20 16 37 37 H 1.09000 * 109.47265 * 329.99868 * 21 20 16 38 38 H 1.08999 * 110.90671 * 338.63913 * 24 22 21 39 39 H 1.09000 * 110.90173 * 102.24550 * 24 22 21 40 40 H 1.09001 * 110.52689 * 278.38580 * 25 24 22 41 41 H 1.09004 * 110.77618 * 155.50333 * 25 24 22 42 42 H 1.09005 * 109.88391 * 267.09093 * 27 26 25 43 43 H 1.08998 * 110.00596 * 146.00864 * 27 26 25 44 44 H 1.08006 * 119.94342 * 180.02562 * 28 12 11 45 45 H 1.08003 * 120.05116 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8816 2.3965 -1.2124 6 1 1.8817 2.3963 1.2126 7 6 2.0075 -1.2144 -0.0005 8 1 3.0490 -1.2368 0.2845 9 6 1.3510 -2.4078 -0.3679 10 6 1.8268 -3.6490 0.0996 11 6 1.1852 -4.7988 -0.2524 12 6 0.0625 -4.7491 -1.0883 13 6 -0.6246 -5.9973 -1.4721 14 8 -1.5999 -5.9563 -2.1974 15 7 -0.1713 -7.1830 -1.0188 16 6 -0.8196 -8.3613 -1.3816 17 6 -1.9158 -8.4639 -2.1833 18 6 -2.2432 -9.8178 -2.2902 19 7 -1.3848 -10.5085 -1.5844 20 7 -0.4708 -9.6190 -1.0053 21 6 0.6576 -9.9803 -0.1437 22 6 0.2002 -9.9948 1.3163 23 1 -0.2613 -9.0432 1.5800 24 6 1.3938 -10.2968 2.2550 25 6 0.7515 -11.2528 3.2957 26 8 -0.1629 -12.0455 2.5083 27 6 -0.7813 -11.1570 1.5625 28 6 -0.4103 -3.5183 -1.5604 29 6 0.2210 -2.3628 -1.2085 30 1 -0.4851 0.8400 0.0004 31 1 2.6956 -3.6887 0.7399 32 1 1.5461 -5.7501 0.1096 33 1 0.6068 -7.2157 -0.4406 34 1 -2.4389 -7.6441 -2.6530 35 1 -3.0658 -10.2255 -2.8591 36 1 1.0234 -10.9692 -0.4197 37 1 1.4572 -9.2497 -0.2667 38 1 2.1980 -10.7952 1.7137 39 1 1.7541 -9.3851 2.7316 40 1 0.2125 -10.6854 4.0543 41 1 1.5087 -11.8863 3.7578 42 1 -1.7158 -10.7726 1.9712 43 1 -0.9745 -11.6832 0.6277 44 1 -1.2767 -3.4848 -2.2044 45 1 -0.1446 -1.4141 -1.5728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340140369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = 17.090071 kcal Electronic energy + Delta-G solvation = -28674.451710 eV Core-core repulsion = 24658.280447 eV Total energy + Delta-G solvation = -4016.171263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34121 -39.64513 -39.10839 -37.30375 -34.89047 -34.25265 -34.03967 -31.47903 -30.51114 -29.81373 -29.32244 -28.55243 -26.13622 -25.96004 -23.06046 -22.74887 -21.50653 -21.35852 -21.04244 -20.14706 -19.36040 -18.03398 -17.62214 -16.90536 -16.50990 -16.40906 -15.45071 -15.38419 -15.31985 -14.98856 -14.48324 -14.17052 -14.02880 -13.79853 -13.53229 -13.41230 -13.19677 -13.04256 -12.80166 -12.47460 -12.38116 -12.04848 -11.99151 -11.66777 -11.57198 -11.36198 -11.34211 -11.14280 -11.11331 -10.84944 -10.63635 -10.52326 -10.16415 -9.91745 -9.70924 -9.48754 -9.19043 -8.86212 -7.93712 -7.87171 -7.66740 -7.17366 -4.76328 1.75959 2.20993 2.26616 2.79326 2.86519 2.89404 2.92585 3.10364 3.37500 3.63170 3.66358 3.72524 4.08028 4.28480 4.39507 4.40998 4.70017 4.86213 4.87239 4.97199 5.13811 5.26241 5.35293 5.39053 5.40114 5.45516 5.52080 5.66487 5.70438 5.77636 5.81330 5.93444 6.11194 6.24389 6.36434 6.58869 6.65039 6.69471 6.86611 6.90553 6.96408 7.21604 7.26974 7.41621 7.49879 7.69726 7.79349 7.89306 8.01038 8.26941 8.46561 8.58141 8.70766 9.73929 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002470 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.271646 B =11333.197390 C =12817.890665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.435 4.435 8 H 0.087 0.913 9 C 0.129 3.871 10 C -0.232 4.232 11 C -0.048 4.048 12 C -0.287 4.287 13 C 0.577 3.423 14 O -0.536 6.536 15 N -0.658 5.658 16 C 0.323 3.677 17 C -0.289 4.289 18 C 0.061 3.939 19 N -0.304 5.304 20 N -0.397 5.397 21 C 0.143 3.857 22 C -0.144 4.144 23 H 0.089 0.911 24 C -0.148 4.148 25 C 0.046 3.954 26 O -0.379 6.379 27 C 0.054 3.946 28 C -0.030 4.030 29 C -0.182 4.182 30 H 0.289 0.711 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.405 0.595 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -12.996 3.421 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.105 0.895 9 C 0.125 3.875 10 C -0.252 4.252 11 C -0.067 4.067 12 C -0.292 4.292 13 C 0.373 3.627 14 O -0.414 6.414 15 N -0.306 5.306 16 C 0.104 3.896 17 C -0.321 4.321 18 C -0.125 4.125 19 N -0.126 5.126 20 N -0.186 5.186 21 C 0.021 3.979 22 C -0.164 4.164 23 H 0.107 0.893 24 C -0.186 4.186 25 C -0.031 4.031 26 O -0.298 6.298 27 C -0.023 4.023 28 C -0.049 4.049 29 C -0.201 4.201 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.241 0.759 34 H 0.190 0.810 35 H 0.199 0.801 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.379 -14.128 3.395 14.724 hybrid contribution 0.554 1.823 0.225 1.919 sum 2.934 -12.305 3.620 13.158 Atomic orbital electron populations 1.69740 1.07992 1.30384 1.30352 1.26154 0.94859 1.02129 0.91909 0.86133 0.81031 0.79977 0.79052 1.17986 1.19208 1.19537 1.19937 0.98364 0.91153 1.36694 0.89486 1.17814 0.90453 0.92120 0.87068 1.20653 1.04148 0.92717 1.07642 1.20309 0.94249 0.96466 0.95682 1.18635 1.04311 0.90862 1.15379 1.18693 0.83212 0.82139 0.78631 1.90602 1.27229 1.86197 1.37378 1.43144 1.32317 1.03460 1.51638 1.18321 0.94292 0.80225 0.96800 1.21701 1.01870 0.97972 1.10539 1.23721 0.98326 0.92698 0.97797 1.77320 1.03960 1.14593 1.16741 1.48722 1.25590 1.02308 1.42001 1.21651 0.85507 1.03425 0.87278 1.23048 0.97379 1.01005 0.94920 0.89267 1.23206 0.97503 1.00907 0.97008 1.23584 0.92227 0.93451 0.93796 1.88884 1.58626 1.32914 1.49328 1.23239 0.94825 0.90330 0.93907 1.20457 0.97063 0.91234 0.96162 1.21023 0.99926 0.97068 1.02126 0.89936 0.88298 0.89605 0.75905 0.80996 0.80121 0.88074 0.89290 0.89877 0.89401 0.92104 0.88772 0.92525 0.88278 0.87865 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.61 10.95 55.56 0.61 -17.01 16 2 C 0.07 1.60 5.14 -17.31 -0.09 1.51 16 3 Si 0.91 16.39 29.60 -169.99 -5.03 11.36 16 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 6 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.43 -10.13 9.04 -37.76 -0.34 -10.47 16 8 H 0.09 1.92 7.91 -52.49 -0.42 1.50 16 9 C 0.13 3.07 5.57 -106.80 -0.60 2.47 16 10 C -0.23 -4.94 9.73 -39.27 -0.38 -5.32 16 11 C -0.05 -0.93 9.47 -39.60 -0.38 -1.30 16 12 C -0.29 -6.04 5.89 -104.73 -0.62 -6.66 16 13 C 0.58 11.44 7.73 -12.45 -0.10 11.34 16 14 O -0.54 -11.83 13.45 5.27 0.07 -11.76 16 15 N -0.66 -10.55 5.36 -12.28 -0.07 -10.62 16 16 C 0.32 5.17 7.68 -152.79 -1.17 4.00 16 17 C -0.29 -4.82 9.65 -39.77 -0.38 -5.21 16 18 C 0.06 0.85 12.00 -17.42 -0.21 0.65 16 19 N -0.30 -4.42 11.70 30.59 0.36 -4.06 16 20 N -0.40 -5.43 3.46 -60.27 -0.21 -5.64 16 21 C 0.14 1.44 5.35 -4.04 -0.02 1.42 16 22 C -0.14 -1.37 3.28 -89.08 -0.29 -1.66 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 24 C -0.15 -1.08 6.73 -24.59 -0.17 -1.24 16 25 C 0.05 0.38 7.72 38.34 0.30 0.68 16 26 O -0.38 -4.39 11.52 -35.23 -0.41 -4.79 16 27 C 0.05 0.60 7.23 37.73 0.27 0.87 16 28 C -0.03 -0.68 9.52 -39.60 -0.38 -1.05 16 29 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 30 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 31 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.09 1.31 6.37 -52.49 -0.33 0.97 16 33 H 0.40 5.37 5.99 -40.82 -0.24 5.12 16 34 H 0.17 3.18 5.82 -52.48 -0.31 2.87 16 35 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.74 7.53 -51.93 -0.39 0.35 16 38 H 0.08 0.52 7.87 -51.93 -0.41 0.12 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.22 6.78 -51.93 -0.35 0.87 16 44 H 0.10 2.31 7.63 -52.48 -0.40 1.91 16 45 H 0.12 3.01 6.16 -52.48 -0.32 2.69 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -28.18 373.07 -9.63 -37.81 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -5.69 Total: 13.77 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -4.89 Total: -14.69 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.69 Total: -37.32 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.34 Total: -16.56 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.18 -9.63 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340140369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.902 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds