Wall clock time and date at job start Sat Apr 11 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86794 * 120.00155 * 2 1 4 4 H 1.48505 * 109.47223 * 270.00595 * 3 2 1 5 5 H 1.48500 * 109.47034 * 30.00483 * 3 2 1 6 6 H 1.48503 * 109.47239 * 150.00577 * 3 2 1 7 7 C 1.40227 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00274 * 196.83467 * 7 2 1 9 9 C 1.41108 * 119.99968 * 16.82977 * 7 2 1 10 10 C 1.40890 * 120.10454 * 203.31790 * 9 7 2 11 11 C 1.36320 * 119.89233 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10691 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89606 * 179.97438 * 12 11 10 14 14 O 1.21590 * 119.99482 * 326.85656 * 13 12 11 15 15 N 1.34769 * 120.00009 * 146.85506 * 13 12 11 16 16 C 1.47088 * 120.88031 * 174.39621 * 15 13 12 17 17 C 1.53695 * 108.27507 * 128.75631 * 16 15 13 18 18 N 1.46894 * 109.25942 * 54.08114 * 17 16 15 19 19 C 1.46899 * 111.00004 * 172.60676 * 18 17 16 20 20 C 1.50696 * 109.47261 * 314.30356 * 19 18 17 21 21 C 1.41382 * 126.80563 * 95.00056 * 20 19 18 22 22 C 1.35452 * 103.98916 * 180.02562 * 21 20 19 23 23 O 1.34045 * 106.44466 * 359.97438 * 22 21 20 24 24 N 1.20926 * 111.56878 * 359.70988 * 23 22 21 25 25 C 1.46896 * 111.26927 * 296.75557 * 18 17 16 26 26 C 1.47080 * 120.88511 * 354.67275 * 15 13 12 27 27 C 1.40012 * 120.20644 * 359.97438 * 12 11 10 28 28 C 1.36314 * 120.10886 * 0.02562 * 27 12 11 29 29 H 0.97004 * 120.00131 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.05354 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.94684 * 179.72129 * 11 10 9 32 32 H 1.08997 * 109.62522 * 248.52410 * 16 15 13 33 33 H 1.08994 * 109.62912 * 9.10176 * 16 15 13 34 34 H 1.09008 * 109.64564 * 294.07775 * 17 16 15 35 35 H 1.08999 * 109.41764 * 173.95161 * 17 16 15 36 36 H 1.09000 * 109.47305 * 74.30251 * 19 18 17 37 37 H 1.09000 * 109.47137 * 194.30266 * 19 18 17 38 38 H 1.07998 * 128.00096 * 359.96368 * 21 20 19 39 39 H 1.07997 * 126.77875 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.49710 * 303.14524 * 25 18 17 41 41 H 1.09001 * 109.49648 * 183.06494 * 25 18 17 42 42 H 1.08998 * 109.62397 * 350.89984 * 26 15 13 43 43 H 1.09003 * 109.62797 * 111.28046 * 26 15 13 44 44 H 1.08005 * 119.94503 * 179.97438 * 27 12 11 45 45 H 1.08001 * 120.05454 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4379 2.6526 0.7001 6 1 3.5380 1.4401 0.6999 7 6 2.0075 -1.2144 -0.0005 8 1 3.0528 -1.2346 0.2703 9 6 1.3473 -2.4101 -0.3549 10 6 1.8443 -3.6507 0.0912 11 6 1.2034 -4.8032 -0.2541 12 6 0.0533 -4.7555 -1.0513 13 6 -0.6369 -6.0066 -1.4230 14 8 0.0035 -7.0253 -1.5975 15 7 -1.9766 -6.0194 -1.5688 16 6 -2.6714 -7.2206 -2.0565 17 6 -3.8122 -7.5475 -1.0798 18 7 -4.6637 -6.3619 -0.9152 19 6 -5.8631 -6.6802 -0.1290 20 6 -6.4650 -7.9678 -0.6298 21 6 -6.2417 -9.2646 -0.1129 22 6 -7.0005 -10.0655 -0.8987 23 8 -7.6022 -9.2639 -1.7887 24 7 -7.2983 -8.1056 -1.6205 25 6 -3.9180 -5.2499 -0.3109 26 6 -2.7822 -4.8308 -1.2503 27 6 -0.4444 -3.5250 -1.4970 28 6 0.1897 -2.3672 -1.1568 29 1 -0.4850 0.8401 0.0004 30 1 2.7316 -3.6885 0.7057 31 1 1.5861 -5.7549 0.0836 32 1 -3.0787 -7.0302 -3.0495 33 1 -1.9728 -8.0561 -2.0984 34 1 -3.3967 -7.8338 -0.1136 35 1 -4.4064 -8.3696 -1.4787 36 1 -5.5908 -6.7906 0.9207 37 1 -6.5900 -5.8747 -0.2329 38 1 -5.6112 -9.5505 0.7160 39 1 -7.1009 -11.1381 -0.8231 40 1 -3.5010 -5.5682 0.6445 41 1 -4.5889 -4.4056 -0.1521 42 1 -2.1566 -4.0856 -0.7589 43 1 -3.1971 -4.4131 -2.1676 44 1 -1.3316 -3.4931 -2.1120 45 1 -0.1951 -1.4185 -1.5007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340212440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:31 Heat of formation + Delta-G solvation = 72.918274 kcal Electronic energy + Delta-G solvation = -29019.420344 eV Core-core repulsion = 25005.669973 eV Total energy + Delta-G solvation = -4013.750371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.21632 -39.93083 -38.17603 -37.04576 -35.24520 -33.95163 -33.41605 -31.94054 -31.42352 -29.95270 -29.49508 -28.62137 -26.11490 -24.99958 -23.76808 -23.33846 -22.17671 -21.33125 -20.87125 -20.39337 -18.72110 -18.00520 -17.85187 -17.53845 -16.64130 -15.95525 -15.59987 -15.37021 -15.08516 -14.96917 -14.80825 -14.52544 -14.16540 -13.76605 -13.71823 -13.31275 -13.02720 -12.90481 -12.60362 -12.45169 -12.14575 -11.99120 -11.78425 -11.59644 -11.43449 -11.30574 -11.26330 -11.13881 -10.99242 -10.94101 -10.59632 -10.35648 -10.06342 -9.92850 -9.56740 -9.32356 -8.96443 -8.63797 -8.15359 -7.68821 -7.55735 -7.02718 -4.61305 1.23818 1.89369 2.26665 2.91390 2.95408 2.97418 2.98545 2.99711 3.45430 3.68992 3.73961 3.81876 3.89024 4.27990 4.48442 4.82257 4.86656 4.94448 4.99495 5.04561 5.25015 5.31473 5.35827 5.39948 5.50463 5.53030 5.59309 5.67418 5.71287 5.86377 6.00105 6.02566 6.11883 6.19376 6.27063 6.75934 6.76247 6.80446 6.84105 6.94146 7.05315 7.13328 7.42273 7.60518 7.80904 7.84644 8.02094 8.03784 8.09101 8.39360 8.63012 8.74106 8.96645 9.87606 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.002336 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.689352 B =11984.853562 C =12889.629188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.442 4.442 8 H 0.084 0.916 9 C 0.125 3.875 10 C -0.237 4.237 11 C -0.027 4.027 12 C -0.281 4.281 13 C 0.577 3.423 14 O -0.572 6.572 15 N -0.620 5.620 16 C 0.120 3.880 17 C 0.044 3.956 18 N -0.531 5.531 19 C 0.131 3.869 20 C 0.020 3.980 21 C -0.232 4.232 22 C -0.061 4.061 23 O 0.100 5.900 24 N -0.346 5.346 25 C 0.042 3.958 26 C 0.104 3.896 27 C -0.072 4.072 28 C -0.178 4.178 29 H 0.286 0.714 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.170 0.830 39 H 0.216 0.784 40 H 0.043 0.957 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 -10.873 1.170 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.470 4.470 8 H 0.102 0.898 9 C 0.122 3.878 10 C -0.257 4.257 11 C -0.046 4.046 12 C -0.285 4.285 13 C 0.372 3.628 14 O -0.453 6.453 15 N -0.354 5.354 16 C -0.004 4.004 17 C -0.085 4.085 18 N -0.257 5.257 19 C 0.003 3.997 20 C -0.139 4.139 21 C -0.254 4.254 22 C -0.142 4.142 23 O 0.032 5.968 24 N -0.049 5.049 25 C -0.087 4.087 26 C -0.020 4.020 27 C -0.091 4.091 28 C -0.197 4.197 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.187 0.813 39 H 0.233 0.767 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.217 -10.225 -0.216 17.514 hybrid contribution 0.897 -0.003 1.563 1.802 sum -13.321 -10.229 1.346 16.849 Atomic orbital electron populations 1.69719 1.07851 1.29945 1.32184 1.26083 0.94845 1.01855 0.91914 0.86204 0.80547 0.79835 0.79654 1.18945 1.20025 1.18334 1.19844 0.98043 0.91071 1.37996 0.89819 1.17786 0.90799 0.92100 0.87110 1.20686 1.03878 0.92635 1.08486 1.20265 0.92717 0.96920 0.94687 1.18837 1.02838 0.91102 1.15741 1.18753 0.80332 0.88918 0.74758 1.90630 1.65487 1.35810 1.53351 1.48019 1.06394 1.13469 1.67560 1.21604 0.93002 0.89381 0.96396 1.22618 0.94280 0.92489 0.99124 1.62094 1.06619 1.07478 1.49501 1.20409 0.92629 0.91564 0.95049 1.23467 0.98234 0.97134 0.95089 1.22813 1.05568 0.92011 1.04989 1.26020 0.97059 0.99475 0.91656 1.84878 1.54055 1.12156 1.45733 1.73908 1.15633 0.97431 1.17925 1.22599 0.95748 0.93811 0.96507 1.22352 0.91867 0.88733 0.99001 1.20727 0.97748 0.92210 0.98440 1.21085 0.99322 0.97053 1.02256 0.90276 0.88466 0.88656 0.91597 0.88973 0.94261 0.90292 0.92393 0.88721 0.81258 0.76729 0.93919 0.89338 0.86187 0.91271 0.88206 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.01 10.80 55.56 0.60 -17.41 16 2 C 0.07 1.69 5.17 -17.31 -0.09 1.60 16 3 Si 0.91 17.11 29.59 -169.99 -5.03 12.08 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.44 -10.83 9.06 -37.75 -0.34 -11.18 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.13 3.13 5.59 -106.80 -0.60 2.54 16 10 C -0.24 -5.65 9.73 -39.27 -0.38 -6.04 16 11 C -0.03 -0.62 9.53 -39.61 -0.38 -1.00 16 12 C -0.28 -6.34 5.38 -104.73 -0.56 -6.90 16 13 C 0.58 12.39 7.41 -12.43 -0.09 12.30 16 14 O -0.57 -13.69 16.22 5.29 0.09 -13.61 16 15 N -0.62 -10.90 3.00 -173.37 -0.52 -11.42 16 16 C 0.12 1.82 6.64 -3.36 -0.02 1.79 16 17 C 0.04 0.56 5.08 -3.47 -0.02 0.54 16 18 N -0.53 -6.61 4.77 -235.48 -1.12 -7.73 16 19 C 0.13 1.38 5.86 -4.98 -0.03 1.35 16 20 C 0.02 0.22 5.18 -82.10 -0.43 -0.21 16 21 C -0.23 -1.85 9.97 -39.38 -0.39 -2.25 16 22 C -0.06 -0.40 12.30 29.74 0.37 -0.04 16 23 O 0.10 0.98 11.20 17.16 0.19 1.17 16 24 N -0.35 -4.16 12.07 33.43 0.40 -3.75 16 25 C 0.04 0.53 5.58 -3.70 -0.02 0.51 16 26 C 0.10 1.59 4.86 -3.60 -0.02 1.58 16 27 C -0.07 -1.58 7.30 -39.61 -0.29 -1.87 16 28 C -0.18 -4.27 8.65 -39.27 -0.34 -4.61 16 29 H 0.29 5.99 8.29 -40.82 -0.34 5.66 16 30 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 31 H 0.10 2.12 7.96 -52.49 -0.42 1.71 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.48 7.04 -51.93 -0.37 1.12 16 34 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.08 0.95 5.77 -51.93 -0.30 0.65 16 36 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.22 0.45 8.06 -52.49 -0.42 0.02 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 42 H 0.12 2.07 4.50 -51.93 -0.23 1.84 16 43 H 0.07 1.02 7.95 -51.93 -0.41 0.60 16 44 H 0.10 1.93 5.72 -52.48 -0.30 1.63 16 45 H 0.12 3.03 6.01 -52.49 -0.32 2.72 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -29.55 366.34 -9.20 -38.74 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.69 Total: 8.27 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.63 Total: -11.86 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.64 Total: -40.31 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.28 Total: -12.44 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.55 -9.20 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340212440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.662 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds