Wall clock time and date at job start Sat Apr 11 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86794 * 120.00155 * 2 1 4 4 H 1.48505 * 109.47223 * 270.00595 * 3 2 1 5 5 H 1.48500 * 109.47034 * 30.00483 * 3 2 1 6 6 H 1.48503 * 109.47239 * 150.00577 * 3 2 1 7 7 C 1.40227 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00274 * 196.83467 * 7 2 1 9 9 C 1.41108 * 119.99968 * 16.82977 * 7 2 1 10 10 C 1.40890 * 120.10454 * 203.31790 * 9 7 2 11 11 C 1.36320 * 119.89233 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10691 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89606 * 179.97438 * 12 11 10 14 14 O 1.21590 * 119.99482 * 326.85656 * 13 12 11 15 15 N 1.34769 * 120.00009 * 146.85506 * 13 12 11 16 16 C 1.47088 * 120.88031 * 174.39621 * 15 13 12 17 17 C 1.53695 * 108.27507 * 128.75631 * 16 15 13 18 18 N 1.46894 * 109.25942 * 54.08114 * 17 16 15 19 19 C 1.46899 * 111.00004 * 172.60676 * 18 17 16 20 20 C 1.50696 * 109.47261 * 314.30356 * 19 18 17 21 21 C 1.41382 * 126.80563 * 95.00056 * 20 19 18 22 22 C 1.35452 * 103.98916 * 180.02562 * 21 20 19 23 23 O 1.34045 * 106.44466 * 359.97438 * 22 21 20 24 24 N 1.20926 * 111.56878 * 359.70988 * 23 22 21 25 25 C 1.46896 * 111.26927 * 296.75557 * 18 17 16 26 26 C 1.47080 * 120.88511 * 354.67275 * 15 13 12 27 27 C 1.40012 * 120.20644 * 359.97438 * 12 11 10 28 28 C 1.36314 * 120.10886 * 0.02562 * 27 12 11 29 29 H 0.97004 * 120.00131 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.05354 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.94684 * 179.72129 * 11 10 9 32 32 H 1.08997 * 109.62522 * 248.52410 * 16 15 13 33 33 H 1.08994 * 109.62912 * 9.10176 * 16 15 13 34 34 H 1.09008 * 109.64564 * 294.07775 * 17 16 15 35 35 H 1.08999 * 109.41764 * 173.95161 * 17 16 15 36 36 H 1.09000 * 109.47305 * 74.30251 * 19 18 17 37 37 H 1.09000 * 109.47137 * 194.30266 * 19 18 17 38 38 H 1.07998 * 128.00096 * 359.96368 * 21 20 19 39 39 H 1.07997 * 126.77875 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.49710 * 303.14524 * 25 18 17 41 41 H 1.09001 * 109.49648 * 183.06494 * 25 18 17 42 42 H 1.08998 * 109.62397 * 350.89984 * 26 15 13 43 43 H 1.09003 * 109.62797 * 111.28046 * 26 15 13 44 44 H 1.08005 * 119.94503 * 179.97438 * 27 12 11 45 45 H 1.08001 * 120.05454 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4379 2.6526 0.7001 6 1 3.5380 1.4401 0.6999 7 6 2.0075 -1.2144 -0.0005 8 1 3.0528 -1.2346 0.2703 9 6 1.3473 -2.4101 -0.3549 10 6 1.8443 -3.6507 0.0912 11 6 1.2034 -4.8032 -0.2541 12 6 0.0533 -4.7555 -1.0513 13 6 -0.6369 -6.0066 -1.4230 14 8 0.0035 -7.0253 -1.5975 15 7 -1.9766 -6.0194 -1.5688 16 6 -2.6714 -7.2206 -2.0565 17 6 -3.8122 -7.5475 -1.0798 18 7 -4.6637 -6.3619 -0.9152 19 6 -5.8631 -6.6802 -0.1290 20 6 -6.4650 -7.9678 -0.6298 21 6 -6.2417 -9.2646 -0.1129 22 6 -7.0005 -10.0655 -0.8987 23 8 -7.6022 -9.2639 -1.7887 24 7 -7.2983 -8.1056 -1.6205 25 6 -3.9180 -5.2499 -0.3109 26 6 -2.7822 -4.8308 -1.2503 27 6 -0.4444 -3.5250 -1.4970 28 6 0.1897 -2.3672 -1.1568 29 1 -0.4850 0.8401 0.0004 30 1 2.7316 -3.6885 0.7057 31 1 1.5861 -5.7549 0.0836 32 1 -3.0787 -7.0302 -3.0495 33 1 -1.9728 -8.0561 -2.0984 34 1 -3.3967 -7.8338 -0.1136 35 1 -4.4064 -8.3696 -1.4787 36 1 -5.5908 -6.7906 0.9207 37 1 -6.5900 -5.8747 -0.2329 38 1 -5.6112 -9.5505 0.7160 39 1 -7.1009 -11.1381 -0.8231 40 1 -3.5010 -5.5682 0.6445 41 1 -4.5889 -4.4056 -0.1521 42 1 -2.1566 -4.0856 -0.7589 43 1 -3.1971 -4.4131 -2.1676 44 1 -1.3316 -3.4931 -2.1120 45 1 -0.1951 -1.4185 -1.5007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340212440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:30 Heat of formation + Delta-G solvation = 55.375780 kcal Electronic energy + Delta-G solvation = -29020.181044 eV Core-core repulsion = 25005.669973 eV Total energy + Delta-G solvation = -4014.511070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.91295 -41.39110 -39.54512 -38.72894 -36.41946 -35.68718 -34.40624 -32.84499 -32.55707 -31.53322 -31.29243 -29.75317 -27.74826 -26.18585 -24.98598 -24.02485 -23.65467 -22.85559 -22.22977 -21.50719 -20.16418 -19.34317 -18.69142 -18.62646 -18.09614 -17.46211 -16.99806 -16.49103 -16.35019 -16.17068 -16.00017 -15.68196 -15.43047 -15.28768 -14.97530 -14.51427 -14.40927 -14.24985 -14.02409 -13.69663 -13.61108 -13.37453 -13.11141 -13.02022 -12.83369 -12.71545 -12.47663 -12.34868 -12.31529 -12.21991 -12.11089 -11.76500 -11.33078 -11.11204 -11.05987 -10.68292 -10.55009 -9.85412 -9.50302 -9.44889 -9.31344 -8.75813 -6.46418 0.49988 0.64130 1.13260 1.21844 1.39785 1.44421 1.53547 1.98686 2.08772 2.17965 2.47994 2.70455 2.86303 3.15246 3.63382 3.66715 3.69519 3.88770 3.97743 4.09922 4.19789 4.23688 4.30927 4.36118 4.41249 4.45093 4.49274 4.53656 4.65492 4.70105 4.76918 4.80675 4.83955 4.93904 4.99139 5.03997 5.12698 5.17558 5.30748 5.52320 5.60819 5.77772 5.85332 5.86913 5.99174 6.01006 6.23103 6.47772 6.56110 6.79567 6.90077 7.30377 7.37704 8.17509 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.002336 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.689352 B =11984.853562 C =12889.629188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.472 4.472 8 H 0.083 0.917 9 C 0.099 3.901 10 C -0.251 4.251 11 C -0.035 4.035 12 C -0.289 4.289 13 C 0.574 3.426 14 O -0.603 6.603 15 N -0.612 5.612 16 C 0.117 3.883 17 C 0.057 3.943 18 N -0.537 5.537 19 C 0.133 3.867 20 C 0.005 3.995 21 C -0.244 4.244 22 C -0.041 4.041 23 O 0.089 5.911 24 N -0.383 5.383 25 C 0.049 3.951 26 C 0.101 3.899 27 C -0.058 4.058 28 C -0.196 4.196 29 H 0.297 0.703 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.187 0.813 39 H 0.261 0.739 40 H 0.037 0.963 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.124 0.876 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.154 -11.091 1.399 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.499 4.499 8 H 0.101 0.899 9 C 0.096 3.904 10 C -0.271 4.271 11 C -0.055 4.055 12 C -0.293 4.293 13 C 0.369 3.631 14 O -0.487 6.487 15 N -0.345 5.345 16 C -0.006 4.006 17 C -0.072 4.072 18 N -0.263 5.263 19 C 0.006 3.994 20 C -0.154 4.154 21 C -0.266 4.266 22 C -0.122 4.122 23 O 0.023 5.977 24 N -0.088 5.088 25 C -0.079 4.079 26 C -0.021 4.021 27 C -0.077 4.077 28 C -0.215 4.215 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.204 0.796 39 H 0.276 0.724 40 H 0.055 0.945 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.142 0.858 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.809 -10.454 0.014 18.952 hybrid contribution 1.261 -0.043 1.490 1.952 sum -14.548 -10.497 1.504 18.002 Atomic orbital electron populations 1.69732 1.09016 1.31497 1.31590 1.26869 0.95614 1.04632 0.90960 0.85134 0.79120 0.75467 0.79706 1.18580 1.18801 1.18275 1.20087 0.98312 0.92102 1.39418 0.89912 1.18123 0.91624 0.92808 0.87826 1.20815 1.04453 0.92706 1.09103 1.20410 0.93155 0.96905 0.94982 1.19066 1.02831 0.92043 1.15364 1.18600 0.81612 0.88004 0.74904 1.90606 1.66580 1.36460 1.55044 1.48029 1.05374 1.14944 1.66129 1.21761 0.93357 0.87939 0.97494 1.22456 0.93471 0.93017 0.98228 1.62047 1.06916 1.07129 1.50241 1.20419 0.91570 0.92005 0.95445 1.23645 0.98397 0.98053 0.95325 1.23084 1.06486 0.91085 1.05929 1.26854 0.94870 1.00880 0.89592 1.84830 1.54397 1.11977 1.46519 1.73911 1.16975 0.98676 1.19198 1.22503 0.95245 0.94884 0.95268 1.22407 0.92095 0.87630 0.99980 1.20878 0.97843 0.91277 0.97679 1.21087 0.99837 0.97447 1.03175 0.89191 0.87851 0.88266 0.90838 0.90054 0.94545 0.89085 0.91001 0.88504 0.79555 0.72350 0.94474 0.87161 0.88082 0.90084 0.85817 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.96 10.80 21.87 0.24 -36.72 16 2 C 0.04 1.75 5.17 85.35 0.44 2.19 16 3 Si 0.99 34.51 29.59 68.60 2.03 36.54 16 4 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 6 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 7 C -0.47 -23.60 9.06 23.46 0.21 -23.38 16 8 H 0.08 4.00 7.90 -2.91 -0.02 3.98 16 9 C 0.10 5.11 5.59 -21.28 -0.12 4.99 16 10 C -0.25 -12.34 9.73 22.47 0.22 -12.13 16 11 C -0.04 -1.68 9.53 22.25 0.21 -1.47 16 12 C -0.29 -13.20 5.38 -19.93 -0.11 -13.30 16 13 C 0.57 24.76 7.41 86.73 0.64 25.40 16 14 O -0.60 -29.21 16.22 -4.00 -0.06 -29.27 16 15 N -0.61 -21.11 3.00 -820.68 -2.46 -23.58 16 16 C 0.12 3.44 6.64 86.50 0.57 4.01 16 17 C 0.06 1.36 5.08 86.54 0.44 1.80 16 18 N -0.54 -12.35 4.77 -898.91 -4.29 -16.64 16 19 C 0.13 2.53 5.86 85.56 0.50 3.04 16 20 C 0.00 0.09 5.18 43.58 0.23 0.32 16 21 C -0.24 -3.26 9.97 22.40 0.22 -3.03 16 22 C -0.04 -0.42 12.30 67.18 0.83 0.41 16 23 O 0.09 1.59 11.20 71.58 0.80 2.39 16 24 N -0.38 -8.68 12.07 -49.54 -0.60 -9.28 16 25 C 0.05 1.18 5.58 86.38 0.48 1.66 16 26 C 0.10 3.00 4.86 86.35 0.42 3.42 16 27 C -0.06 -2.56 7.30 22.25 0.16 -2.39 16 28 C -0.20 -9.59 8.65 22.47 0.19 -9.40 16 29 H 0.30 12.24 8.29 -92.71 -0.77 11.47 16 30 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.10 4.55 7.96 -2.91 -0.02 4.52 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.59 7.04 -2.39 -0.02 2.57 16 34 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.09 1.99 5.77 -2.39 -0.01 1.98 16 36 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.26 -0.09 8.06 -2.91 -0.02 -0.12 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.11 2.19 8.11 -2.39 -0.02 2.17 16 42 H 0.10 3.44 4.50 -2.39 -0.01 3.43 16 43 H 0.08 2.24 7.95 -2.39 -0.02 2.22 16 44 H 0.12 4.73 5.72 -2.91 -0.02 4.71 16 45 H 0.12 5.85 6.01 -2.91 -0.02 5.83 16 Total: -1.00 -65.15 366.34 2.23 -62.92 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 1.02 Total: 31.50 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.55 Total: -17.87 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -7.12 Total: -86.22 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Total: -65.15 2.23 -62.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340212440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.301 kcal (2) G-P(sol) polarization free energy of solvation -65.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds