Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00360 * 2 1 4 4 H 1.48499 * 109.47396 * 239.99935 * 3 2 1 5 5 H 1.48499 * 109.47435 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47283 * 119.99620 * 3 2 1 7 7 C 1.37880 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47465 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47374 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00209 * 180.02562 * 12 11 10 14 14 O 1.21369 * 119.99980 * 0.02562 * 13 12 11 15 15 C 1.49312 * 120.00285 * 179.97438 * 13 12 11 16 16 O 1.21387 * 120.00128 * 0.02562 * 15 13 12 17 17 N 1.34784 * 120.00330 * 179.97438 * 15 13 12 18 18 C 1.39625 * 120.00162 * 174.58918 * 17 15 13 19 19 C 1.39064 * 119.93135 * 326.42066 * 18 17 15 20 20 C 1.37800 * 120.06899 * 179.72228 * 19 18 17 21 21 C 1.39633 * 119.92627 * 0.54812 * 20 19 18 22 22 C 1.47816 * 120.06638 * 179.70017 * 21 20 19 23 23 C 1.36278 * 126.05944 * 0.02655 * 22 21 20 24 24 C 1.40441 * 107.33900 * 179.97438 * 23 22 21 25 25 C 1.35054 * 107.69579 * 359.97438 * 24 23 22 26 26 N 1.36367 * 108.48564 * 359.77301 * 25 24 23 27 27 H 0.96997 * 125.70211 * 180.27181 * 26 25 24 28 28 C 1.39634 * 119.86468 * 359.72674 * 21 20 19 29 29 C 1.37789 * 119.93619 * 359.97438 * 28 21 20 30 30 H 0.97003 * 119.99757 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47142 * 59.99982 * 9 7 2 32 32 H 1.08998 * 109.47044 * 300.00128 * 9 7 2 33 33 H 1.08999 * 109.46967 * 59.99912 * 10 9 7 34 34 H 1.09001 * 109.46791 * 300.00448 * 10 9 7 35 35 H 1.09012 * 109.47018 * 59.99730 * 11 10 9 36 36 H 1.08998 * 109.47072 * 300.00236 * 11 10 9 37 37 H 0.96994 * 119.99934 * 359.97438 * 12 11 10 38 38 H 0.97003 * 119.99596 * 354.86300 * 17 15 13 39 39 H 1.08003 * 119.96775 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.03742 * 180.27855 * 20 19 18 41 41 H 1.08002 * 126.32947 * 359.92406 * 23 22 21 42 42 H 1.08006 * 126.15281 * 180.02562 * 24 23 22 43 43 H 1.08003 * 125.75780 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.02837 * 180.02562 * 28 21 20 45 45 H 1.07994 * 119.97001 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4320 -6.1007 0.0006 13 6 1.9827 -7.3713 0.0005 14 8 0.7895 -7.5931 0.0004 15 6 2.9529 -8.5063 -0.0008 16 8 4.1464 -8.2846 -0.0012 17 7 2.5036 -9.7770 -0.0003 18 6 3.4057 -10.8365 -0.1155 19 6 4.5550 -10.6889 -0.8844 20 6 5.4501 -11.7307 -0.9953 21 6 5.1963 -12.9395 -0.3440 22 6 6.1510 -14.0613 -0.4663 23 6 7.3126 -14.0520 -1.1788 24 6 7.9087 -15.3141 -1.0240 25 6 7.1048 -16.0531 -0.2293 26 7 6.0282 -15.2938 0.1224 27 1 5.2966 -15.5784 0.6923 28 6 4.0385 -13.0865 0.4227 29 6 3.1504 -12.0390 0.5348 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8903 33 1 2.8718 -3.6044 0.8905 34 1 2.8718 -3.6044 -0.8894 35 1 0.8530 -5.0451 -0.8887 36 1 0.8537 -5.0446 0.8914 37 1 3.3856 -5.9235 -0.0005 38 1 1.5532 -9.9553 0.0760 39 1 4.7487 -9.7550 -1.3912 40 1 6.3447 -11.6139 -1.5890 41 1 7.7023 -13.2268 -1.7565 42 1 8.8426 -15.6357 -1.4612 43 1 7.2863 -17.0721 0.0792 44 1 3.8398 -14.0201 0.9279 45 1 2.2550 -12.1520 1.1279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344640701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = -8.103477 kcal Electronic energy + Delta-G solvation = -26733.478915 eV Core-core repulsion = 22716.215177 eV Total energy + Delta-G solvation = -4017.263738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55500 -41.13869 -39.48865 -38.27737 -35.96781 -35.12820 -33.37470 -31.88020 -31.39825 -31.29981 -30.92773 -28.05917 -27.13986 -25.06667 -23.50397 -23.22133 -22.22161 -20.98956 -20.79272 -20.44121 -20.05656 -18.87187 -18.60470 -17.72931 -16.54183 -16.40378 -16.23723 -15.53225 -15.43427 -15.13890 -14.71395 -14.67581 -14.47861 -14.37040 -14.11906 -13.89278 -13.79024 -13.63390 -13.17148 -13.09094 -12.53942 -12.33680 -12.31255 -11.93568 -11.86047 -11.74892 -11.57694 -10.91502 -10.90910 -10.80087 -10.65132 -9.93944 -9.91107 -9.46142 -9.37541 -9.29534 -9.18537 -9.17141 -9.07893 -8.39712 -7.79571 -6.04643 -4.07888 0.41866 1.00131 1.26946 2.04044 2.16161 2.64918 2.82722 3.05080 3.31288 3.36024 3.37937 3.46316 3.54839 4.28621 4.32276 4.42345 4.43337 4.50520 4.76390 4.90749 5.00358 5.05587 5.12605 5.27149 5.31397 5.52384 5.58380 5.62824 5.63251 5.76434 5.86829 5.90454 6.02195 6.02598 6.11391 6.16029 6.49040 6.50350 6.58830 6.62920 6.70563 6.76262 6.90885 7.12941 7.24358 7.52794 7.58632 7.70049 7.89580 7.93586 8.34309 8.98302 9.56640 11.06558 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029985 B = 0.001430 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.576913 B =19581.273247 C =20370.661456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.688 5.688 13 C 0.503 3.497 14 O -0.522 6.522 15 C 0.509 3.491 16 O -0.497 6.497 17 N -0.648 5.648 18 C 0.144 3.856 19 C -0.111 4.111 20 C -0.081 4.081 21 C -0.029 4.029 22 C 0.053 3.947 23 C -0.176 4.176 24 C -0.200 4.200 25 C -0.006 4.006 26 N -0.556 5.556 27 H 0.413 0.587 28 C -0.104 4.104 29 C -0.132 4.132 30 H 0.262 0.738 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.412 0.588 38 H 0.424 0.576 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.166 0.834 44 H 0.120 0.880 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.561 -33.923 -0.187 35.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.339 5.339 13 C 0.282 3.718 14 O -0.399 6.399 15 C 0.291 3.709 16 O -0.370 6.370 17 N -0.295 5.295 18 C 0.050 3.950 19 C -0.131 4.131 20 C -0.101 4.101 21 C -0.031 4.031 22 C -0.058 4.058 23 C -0.201 4.201 24 C -0.225 4.225 25 C -0.138 4.138 26 N -0.151 5.151 27 H 0.250 0.750 28 C -0.123 4.123 29 C -0.152 4.152 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.262 0.738 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.183 0.817 44 H 0.138 0.862 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.251 -33.746 -0.100 35.269 hybrid contribution 0.072 0.738 0.371 0.829 sum 10.324 -33.008 0.271 34.586 Atomic orbital electron populations 1.69950 1.06068 1.26856 1.50397 1.25015 0.94857 0.99308 0.95168 0.86633 0.79562 0.83009 0.78642 1.20209 1.21258 1.20222 1.21160 0.93026 0.90886 1.51219 0.92609 1.19027 0.93779 0.90750 0.97733 1.21938 0.99916 0.92883 1.01379 1.21891 0.91699 0.84598 1.02687 1.46073 1.12385 1.04855 1.70620 1.19742 0.88246 0.84372 0.79461 1.90787 1.15764 1.84582 1.48803 1.20545 0.89085 0.84168 0.77063 1.90794 1.16119 1.84504 1.45587 1.43169 1.11445 1.04018 1.70832 1.17789 0.92218 0.87678 0.97322 1.21115 0.93852 1.00020 0.98089 1.20959 0.99277 0.91075 0.98752 1.18058 0.93495 0.92174 0.99365 1.18720 0.98115 0.86065 1.02948 1.20979 0.95560 0.98895 1.04619 1.20878 1.01752 0.94846 1.04982 1.21932 0.89802 0.97944 1.04099 1.42048 1.20813 1.11481 1.40718 0.75007 1.20787 0.93741 0.98461 0.99309 1.20763 1.01218 0.92656 1.00589 0.92845 0.96180 0.96182 0.92379 0.92359 0.90925 0.90930 0.75196 0.73789 0.84193 0.84868 0.84342 0.84465 0.81714 0.86220 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.11 1.86 5.67 -4.05 -0.02 1.84 16 12 N -0.69 -9.70 5.55 -60.78 -0.34 -10.04 16 13 C 0.50 7.02 7.88 -11.65 -0.09 6.93 16 14 O -0.52 -8.34 16.48 5.48 0.09 -8.25 16 15 C 0.51 6.28 7.61 -11.65 -0.09 6.19 16 16 O -0.50 -6.88 14.17 5.46 0.08 -6.80 16 17 N -0.65 -6.47 5.32 -10.26 -0.05 -6.53 16 18 C 0.14 1.40 6.27 -83.70 -0.53 0.88 16 19 C -0.11 -1.13 8.63 -39.44 -0.34 -1.47 16 20 C -0.08 -0.73 9.55 -39.22 -0.37 -1.10 16 21 C -0.03 -0.25 5.88 -104.94 -0.62 -0.87 16 22 C 0.05 0.44 6.91 -82.28 -0.57 -0.13 16 23 C -0.18 -1.47 10.23 -39.46 -0.40 -1.88 16 24 C -0.20 -1.46 10.83 -39.88 -0.43 -1.89 16 25 C -0.01 -0.04 11.93 -16.67 -0.20 -0.23 16 26 N -0.56 -3.38 5.99 -9.44 -0.06 -3.44 16 27 H 0.41 1.40 8.07 -40.82 -0.33 1.07 16 28 C -0.10 -0.75 9.69 -39.22 -0.38 -1.13 16 29 C -0.13 -1.02 9.94 -39.44 -0.39 -1.42 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.41 5.25 7.94 -40.82 -0.32 4.93 16 38 H 0.42 3.52 8.29 -40.82 -0.34 3.18 16 39 H 0.14 1.53 6.42 -52.48 -0.34 1.20 16 40 H 0.13 0.98 6.98 -52.49 -0.37 0.62 16 41 H 0.14 1.00 7.25 -52.49 -0.38 0.62 16 42 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 43 H 0.17 0.47 8.06 -52.48 -0.42 0.05 16 44 H 0.12 0.55 7.16 -52.49 -0.38 0.18 16 45 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -33.34 388.71 -9.63 -42.97 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.80 Total: 5.11 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -5.13 Total: -9.49 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.29 Total: -45.69 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.17 Total: -15.05 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.34 -9.63 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344640701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.867 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds