Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00375 * 2 1 4 4 H 1.48492 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46725 * 300.00331 * 3 2 1 6 6 H 1.48505 * 109.46721 * 59.99797 * 3 2 1 7 7 C 1.37876 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00215 * 359.97438 * 7 2 1 10 10 N 1.46491 * 109.47388 * 180.02562 * 9 7 2 11 11 C 1.46494 * 120.00469 * 81.20745 * 10 9 7 12 12 C 1.53004 * 109.47244 * 264.54716 * 11 10 9 13 13 C 1.53005 * 117.49899 * 243.85601 * 12 11 10 14 14 C 1.53001 * 117.49905 * 175.23243 * 12 11 10 15 15 C 1.34779 * 120.00006 * 261.20560 * 10 9 7 16 16 O 1.21582 * 120.00542 * 173.63486 * 15 10 9 17 17 C 1.47641 * 119.99780 * 353.63524 * 15 10 9 18 18 C 1.39727 * 120.07823 * 29.54731 * 17 15 10 19 19 C 1.37715 * 119.91702 * 179.71629 * 18 17 15 20 20 C 1.39051 * 120.08164 * 0.55608 * 19 18 17 21 21 N 1.39830 * 119.92164 * 179.74037 * 20 19 18 22 22 C 1.37750 * 126.52178 * 130.00186 * 21 20 19 23 23 C 1.34394 * 106.90222 * 180.02562 * 22 21 20 24 24 N 1.34399 * 108.35050 * 359.97438 * 23 22 21 25 25 C 1.30996 * 109.36756 * 359.72580 * 24 23 22 26 26 O 1.35488 * 125.78909 * 180.28558 * 25 24 23 27 27 C 1.39061 * 120.15888 * 359.71699 * 20 19 18 28 28 C 1.37709 * 120.07884 * 0.02562 * 27 20 19 29 29 H 0.97003 * 119.99925 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46741 * 60.00300 * 9 7 2 31 31 H 1.09005 * 109.47062 * 300.00467 * 9 7 2 32 32 H 1.08996 * 109.47597 * 144.54272 * 11 10 9 33 33 H 1.09006 * 109.47256 * 24.54484 * 11 10 9 34 34 H 1.08997 * 115.54903 * 29.56035 * 12 11 10 35 35 H 1.09001 * 117.49131 * 359.97438 * 13 12 11 36 36 H 1.08996 * 117.50136 * 145.01664 * 13 12 11 37 37 H 1.08994 * 117.49637 * 214.97576 * 14 12 11 38 38 H 1.08994 * 117.49931 * 0.02562 * 14 12 11 39 39 H 1.07996 * 120.04278 * 359.97438 * 18 17 15 40 40 H 1.07997 * 119.95743 * 180.27076 * 19 18 17 41 41 H 1.08000 * 126.54604 * 0.03817 * 22 21 20 42 42 H 1.08008 * 125.82568 * 180.02562 * 23 22 21 43 43 H 0.96706 * 114.00079 * 270.18088 * 26 25 24 44 44 H 1.07999 * 119.95897 * 179.97438 * 27 20 19 45 45 H 1.08001 * 120.04049 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.8263 -4.0435 1.2532 12 6 4.1912 -3.3684 1.4024 13 6 5.4278 -4.2694 1.4119 14 6 4.9567 -3.6031 2.7062 15 6 2.5051 -4.2409 -1.1540 16 8 3.3788 -5.0861 -1.1752 17 6 1.7752 -3.9026 -2.3920 18 6 1.2605 -2.6161 -2.5722 19 6 0.5853 -2.3025 -3.7307 20 6 0.4055 -3.2675 -4.7156 21 7 -0.2854 -2.9469 -5.8883 22 6 0.1341 -3.1864 -7.1784 23 6 -0.8271 -2.7215 -7.9945 24 7 -1.8132 -2.2097 -7.2382 25 6 -1.5041 -2.3439 -5.9723 26 8 -2.2655 -1.9467 -4.9243 27 6 0.9114 -4.5505 -4.5373 28 6 1.5922 -4.8698 -3.3836 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 2.9555 -5.1257 1.2416 33 1 2.1885 -3.7627 2.0914 34 1 4.2851 -2.3892 0.9330 35 1 5.2688 -5.3431 1.3122 36 1 6.3355 -3.8831 0.9484 37 1 5.5546 -2.7785 3.0942 38 1 4.4882 -4.2389 3.4574 39 1 1.3956 -1.8675 -1.8056 40 1 0.1910 -1.3071 -3.8726 41 1 1.0587 -3.6580 -7.4769 42 1 -0.8105 -2.7543 -9.0739 43 1 -2.0937 -1.0403 -4.6345 44 1 0.7695 -5.2976 -5.3041 45 1 1.9852 -5.8663 -3.2460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593452221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 77.886969 kcal Electronic energy + Delta-G solvation = -29624.798708 eV Core-core repulsion = 25611.263796 eV Total energy + Delta-G solvation = -4013.534912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.27651 -40.03018 -38.20813 -37.23990 -36.77453 -35.21285 -33.89033 -32.76117 -30.98362 -29.87418 -28.69050 -27.92488 -26.49465 -23.88463 -23.01750 -22.77497 -21.99416 -21.30651 -21.12431 -20.45745 -19.19446 -18.86373 -17.25094 -16.90737 -16.79309 -15.95223 -15.76611 -15.05931 -14.84745 -14.81946 -14.72782 -14.36180 -14.12630 -13.99715 -13.54847 -13.50145 -13.33342 -13.29145 -12.58256 -12.41622 -12.29536 -12.12363 -11.85542 -11.50989 -11.34061 -11.20140 -11.12189 -11.08420 -10.52977 -10.30617 -10.18762 -10.02109 -9.90412 -9.78044 -9.52179 -9.23249 -8.93909 -8.72415 -8.53406 -8.26698 -7.89700 -6.43225 -4.53186 0.82047 1.53621 1.89775 2.42469 2.90430 3.06795 3.16990 3.18418 3.24006 3.69163 3.86641 4.01784 4.14418 4.24722 4.74845 4.86101 4.95075 4.98764 5.07948 5.16204 5.22925 5.32850 5.41654 5.42797 5.52897 5.59770 5.80801 5.84980 5.91363 5.99031 6.04825 6.12253 6.17996 6.22953 6.30343 6.43489 6.46844 6.51257 6.53955 6.67376 6.75250 6.84847 7.02205 7.10001 7.33994 7.54012 7.65648 7.76862 7.85748 8.15368 8.56334 8.81436 9.15790 10.60899 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003851 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.863428 B = 7268.976044 C = 9148.012015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.204 3.796 10 N -0.585 5.585 11 C 0.158 3.842 12 C -0.153 4.153 13 C -0.174 4.174 14 C -0.185 4.185 15 C 0.556 3.444 16 O -0.560 6.560 17 C -0.124 4.124 18 C -0.077 4.077 19 C -0.123 4.123 20 C 0.124 3.876 21 N -0.414 5.414 22 C -0.040 4.040 23 C -0.017 4.017 24 N -0.485 5.485 25 C 0.387 3.613 26 O -0.437 6.437 27 C -0.137 4.137 28 C -0.054 4.054 29 H 0.269 0.731 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.213 0.787 40 H 0.126 0.874 41 H 0.181 0.819 42 H 0.178 0.822 43 H 0.404 0.596 44 H 0.129 0.871 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -4.986 -6.101 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.085 3.915 10 N -0.314 5.314 11 C 0.035 3.965 12 C -0.172 4.172 13 C -0.211 4.211 14 C -0.222 4.222 15 C 0.344 3.656 16 O -0.441 6.441 17 C -0.127 4.127 18 C -0.094 4.094 19 C -0.142 4.142 20 C 0.033 3.967 21 N -0.106 5.106 22 C -0.170 4.170 23 C -0.164 4.164 24 N -0.214 5.214 25 C 0.088 3.912 26 O -0.238 6.238 27 C -0.157 4.157 28 C -0.073 4.073 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.229 0.771 40 H 0.144 0.856 41 H 0.198 0.802 42 H 0.195 0.805 43 H 0.262 0.738 44 H 0.147 0.853 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.370 -5.469 -6.221 8.396 hybrid contribution 1.236 1.227 0.451 1.799 sum 2.606 -4.242 -5.770 7.621 Atomic orbital electron populations 1.69935 1.05924 1.27760 1.47990 1.24999 0.94911 0.99439 0.94230 0.86482 0.80355 0.83016 0.78063 1.19438 1.20615 1.20557 1.21533 0.94124 0.90059 1.52439 0.91260 1.20413 0.88193 0.82773 1.00139 1.48042 1.43611 1.33787 1.05947 1.20830 0.91861 0.97613 0.86206 1.22840 0.92709 1.01256 1.00362 1.22910 0.98649 0.98891 1.00642 1.22899 1.04615 1.03352 0.91350 1.18128 0.82729 0.81209 0.83496 1.90697 1.32344 1.35128 1.85904 1.20166 1.01543 0.95171 0.95795 1.23490 0.90480 0.98351 0.97078 1.20994 1.01458 0.98210 0.93558 1.17980 0.97776 0.94620 0.86353 1.43618 1.15153 1.46017 1.05782 1.22730 1.02971 1.09672 0.81653 1.22165 0.90909 1.03585 0.99715 1.70561 1.28565 1.23135 0.99151 1.20611 0.82851 1.00492 0.87220 1.84903 1.57316 1.36453 1.45141 1.20788 1.01656 0.94262 0.98969 1.21028 0.95449 0.99473 0.91360 0.92106 0.91530 0.94633 0.91432 0.90224 0.86692 0.89039 0.89681 0.89290 0.89245 0.77074 0.85562 0.80174 0.80495 0.73844 0.85343 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.39 13.29 55.43 0.74 -20.66 16 2 C 0.07 1.62 5.34 -17.82 -0.10 1.53 16 3 Si 0.89 18.70 29.54 -169.99 -5.02 13.68 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -12.43 7.41 -34.44 -0.26 -12.69 16 8 H 0.07 1.63 6.10 -52.49 -0.32 1.31 16 9 C 0.20 4.36 4.66 -5.20 -0.02 4.34 16 10 N -0.59 -11.50 2.48 -176.25 -0.44 -11.94 16 11 C 0.16 2.78 5.59 -4.04 -0.02 2.75 16 12 C -0.15 -2.60 5.93 -90.61 -0.54 -3.13 16 13 C -0.17 -2.64 10.18 -26.73 -0.27 -2.91 16 14 C -0.18 -2.58 10.25 -26.73 -0.27 -2.85 16 15 C 0.56 11.11 7.41 -12.42 -0.09 11.02 16 16 O -0.56 -11.97 16.45 5.29 0.09 -11.88 16 17 C -0.12 -2.26 5.59 -104.95 -0.59 -2.84 16 18 C -0.08 -1.41 7.48 -39.22 -0.29 -1.70 16 19 C -0.12 -2.02 9.38 -39.47 -0.37 -2.39 16 20 C 0.12 1.88 5.98 -83.60 -0.50 1.38 16 21 N -0.41 -5.96 2.89 -62.15 -0.18 -6.14 16 22 C -0.04 -0.48 11.30 -16.25 -0.18 -0.66 16 23 C -0.02 -0.21 11.84 -17.78 -0.21 -0.42 16 24 N -0.49 -7.48 11.27 -14.64 -0.17 -7.64 16 25 C 0.39 5.96 8.85 -88.86 -0.79 5.17 16 26 O -0.44 -6.35 13.24 -18.15 -0.24 -6.59 16 27 C -0.14 -1.95 9.67 -39.47 -0.38 -2.33 16 28 C -0.05 -0.84 9.59 -39.22 -0.38 -1.22 16 29 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 30 H 0.07 1.45 3.98 -52.37 -0.21 1.25 16 31 H 0.04 0.81 8.01 -51.93 -0.42 0.40 16 32 H 0.07 1.15 7.42 -51.93 -0.39 0.76 16 33 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 34 H 0.12 2.23 6.33 -51.93 -0.33 1.90 16 35 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.21 4.41 3.04 -52.49 -0.16 4.25 16 40 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.18 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.40 4.16 9.06 45.56 0.41 4.57 16 44 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.14 1.96 7.92 -52.49 -0.42 1.55 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -28.25 379.72 -9.50 -37.76 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -4.74 Total: 14.65 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -5.26 Total: -6.97 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.05 Total: -46.38 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.15 Total: -18.47 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.25 -9.50 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593452221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.643 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds