Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00332 * 2 1 4 4 H 1.48499 * 109.47160 * 239.99935 * 3 2 1 5 5 H 1.48497 * 109.47116 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47285 * 120.00433 * 3 2 1 7 7 C 1.37877 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99716 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52356 * 60.08432 * 9 7 2 11 11 C 1.53070 * 109.62238 * 180.10801 * 9 7 2 12 12 C 1.53039 * 109.65812 * 181.16791 * 11 9 7 13 13 C 1.53191 * 109.31416 * 298.69913 * 12 11 9 14 14 N 1.46928 * 108.77343 * 54.63452 * 13 12 11 15 15 C 1.34784 * 120.62829 * 126.41175 * 14 13 12 16 16 O 1.21276 * 119.99470 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99966 * 359.97438 * 15 14 13 18 18 C 1.50697 * 109.46886 * 179.97438 * 17 15 14 19 19 N 1.30385 * 126.18744 * 89.69080 * 18 17 15 20 20 N 1.28658 * 109.52878 * 179.88511 * 19 18 17 21 21 C 1.31237 * 109.24726 * 0.38360 * 20 19 18 22 22 C 1.47853 * 126.38012 * 179.74895 * 21 20 19 23 23 C 1.39556 * 120.14390 * 179.75124 * 22 21 20 24 24 C 1.37957 * 119.85197 * 179.73995 * 23 22 21 25 25 C 1.38352 * 120.14745 * 0.53645 * 24 23 22 26 26 C 1.38351 * 120.28458 * 359.71232 * 25 24 23 27 27 C 1.37959 * 120.14898 * 0.02703 * 26 25 24 28 28 O 1.34412 * 126.18880 * 269.99804 * 18 17 15 29 29 C 1.46919 * 118.73982 * 306.39079 * 14 13 12 30 30 H 0.97009 * 119.99883 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.35101 * 61.14545 * 11 9 7 32 32 H 1.09002 * 109.45432 * 301.25699 * 11 9 7 33 33 H 1.09002 * 109.49876 * 178.74890 * 12 11 9 34 34 H 1.09001 * 109.49731 * 58.65147 * 12 11 9 35 35 H 1.08998 * 109.58966 * 294.84519 * 13 12 11 36 36 H 1.09007 * 109.70227 * 174.48874 * 13 12 11 37 37 H 1.09000 * 109.47595 * 299.99863 * 17 15 14 38 38 H 1.09005 * 109.47205 * 60.00098 * 17 15 14 39 39 H 1.08003 * 120.06825 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.92516 * 180.27350 * 24 23 22 41 41 H 1.07998 * 119.85673 * 179.69664 * 25 24 23 42 42 H 1.08007 * 119.92580 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.07543 * 179.97438 * 27 26 25 44 44 H 1.09002 * 109.58751 * 173.39743 * 29 14 13 45 45 H 1.08996 * 109.58750 * 293.67928 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6247 -2.5582 -0.8907 11 6 2.2425 -3.6652 0.0015 12 6 1.4783 -4.9909 -0.0278 13 6 0.6027 -5.0988 1.2245 14 7 -0.2557 -3.9091 1.3052 15 6 -1.5922 -4.0337 1.4277 16 8 -2.2899 -3.0439 1.4938 17 6 -2.2194 -5.4028 1.4824 18 6 -3.7138 -5.2656 1.6205 19 7 -4.5733 -5.1874 0.6432 20 7 -5.7620 -5.0803 1.1234 21 6 -5.7005 -5.0783 2.4343 22 6 -6.8434 -4.9675 3.3658 23 6 -6.6280 -4.9846 4.7445 24 6 -7.6983 -4.8754 5.6081 25 6 -8.9840 -4.7603 5.1102 26 6 -9.2047 -4.7480 3.7445 27 6 -8.1427 -4.8510 2.8700 28 8 -4.4011 -5.1957 2.7735 29 6 0.3704 -2.5812 1.2504 30 1 -0.4850 0.8401 0.0004 31 1 2.8535 -3.6182 0.9031 32 1 2.8850 -3.5970 -0.8763 33 1 2.1869 -5.8189 -0.0487 34 1 0.8484 -5.0280 -0.9166 35 1 1.2362 -5.1531 2.1098 36 1 -0.0173 -5.9933 1.1634 37 1 -1.9873 -5.9458 0.5662 38 1 -1.8245 -5.9495 2.3388 39 1 -5.6253 -5.0792 5.1344 40 1 -7.5325 -4.8840 6.6753 41 1 -9.8188 -4.6800 5.7906 42 1 -10.2108 -4.6575 3.3621 43 1 -8.3165 -4.8417 1.8040 44 1 -0.4028 -1.8142 1.2040 45 1 0.9830 -2.4290 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601666414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = 27.012748 kcal Electronic energy + Delta-G solvation = -28688.636134 eV Core-core repulsion = 24672.895150 eV Total energy + Delta-G solvation = -4015.740984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.12899 -39.62778 -39.37612 -36.86292 -36.15440 -33.70764 -33.31361 -31.96691 -31.45934 -31.36810 -29.84796 -28.31380 -25.14214 -24.78563 -24.40756 -23.27563 -22.15573 -21.87651 -21.82510 -19.95983 -18.48138 -18.06192 -17.55476 -16.70997 -16.61796 -16.12456 -16.09121 -15.60022 -15.05971 -14.99020 -14.56230 -14.23033 -13.96411 -13.82221 -13.79063 -13.48645 -13.27411 -12.89295 -12.65637 -12.58849 -12.36941 -12.04193 -11.95829 -11.91472 -11.79192 -11.50980 -11.05336 -10.96035 -10.92339 -10.57169 -10.46453 -10.42000 -10.27610 -9.95412 -9.48609 -9.36572 -9.16635 -9.00519 -8.70217 -8.46346 -7.87407 -6.01670 -4.11141 0.27493 1.00128 1.51669 2.08182 2.44707 3.00027 3.30368 3.36969 3.37976 3.43237 3.47149 3.71933 4.21354 4.40999 4.50690 4.56018 4.69546 4.73456 4.82647 4.98244 5.01631 5.13585 5.20381 5.28237 5.29370 5.36020 5.42041 5.50300 5.55734 5.57811 5.65278 5.90743 6.02846 6.05824 6.09032 6.09414 6.24866 6.48560 6.54212 6.59935 6.78182 6.92087 7.05162 7.16990 7.58609 7.82347 7.93922 8.11235 8.28057 8.34452 8.65388 8.92853 9.54840 11.03442 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.002441 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.446538 B =11468.985022 C =12572.360253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.105 3.895 14 N -0.600 5.600 15 C 0.510 3.490 16 O -0.526 6.526 17 C -0.050 4.050 18 C 0.200 3.800 19 N -0.271 5.271 20 N -0.271 5.271 21 C 0.200 3.800 22 C -0.018 4.018 23 C -0.085 4.085 24 C -0.121 4.121 25 C -0.099 4.099 26 C -0.121 4.121 27 C -0.068 4.068 28 O -0.215 6.215 29 C 0.112 3.888 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.139 0.861 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.123 0.877 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 -15.968 10.518 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.019 4.019 14 N -0.333 5.333 15 C 0.294 3.706 16 O -0.402 6.402 17 C -0.092 4.092 18 C -0.011 4.011 19 N -0.118 5.118 20 N -0.118 5.118 21 C -0.008 4.008 22 C -0.019 4.019 23 C -0.105 4.105 24 C -0.139 4.139 25 C -0.118 4.118 26 C -0.139 4.139 27 C -0.088 4.088 28 O -0.094 6.094 29 C -0.008 4.008 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.158 0.842 44 H 0.141 0.859 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.946 -15.252 9.324 22.072 hybrid contribution 1.158 0.879 1.124 1.837 sum -11.789 -14.373 10.448 21.324 Atomic orbital electron populations 1.69871 1.05752 1.27053 1.49000 1.25062 0.94879 0.99315 0.94792 0.86643 0.79560 0.83142 0.78582 1.20233 1.21257 1.20248 1.21018 0.92868 0.90051 1.52180 0.92351 1.18973 0.92622 0.92364 0.93934 0.95231 1.21633 0.98584 0.93984 1.00698 1.21951 0.98702 0.99262 0.97373 1.21736 0.93730 0.87359 0.99044 1.48477 1.04643 1.09470 1.70728 1.19821 0.83039 0.89325 0.78420 1.90790 1.60975 1.38993 1.49441 1.20316 0.81883 0.99771 1.07209 1.27064 0.97467 0.98369 0.78151 1.74395 0.94769 1.16432 1.26198 1.74669 1.15395 1.16569 1.05211 1.25355 0.82027 1.01104 0.92299 1.17253 0.88130 1.06104 0.90456 1.21304 1.00269 0.97409 0.91477 1.21098 0.92250 1.00526 1.00040 1.21405 0.97211 0.97511 0.95641 1.21130 0.99043 1.00558 0.93167 1.21232 0.90142 0.96128 1.01278 1.84778 1.18756 1.69271 1.36617 1.22370 0.98759 0.80845 0.98783 0.92527 0.93133 0.92884 0.91976 0.91908 0.91546 0.91125 0.84350 0.85874 0.84978 0.85024 0.85316 0.84840 0.84165 0.85898 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 11.39 55.43 0.63 -25.16 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.97 8.57 -34.44 -0.30 -14.26 16 8 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 9 C 0.04 0.97 2.25 -91.63 -0.21 0.76 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.10 5.11 -26.67 -0.14 -2.24 16 12 C -0.13 -1.97 6.08 -26.61 -0.16 -2.14 16 13 C 0.10 1.42 6.34 -3.71 -0.02 1.40 16 14 N -0.60 -11.27 2.97 -172.77 -0.51 -11.79 16 15 C 0.51 9.79 7.69 -10.98 -0.08 9.70 16 16 O -0.53 -12.98 15.45 5.56 0.09 -12.90 16 17 C -0.05 -0.68 4.67 -29.04 -0.14 -0.82 16 18 C 0.20 3.30 6.97 -12.89 -0.09 3.21 16 19 N -0.27 -5.03 12.22 32.58 0.40 -4.63 16 20 N -0.27 -4.77 11.92 32.07 0.38 -4.39 16 21 C 0.20 3.11 7.99 -13.87 -0.11 3.00 16 22 C -0.02 -0.22 5.87 -104.98 -0.62 -0.83 16 23 C -0.08 -0.86 9.73 -39.19 -0.38 -1.24 16 24 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 25 C -0.10 -0.69 10.04 -39.50 -0.40 -1.08 16 26 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 27 C -0.07 -0.71 9.70 -39.19 -0.38 -1.09 16 28 O -0.22 -3.43 10.67 4.03 0.04 -3.39 16 29 C 0.11 2.64 5.39 -3.71 -0.02 2.62 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.69 5.93 -51.92 -0.31 0.38 16 37 H 0.14 1.50 7.70 -51.93 -0.40 1.10 16 38 H 0.12 1.15 7.94 -51.93 -0.41 0.74 16 39 H 0.13 1.24 7.94 -52.48 -0.42 0.82 16 40 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.14 1.42 7.87 -52.48 -0.41 1.01 16 44 H 0.12 3.45 5.12 -51.93 -0.27 3.19 16 45 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -35.24 376.97 -8.23 -43.46 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.98 Total: 0.89 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.93 Total: -4.02 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.90 Total: -45.97 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.13 Total: -16.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.24 -8.23 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.475 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds