Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00332 * 2 1 4 4 H 1.48499 * 109.47160 * 239.99935 * 3 2 1 5 5 H 1.48497 * 109.47116 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47285 * 120.00433 * 3 2 1 7 7 C 1.37877 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99716 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52356 * 60.08432 * 9 7 2 11 11 C 1.53070 * 109.62238 * 180.10801 * 9 7 2 12 12 C 1.53039 * 109.65812 * 181.16791 * 11 9 7 13 13 C 1.53191 * 109.31416 * 298.69913 * 12 11 9 14 14 N 1.46928 * 108.77343 * 54.63452 * 13 12 11 15 15 C 1.34784 * 120.62829 * 126.41175 * 14 13 12 16 16 O 1.21276 * 119.99470 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99966 * 359.97438 * 15 14 13 18 18 C 1.50697 * 109.46886 * 179.97438 * 17 15 14 19 19 N 1.30385 * 126.18744 * 89.69080 * 18 17 15 20 20 N 1.28658 * 109.52878 * 179.88511 * 19 18 17 21 21 C 1.31237 * 109.24726 * 0.38360 * 20 19 18 22 22 C 1.47853 * 126.38012 * 179.74895 * 21 20 19 23 23 C 1.39556 * 120.14390 * 179.75124 * 22 21 20 24 24 C 1.37957 * 119.85197 * 179.73995 * 23 22 21 25 25 C 1.38352 * 120.14745 * 0.53645 * 24 23 22 26 26 C 1.38351 * 120.28458 * 359.71232 * 25 24 23 27 27 C 1.37959 * 120.14898 * 0.02703 * 26 25 24 28 28 O 1.34412 * 126.18880 * 269.99804 * 18 17 15 29 29 C 1.46919 * 118.73982 * 306.39079 * 14 13 12 30 30 H 0.97009 * 119.99883 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.35101 * 61.14545 * 11 9 7 32 32 H 1.09002 * 109.45432 * 301.25699 * 11 9 7 33 33 H 1.09002 * 109.49876 * 178.74890 * 12 11 9 34 34 H 1.09001 * 109.49731 * 58.65147 * 12 11 9 35 35 H 1.08998 * 109.58966 * 294.84519 * 13 12 11 36 36 H 1.09007 * 109.70227 * 174.48874 * 13 12 11 37 37 H 1.09000 * 109.47595 * 299.99863 * 17 15 14 38 38 H 1.09005 * 109.47205 * 60.00098 * 17 15 14 39 39 H 1.08003 * 120.06825 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.92516 * 180.27350 * 24 23 22 41 41 H 1.07998 * 119.85673 * 179.69664 * 25 24 23 42 42 H 1.08007 * 119.92580 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.07543 * 179.97438 * 27 26 25 44 44 H 1.09002 * 109.58751 * 173.39743 * 29 14 13 45 45 H 1.08996 * 109.58750 * 293.67928 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6247 -2.5582 -0.8907 11 6 2.2425 -3.6652 0.0015 12 6 1.4783 -4.9909 -0.0278 13 6 0.6027 -5.0988 1.2245 14 7 -0.2557 -3.9091 1.3052 15 6 -1.5922 -4.0337 1.4277 16 8 -2.2899 -3.0439 1.4938 17 6 -2.2194 -5.4028 1.4824 18 6 -3.7138 -5.2656 1.6205 19 7 -4.5733 -5.1874 0.6432 20 7 -5.7620 -5.0803 1.1234 21 6 -5.7005 -5.0783 2.4343 22 6 -6.8434 -4.9675 3.3658 23 6 -6.6280 -4.9846 4.7445 24 6 -7.6983 -4.8754 5.6081 25 6 -8.9840 -4.7603 5.1102 26 6 -9.2047 -4.7480 3.7445 27 6 -8.1427 -4.8510 2.8700 28 8 -4.4011 -5.1957 2.7735 29 6 0.3704 -2.5812 1.2504 30 1 -0.4850 0.8401 0.0004 31 1 2.8535 -3.6182 0.9031 32 1 2.8850 -3.5970 -0.8763 33 1 2.1869 -5.8189 -0.0487 34 1 0.8484 -5.0280 -0.9166 35 1 1.2362 -5.1531 2.1098 36 1 -0.0173 -5.9933 1.1634 37 1 -1.9873 -5.9458 0.5662 38 1 -1.8245 -5.9495 2.3388 39 1 -5.6253 -5.0792 5.1344 40 1 -7.5325 -4.8840 6.6753 41 1 -9.8188 -4.6800 5.7906 42 1 -10.2108 -4.6575 3.3621 43 1 -8.3165 -4.8417 1.8040 44 1 -0.4028 -1.8142 1.2040 45 1 0.9830 -2.4290 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = 0.399837 kcal Electronic energy + Delta-G solvation = -28689.790156 eV Core-core repulsion = 24672.895150 eV Total energy + Delta-G solvation = -4016.895006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.34058 -41.12176 -40.09212 -38.44944 -37.39277 -35.41384 -34.57632 -33.54397 -32.51105 -32.04173 -31.46887 -29.50036 -27.04158 -26.18889 -25.49133 -24.34207 -23.44363 -23.04706 -22.75053 -21.53876 -19.94205 -18.99917 -18.91378 -18.36275 -17.84084 -17.63698 -16.96622 -16.87225 -16.61747 -16.30237 -15.88657 -15.26721 -15.19073 -14.98633 -14.90070 -14.53531 -14.47275 -14.27356 -14.07320 -13.97755 -13.63403 -13.51827 -13.34332 -13.12478 -12.87102 -12.72272 -12.62089 -12.29212 -12.27800 -12.24643 -12.00361 -11.79210 -11.63204 -11.50291 -11.18268 -10.95509 -10.72022 -10.52990 -10.03753 -9.65452 -9.47325 -8.13167 -6.30567 -0.66397 0.33714 0.46822 0.97777 1.28411 1.38566 1.39895 1.48414 1.55716 2.12700 2.39927 2.56855 2.74070 3.14484 3.15208 3.45528 3.63371 3.90528 3.92649 4.02913 4.08901 4.09432 4.20339 4.25638 4.32209 4.36548 4.40242 4.42802 4.52300 4.63288 4.77269 4.79846 4.82958 4.89106 5.01166 5.12754 5.27273 5.30697 5.32549 5.36220 5.38070 5.44954 5.52164 5.61979 5.86538 5.89845 5.99141 6.30848 6.55655 6.83187 7.04621 7.18036 7.40194 8.89463 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.002441 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.446538 B =11468.985022 C =12572.360253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.037 3.963 10 H -0.016 1.016 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.096 3.904 14 N -0.601 5.601 15 C 0.501 3.499 16 O -0.596 6.596 17 C -0.035 4.035 18 C 0.191 3.809 19 N -0.306 5.306 20 N -0.308 5.308 21 C 0.209 3.791 22 C -0.056 4.056 23 C -0.093 4.093 24 C -0.119 4.119 25 C -0.085 4.085 26 C -0.119 4.119 27 C -0.081 4.081 28 O -0.219 6.219 29 C 0.125 3.875 30 H 0.258 0.742 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.133 0.867 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.131 0.869 44 H 0.071 0.929 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 -18.590 12.854 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.018 3.982 10 H 0.002 0.998 11 C -0.144 4.144 12 C -0.167 4.167 13 C -0.025 4.025 14 N -0.332 5.332 15 C 0.288 3.712 16 O -0.477 6.477 17 C -0.075 4.075 18 C -0.020 4.020 19 N -0.152 5.152 20 N -0.154 5.154 21 C 0.002 3.998 22 C -0.057 4.057 23 C -0.112 4.112 24 C -0.137 4.137 25 C -0.103 4.103 26 C -0.137 4.137 27 C -0.100 4.100 28 O -0.099 6.099 29 C 0.002 3.998 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.191 0.809 38 H 0.195 0.805 39 H 0.151 0.849 40 H 0.180 0.820 41 H 0.184 0.816 42 H 0.180 0.820 43 H 0.149 0.851 44 H 0.089 0.911 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.640 -17.934 11.640 24.837 hybrid contribution 0.981 1.705 0.478 2.024 sum -11.660 -16.229 12.118 23.370 Atomic orbital electron populations 1.70099 1.07531 1.27200 1.50766 1.25923 0.95496 1.03065 0.94702 0.85627 0.78245 0.78720 0.79213 1.19225 1.21795 1.18951 1.21516 0.93347 0.91508 1.50915 0.91801 1.18920 0.93173 0.93981 0.92129 0.99825 1.21529 0.97631 0.94288 1.00979 1.21937 0.99196 0.97977 0.97575 1.22229 0.94093 0.86694 0.99461 1.48466 1.05336 1.09387 1.70024 1.20780 0.82733 0.90940 0.76718 1.90763 1.62540 1.41974 1.52426 1.20486 0.79575 0.96204 1.11249 1.27594 0.98493 0.97972 0.77932 1.74281 0.95588 1.17686 1.27683 1.74578 1.15433 1.19000 1.06436 1.26110 0.82631 0.98730 0.92367 1.17536 0.87696 1.09488 0.91026 1.21467 1.01387 0.97580 0.90813 1.21493 0.91836 0.99150 1.01195 1.21901 0.98030 0.94642 0.95735 1.21495 0.99422 0.99305 0.93435 1.21346 0.90363 0.96780 1.01531 1.84778 1.19010 1.69556 1.36566 1.21712 0.97100 0.82769 0.98183 0.93343 0.92221 0.93194 0.87297 0.92933 0.89189 0.85840 0.80949 0.80511 0.84926 0.82048 0.81579 0.82040 0.85134 0.91066 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.23 11.39 21.45 0.24 -56.98 16 2 C 0.01 0.42 5.30 84.66 0.45 0.87 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.53 -29.43 8.57 25.60 0.22 -29.21 16 8 H 0.06 3.35 7.75 -2.91 -0.02 3.33 16 9 C 0.04 1.86 2.25 -11.45 -0.03 1.83 16 10 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 11 C -0.11 -3.90 5.11 30.63 0.16 -3.74 16 12 C -0.13 -3.34 6.08 30.67 0.19 -3.16 16 13 C 0.10 2.23 6.34 86.36 0.55 2.77 16 14 N -0.60 -22.28 2.97 -818.91 -2.44 -24.71 16 15 C 0.50 19.39 7.69 87.66 0.67 20.07 16 16 O -0.60 -31.31 15.45 -3.02 -0.05 -31.36 16 17 C -0.04 -0.87 4.67 29.10 0.14 -0.73 16 18 C 0.19 6.38 6.97 88.32 0.62 6.99 16 19 N -0.31 -11.87 12.22 -165.33 -2.02 -13.89 16 20 N -0.31 -11.54 11.92 -166.30 -1.98 -13.52 16 21 C 0.21 6.85 7.99 87.33 0.70 7.55 16 22 C -0.06 -1.40 5.87 -20.09 -0.12 -1.51 16 23 C -0.09 -1.81 9.73 22.52 0.22 -1.59 16 24 C -0.12 -1.50 10.03 22.23 0.22 -1.28 16 25 C -0.08 -0.87 10.04 22.32 0.22 -0.65 16 26 C -0.12 -1.58 10.03 22.23 0.22 -1.36 16 27 C -0.08 -1.68 9.70 22.52 0.22 -1.47 16 28 O -0.22 -7.16 10.67 -8.48 -0.09 -7.25 16 29 C 0.12 6.12 5.39 86.36 0.47 6.58 16 30 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.12 1.62 5.93 -2.38 -0.01 1.61 16 37 H 0.17 3.10 7.70 -2.39 -0.02 3.08 16 38 H 0.18 2.44 7.94 -2.38 -0.02 2.42 16 39 H 0.13 2.45 7.94 -2.91 -0.02 2.43 16 40 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.13 2.86 7.87 -2.91 -0.02 2.84 16 44 H 0.07 4.30 5.12 -2.39 -0.01 4.29 16 45 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -88.66 376.97 1.82 -86.84 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.01 Total: 12.03 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.11 Total: 1.96 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -6.19 Total: -109.11 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.14 Total: -38.61 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -88.66 1.82 -86.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.242 kcal (2) G-P(sol) polarization free energy of solvation -88.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds