Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00129 * 2 1 4 4 H 1.48498 * 109.47331 * 239.99824 * 3 2 1 5 5 H 1.48504 * 109.46681 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47166 * 119.99561 * 3 2 1 7 7 C 1.37879 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00053 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47408 * 179.97438 * 9 7 2 11 11 C 1.46893 * 111.00435 * 169.99789 * 10 9 7 12 12 C 1.53241 * 109.34433 * 187.25658 * 11 10 9 13 13 N 1.47081 * 108.51682 * 306.17248 * 12 11 10 14 14 C 1.34776 * 120.87831 * 231.18410 * 13 12 11 15 15 O 1.21553 * 119.99989 * 5.73017 * 14 13 12 16 16 C 1.47867 * 119.99999 * 185.72356 * 14 13 12 17 17 C 1.39686 * 120.07061 * 40.21555 * 16 14 13 18 18 C 1.38056 * 120.14080 * 180.25382 * 17 16 14 19 19 C 1.38097 * 120.30257 * 359.49170 * 18 17 16 20 20 C 1.39640 * 120.14650 * 0.25457 * 19 18 17 21 21 C 1.47845 * 120.07507 * 179.97438 * 20 19 18 22 22 C 1.35769 * 126.58193 * 359.97438 * 21 20 19 23 23 N 1.34145 * 107.51639 * 180.02562 * 22 21 20 24 24 C 1.30364 * 108.90193 * 0.02562 * 23 22 21 25 25 O 1.33997 * 109.03346 * 359.72426 * 24 23 22 26 26 C 1.39311 * 120.07549 * 219.95957 * 16 14 13 27 27 C 1.47078 * 118.23802 * 51.45680 * 13 12 11 28 28 C 1.46900 * 111.00153 * 294.30678 * 10 9 7 29 29 H 0.96999 * 120.00392 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46860 * 59.99547 * 9 7 2 31 31 H 1.08999 * 109.46934 * 299.99955 * 9 7 2 32 32 H 1.08997 * 109.49374 * 67.29177 * 11 10 9 33 33 H 1.09011 * 109.51606 * 307.23188 * 11 10 9 34 34 H 1.09002 * 109.62632 * 186.46491 * 12 11 10 35 35 H 1.08995 * 109.62282 * 65.87947 * 12 11 10 36 36 H 1.07996 * 119.92951 * 0.02562 * 17 16 14 37 37 H 1.08005 * 119.84457 * 179.76824 * 18 17 16 38 38 H 1.07999 * 119.92575 * 180.27699 * 19 18 17 39 39 H 1.07995 * 126.24240 * 359.97438 * 22 21 20 40 40 H 1.07995 * 125.47881 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.14924 * 0.02562 * 26 16 14 42 42 H 1.08999 * 109.62914 * 68.25359 * 27 13 12 43 43 H 1.09006 * 109.62417 * 188.82845 * 27 13 12 44 44 H 1.09004 * 109.48638 * 292.70201 * 28 10 9 45 45 H 1.09000 * 109.49606 * 52.77727 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5213 -4.8935 0.2387 12 6 2.5639 -6.0032 0.4116 13 7 3.4617 -5.9862 -0.7533 14 6 3.7120 -7.1123 -1.4501 15 8 3.1145 -8.1369 -1.1844 16 6 4.7135 -7.1013 -2.5380 17 6 5.9079 -6.3940 -2.3827 18 6 6.8416 -6.3784 -3.3995 19 6 6.6067 -7.0695 -4.5718 20 6 5.4192 -7.7851 -4.7382 21 6 5.1691 -8.5239 -5.9941 22 6 5.9967 -8.5979 -7.0679 23 7 5.3943 -9.3639 -7.9898 24 6 4.2414 -9.7564 -7.5250 25 8 4.0751 -9.2590 -6.2919 26 6 4.4701 -7.8008 -3.7180 27 6 4.0838 -4.7089 -1.1338 28 6 2.9768 -3.6491 -1.2493 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 0.8797 -5.1264 -0.6111 33 1 0.9157 -4.8194 1.1421 34 1 2.0632 -6.9694 0.4740 35 1 3.1394 -5.8264 1.3201 36 1 6.0998 -5.8551 -1.4667 37 1 7.7619 -5.8268 -3.2758 38 1 7.3433 -7.0569 -5.3616 39 1 6.9631 -8.1255 -7.1629 40 1 3.5361 -10.3856 -8.0475 41 1 3.5499 -8.3523 -3.8417 42 1 4.8028 -4.4102 -0.3709 43 1 4.5887 -4.8192 -2.0935 44 1 2.3149 -3.8993 -2.0784 45 1 3.4272 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = 36.823645 kcal Electronic energy + Delta-G solvation = -28699.738884 eV Core-core repulsion = 24684.423333 eV Total energy + Delta-G solvation = -4015.315551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.63854 -40.62072 -38.83022 -37.47824 -35.14327 -34.59681 -33.16494 -32.39597 -31.63824 -30.71196 -29.03052 -28.26677 -25.83737 -24.30602 -24.13487 -23.24788 -22.73616 -21.87937 -21.59911 -20.58926 -19.25237 -18.20416 -17.19190 -16.93292 -16.74383 -16.44665 -16.17777 -15.66293 -15.26753 -15.00269 -14.74610 -14.48495 -14.40905 -14.20354 -13.89197 -13.70590 -13.62512 -13.46964 -13.29197 -12.78684 -12.34910 -12.04298 -11.94608 -11.77380 -11.76943 -11.34101 -11.15184 -11.02638 -10.99385 -10.80209 -10.67738 -10.59940 -10.26350 -9.97201 -9.81128 -9.37326 -9.31880 -8.58677 -8.50241 -8.46264 -7.38932 -6.09845 -4.12332 0.19151 0.72586 1.51781 2.28103 2.32507 2.67765 2.96110 3.27864 3.32952 3.34695 3.47374 3.83460 4.15185 4.32233 4.35310 4.49484 4.60523 4.65407 4.72753 4.79869 4.96246 5.12655 5.21307 5.25676 5.29858 5.33357 5.47342 5.48256 5.55658 5.58212 5.67832 5.78970 5.88401 5.93124 5.94751 5.96744 5.99317 6.22806 6.36506 6.38246 6.42048 6.59748 7.16731 7.23420 7.28367 7.41340 7.69161 7.96272 8.06825 8.10258 8.42381 8.94320 9.52268 11.00913 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002402 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.164593 B =11655.329516 C =12287.658458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.599 5.599 14 C 0.557 3.443 15 O -0.542 6.542 16 C -0.119 4.119 17 C -0.076 4.076 18 C -0.119 4.119 19 C -0.075 4.075 20 C -0.027 4.027 21 C 0.004 3.996 22 C -0.024 4.024 23 N -0.487 5.487 24 C 0.174 3.826 25 O -0.196 6.196 26 C -0.046 4.046 27 C 0.100 3.900 28 C 0.050 3.950 29 H 0.263 0.737 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.187 0.813 40 H 0.252 0.748 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.281 -16.319 -10.336 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.332 5.332 14 C 0.345 3.655 15 O -0.421 6.421 16 C -0.122 4.122 17 C -0.095 4.095 18 C -0.137 4.137 19 C -0.094 4.094 20 C -0.027 4.027 21 C -0.049 4.049 22 C -0.164 4.164 23 N -0.215 5.215 24 C -0.051 4.051 25 O -0.083 6.083 26 C -0.065 4.065 27 C -0.022 4.022 28 C -0.079 4.079 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.204 0.796 40 H 0.268 0.732 41 H 0.154 0.846 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.044 0.956 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.283 -16.824 -10.356 23.806 hybrid contribution -0.589 1.043 -0.129 1.205 sum 12.694 -15.780 -10.485 22.806 Atomic orbital electron populations 1.69941 1.06111 1.27029 1.50550 1.24997 0.94865 0.99372 0.95321 0.86550 0.79442 0.82705 0.78645 1.20249 1.21352 1.20114 1.21083 0.93395 0.89849 1.50647 0.91852 1.19724 0.89990 0.87120 0.96261 1.62091 1.28123 1.02729 1.33123 1.22407 0.94935 0.90489 1.01068 1.21818 0.91744 0.99759 0.87084 1.48141 1.46558 1.08336 1.30129 1.18269 0.82147 0.83459 0.81635 1.90769 1.50875 1.32001 1.68431 1.19860 0.96144 1.00778 0.95381 1.21660 0.92370 0.95722 0.99710 1.21032 0.99895 0.99849 0.92885 1.21189 0.95075 0.95005 0.98089 1.17473 0.95996 0.99335 0.89926 1.21406 0.87148 0.99086 0.97302 1.23301 1.01906 1.01678 0.89511 1.70366 1.06721 1.13170 1.31215 1.28180 0.96506 0.99528 0.80878 1.84515 1.39492 1.50946 1.33297 1.21268 0.98747 0.95549 0.90945 1.22456 0.96534 0.82445 1.00786 1.22423 0.95067 0.98972 0.91464 0.92766 0.99112 0.94977 0.95467 0.89905 0.89236 0.90598 0.84269 0.84247 0.84813 0.79586 0.73217 0.84570 0.90282 0.89504 0.95638 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.65 8.41 -34.44 -0.29 -13.94 16 8 H 0.06 1.64 7.13 -52.49 -0.37 1.27 16 9 C 0.19 4.84 4.72 -4.98 -0.02 4.82 16 10 N -0.54 -10.82 4.62 -235.47 -1.09 -11.90 16 11 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 12 C 0.12 1.78 6.61 -3.60 -0.02 1.76 16 13 N -0.60 -8.81 3.00 -173.29 -0.52 -9.33 16 14 C 0.56 8.41 7.33 -12.32 -0.09 8.32 16 15 O -0.54 -9.81 16.38 5.32 0.09 -9.73 16 16 C -0.12 -1.45 5.12 -105.02 -0.54 -1.99 16 17 C -0.08 -0.72 7.40 -39.11 -0.29 -1.01 16 18 C -0.12 -0.87 10.02 -39.70 -0.40 -1.27 16 19 C -0.08 -0.57 9.57 -39.11 -0.37 -0.95 16 20 C -0.03 -0.27 5.87 -105.03 -0.62 -0.88 16 21 C 0.00 0.04 7.07 -36.54 -0.26 -0.22 16 22 C -0.02 -0.22 11.29 -17.43 -0.20 -0.42 16 23 N -0.49 -4.87 11.27 -14.68 -0.17 -5.03 16 24 C 0.17 1.38 13.22 52.14 0.69 2.07 16 25 O -0.20 -2.02 10.59 4.22 0.04 -1.97 16 26 C -0.05 -0.55 9.32 -38.77 -0.36 -0.91 16 27 C 0.10 1.36 5.04 -3.37 -0.02 1.34 16 28 C 0.05 0.88 5.47 -3.47 -0.02 0.87 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.40 7.99 -51.92 -0.41 0.99 16 34 H 0.09 1.34 7.04 -51.93 -0.37 0.98 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.14 1.15 6.53 -52.49 -0.34 0.81 16 37 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.13 0.64 7.02 -52.49 -0.37 0.27 16 39 H 0.19 1.15 7.29 -52.49 -0.38 0.76 16 40 H 0.25 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.14 1.74 7.94 -52.49 -0.42 1.32 16 42 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 43 H 0.09 0.99 4.91 -51.93 -0.26 0.74 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -33.94 373.05 -9.00 -42.94 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.77 Total: -0.85 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.92 Total: -0.29 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -1.04 Total: -51.54 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.13 Total: -11.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.94 -9.00 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.766 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds