Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00129 * 2 1 4 4 H 1.48498 * 109.47331 * 239.99824 * 3 2 1 5 5 H 1.48504 * 109.46681 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47166 * 119.99561 * 3 2 1 7 7 C 1.37879 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00053 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47408 * 179.97438 * 9 7 2 11 11 C 1.46893 * 111.00435 * 169.99789 * 10 9 7 12 12 C 1.53241 * 109.34433 * 187.25658 * 11 10 9 13 13 N 1.47081 * 108.51682 * 306.17248 * 12 11 10 14 14 C 1.34776 * 120.87831 * 231.18410 * 13 12 11 15 15 O 1.21553 * 119.99989 * 5.73017 * 14 13 12 16 16 C 1.47867 * 119.99999 * 185.72356 * 14 13 12 17 17 C 1.39686 * 120.07061 * 40.21555 * 16 14 13 18 18 C 1.38056 * 120.14080 * 180.25382 * 17 16 14 19 19 C 1.38097 * 120.30257 * 359.49170 * 18 17 16 20 20 C 1.39640 * 120.14650 * 0.25457 * 19 18 17 21 21 C 1.47845 * 120.07507 * 179.97438 * 20 19 18 22 22 C 1.35769 * 126.58193 * 359.97438 * 21 20 19 23 23 N 1.34145 * 107.51639 * 180.02562 * 22 21 20 24 24 C 1.30364 * 108.90193 * 0.02562 * 23 22 21 25 25 O 1.33997 * 109.03346 * 359.72426 * 24 23 22 26 26 C 1.39311 * 120.07549 * 219.95957 * 16 14 13 27 27 C 1.47078 * 118.23802 * 51.45680 * 13 12 11 28 28 C 1.46900 * 111.00153 * 294.30678 * 10 9 7 29 29 H 0.96999 * 120.00392 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46860 * 59.99547 * 9 7 2 31 31 H 1.08999 * 109.46934 * 299.99955 * 9 7 2 32 32 H 1.08997 * 109.49374 * 67.29177 * 11 10 9 33 33 H 1.09011 * 109.51606 * 307.23188 * 11 10 9 34 34 H 1.09002 * 109.62632 * 186.46491 * 12 11 10 35 35 H 1.08995 * 109.62282 * 65.87947 * 12 11 10 36 36 H 1.07996 * 119.92951 * 0.02562 * 17 16 14 37 37 H 1.08005 * 119.84457 * 179.76824 * 18 17 16 38 38 H 1.07999 * 119.92575 * 180.27699 * 19 18 17 39 39 H 1.07995 * 126.24240 * 359.97438 * 22 21 20 40 40 H 1.07995 * 125.47881 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.14924 * 0.02562 * 26 16 14 42 42 H 1.08999 * 109.62914 * 68.25359 * 27 13 12 43 43 H 1.09006 * 109.62417 * 188.82845 * 27 13 12 44 44 H 1.09004 * 109.48638 * 292.70201 * 28 10 9 45 45 H 1.09000 * 109.49606 * 52.77727 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5213 -4.8935 0.2387 12 6 2.5639 -6.0032 0.4116 13 7 3.4617 -5.9862 -0.7533 14 6 3.7120 -7.1123 -1.4501 15 8 3.1145 -8.1369 -1.1844 16 6 4.7135 -7.1013 -2.5380 17 6 5.9079 -6.3940 -2.3827 18 6 6.8416 -6.3784 -3.3995 19 6 6.6067 -7.0695 -4.5718 20 6 5.4192 -7.7851 -4.7382 21 6 5.1691 -8.5239 -5.9941 22 6 5.9967 -8.5979 -7.0679 23 7 5.3943 -9.3639 -7.9898 24 6 4.2414 -9.7564 -7.5250 25 8 4.0751 -9.2590 -6.2919 26 6 4.4701 -7.8008 -3.7180 27 6 4.0838 -4.7089 -1.1338 28 6 2.9768 -3.6491 -1.2493 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 0.8797 -5.1264 -0.6111 33 1 0.9157 -4.8194 1.1421 34 1 2.0632 -6.9694 0.4740 35 1 3.1394 -5.8264 1.3201 36 1 6.0998 -5.8551 -1.4667 37 1 7.7619 -5.8268 -3.2758 38 1 7.3433 -7.0569 -5.3616 39 1 6.9631 -8.1255 -7.1629 40 1 3.5361 -10.3856 -8.0475 41 1 3.5499 -8.3523 -3.8417 42 1 4.8028 -4.4102 -0.3709 43 1 4.5887 -4.8192 -2.0935 44 1 2.3149 -3.8993 -2.0784 45 1 3.4272 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = 12.128759 kcal Electronic energy + Delta-G solvation = -28700.809735 eV Core-core repulsion = 24684.423333 eV Total energy + Delta-G solvation = -4016.386402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.30895 -41.69140 -39.79204 -38.85146 -36.09989 -35.83476 -34.55349 -33.75973 -32.51647 -31.88291 -30.10532 -29.60713 -27.45233 -25.27910 -25.08560 -24.39022 -23.88474 -23.13607 -22.42915 -21.81833 -20.34399 -19.07326 -18.49182 -18.15236 -17.63810 -17.58063 -17.15404 -16.70703 -16.65251 -16.15998 -16.00915 -15.93685 -15.38103 -15.34473 -15.02293 -14.93195 -14.68672 -14.37244 -14.25477 -14.09327 -13.76977 -13.52117 -13.06433 -12.84636 -12.75798 -12.59282 -12.53151 -12.47777 -12.37292 -12.31572 -12.16183 -11.78692 -11.69596 -11.31603 -11.13669 -10.85513 -10.60667 -10.13212 -9.83305 -9.16302 -9.10917 -8.19718 -6.30533 -0.48818 -0.06435 0.84839 1.44554 1.47707 1.52949 1.55344 1.68493 1.72480 1.87335 2.41729 2.70433 3.12294 3.18624 3.25439 3.34009 3.57696 3.81210 3.86677 3.97793 3.98978 4.07198 4.12797 4.19561 4.22138 4.29072 4.38616 4.45359 4.55064 4.68145 4.72589 4.80458 4.82904 4.86930 4.90687 4.97140 5.15482 5.18857 5.24124 5.27747 5.30001 5.32320 5.38926 5.63597 5.74064 6.01102 6.16616 6.31314 6.52573 6.63212 6.85061 6.93245 7.39643 8.91595 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002402 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.164593 B =11655.329516 C =12287.658458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.073 0.927 9 C 0.208 3.792 10 N -0.534 5.534 11 C 0.042 3.958 12 C 0.127 3.873 13 N -0.602 5.602 14 C 0.556 3.444 15 O -0.582 6.582 16 C -0.140 4.140 17 C -0.077 4.077 18 C -0.104 4.104 19 C -0.064 4.064 20 C -0.032 4.032 21 C -0.024 4.024 22 C -0.018 4.018 23 N -0.518 5.518 24 C 0.184 3.816 25 O -0.218 6.218 26 C -0.068 4.068 27 C 0.114 3.886 28 C 0.048 3.952 29 H 0.264 0.736 30 H -0.044 1.044 31 H 0.005 0.995 32 H 0.010 0.990 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.155 0.845 37 H 0.180 0.820 38 H 0.170 0.830 39 H 0.215 0.785 40 H 0.292 0.708 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.007 0.993 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.264 -15.711 -11.343 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.091 0.909 9 C 0.081 3.919 10 N -0.259 5.259 11 C -0.087 4.087 12 C 0.004 3.996 13 N -0.333 5.333 14 C 0.346 3.654 15 O -0.463 6.463 16 C -0.143 4.143 17 C -0.096 4.096 18 C -0.122 4.122 19 C -0.082 4.082 20 C -0.033 4.033 21 C -0.077 4.077 22 C -0.157 4.157 23 N -0.246 5.246 24 C -0.040 4.040 25 O -0.105 6.105 26 C -0.088 4.088 27 C -0.008 4.008 28 C -0.081 4.081 29 H 0.072 0.928 30 H -0.027 1.027 31 H 0.023 0.977 32 H 0.028 0.972 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.172 0.828 37 H 0.197 0.803 38 H 0.187 0.813 39 H 0.232 0.768 40 H 0.307 0.693 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.132 0.868 44 H 0.025 0.975 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.300 -16.224 -11.369 26.301 hybrid contribution -1.864 0.749 0.080 2.011 sum 15.436 -15.475 -11.288 24.600 Atomic orbital electron populations 1.70094 1.08000 1.27997 1.51755 1.25975 0.95687 1.03458 0.94778 0.85391 0.78061 0.77549 0.79367 1.18775 1.21501 1.19039 1.21426 0.93934 0.90490 1.50064 0.90873 1.19385 0.90122 0.89041 0.93303 1.62041 1.26917 1.02413 1.34538 1.22446 0.95659 0.90179 1.00416 1.21692 0.91414 0.98336 0.88138 1.48208 1.46422 1.08810 1.29910 1.18775 0.82129 0.82748 0.81740 1.90736 1.52621 1.33405 1.69579 1.19680 0.96883 1.03128 0.94559 1.21871 0.91476 0.95205 1.01026 1.21491 1.00376 0.98739 0.91551 1.21657 0.94340 0.93105 0.99101 1.17650 0.96519 0.99741 0.89355 1.21617 0.87700 1.00356 0.98005 1.23768 1.02522 1.00768 0.88626 1.70409 1.07776 1.14410 1.31960 1.29188 0.96546 0.98331 0.79983 1.84523 1.40144 1.51449 1.34373 1.21143 0.98901 0.96563 0.92154 1.22480 0.94923 0.80290 1.03119 1.22491 0.95612 1.00322 0.89627 0.92774 1.02671 0.97666 0.97202 0.89730 0.89316 0.88866 0.82757 0.80262 0.81288 0.76814 0.69348 0.87099 0.88030 0.86796 0.97472 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.80 13.29 21.45 0.28 -55.52 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.52 -28.12 8.41 25.60 0.22 -27.91 16 8 H 0.07 3.73 7.13 -2.91 -0.02 3.71 16 9 C 0.21 10.83 4.72 85.56 0.40 11.24 16 10 N -0.53 -22.02 4.62 -898.90 -4.15 -26.18 16 11 C 0.04 1.53 5.62 86.39 0.49 2.02 16 12 C 0.13 3.82 6.61 86.35 0.57 4.39 16 13 N -0.60 -17.39 3.00 -820.43 -2.46 -19.85 16 14 C 0.56 16.95 7.33 86.79 0.64 17.59 16 15 O -0.58 -21.94 16.38 -3.88 -0.06 -22.01 16 16 C -0.14 -3.33 5.12 -20.12 -0.10 -3.43 16 17 C -0.08 -1.22 7.40 22.58 0.17 -1.05 16 18 C -0.10 -1.05 10.02 22.19 0.22 -0.83 16 19 C -0.06 -0.74 9.57 22.57 0.22 -0.52 16 20 C -0.03 -0.60 5.87 -20.13 -0.12 -0.72 16 21 C -0.02 -0.47 7.07 24.24 0.17 -0.30 16 22 C -0.02 -0.29 11.29 83.77 0.95 0.65 16 23 N -0.52 -9.55 11.27 -315.08 -3.55 -13.10 16 24 C 0.18 2.72 13.22 130.46 1.72 4.44 16 25 O -0.22 -4.49 10.59 -7.80 -0.08 -4.58 16 26 C -0.07 -1.67 9.32 22.80 0.21 -1.46 16 27 C 0.11 2.88 5.04 86.50 0.44 3.31 16 28 C 0.05 1.72 5.47 86.54 0.47 2.19 16 29 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 30 H -0.04 -2.58 8.12 -2.39 -0.02 -2.60 16 31 H 0.01 0.30 7.97 -2.39 -0.02 0.28 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 33 H 0.08 3.00 7.99 -2.38 -0.02 2.98 16 34 H 0.09 2.73 7.04 -2.39 -0.02 2.71 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.15 1.93 6.53 -2.91 -0.02 1.91 16 37 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 38 H 0.17 0.72 7.02 -2.91 -0.02 0.70 16 39 H 0.22 1.89 7.29 -2.91 -0.02 1.87 16 40 H 0.29 1.13 8.06 -2.91 -0.02 1.10 16 41 H 0.11 3.14 7.94 -2.91 -0.02 3.12 16 42 H 0.10 2.20 8.06 -2.39 -0.02 2.18 16 43 H 0.11 2.31 4.91 -2.38 -0.01 2.30 16 44 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.09 3.37 6.67 -2.39 -0.02 3.36 16 Total: -1.00 -78.12 373.05 0.14 -77.98 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.02 Total: 8.79 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 7.12 Total: 10.00 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -9.88 Total: -114.64 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.15 Total: -26.58 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -78.12 0.14 -77.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.109 kcal (2) G-P(sol) polarization free energy of solvation -78.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds