Wall clock time and date at job start Sat Apr 11 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99733 * 2 1 4 4 H 1.48505 * 109.46747 * 273.42447 * 3 2 1 5 5 H 1.48495 * 109.47244 * 33.42048 * 3 2 1 6 6 H 1.48495 * 109.47365 * 153.42665 * 3 2 1 7 7 C 1.37875 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99871 * 354.27561 * 7 2 1 9 9 C 1.50698 * 119.99764 * 174.27892 * 7 2 1 10 10 C 1.52999 * 115.56584 * 91.24904 * 9 7 2 11 11 S 1.81396 * 109.46824 * 40.05355 * 10 9 7 12 12 O 1.42101 * 110.54763 * 284.34845 * 11 10 9 13 13 O 1.42102 * 110.54647 * 61.09885 * 11 10 9 14 14 N 1.65607 * 104.44946 * 172.72196 * 11 10 9 15 15 C 1.46927 * 120.61806 * 269.72583 * 14 11 10 16 16 C 1.53704 * 108.49821 * 125.94686 * 15 14 11 17 17 C 1.52753 * 109.31020 * 54.35441 * 16 15 14 18 18 C 1.54051 * 109.65477 * 178.51941 * 17 16 15 19 19 C 1.55034 * 103.68916 * 263.63599 * 18 17 16 20 20 C 1.54916 * 102.36376 * 323.11693 * 19 18 17 21 21 C 1.51184 * 109.99954 * 60.98232 * 17 16 15 22 22 O 1.20763 * 126.38803 * 299.51722 * 21 17 16 23 23 C 1.52746 * 110.36380 * 299.42010 * 17 16 15 24 24 C 1.46931 * 120.61555 * 89.99733 * 14 11 10 25 25 C 1.53002 * 117.49630 * 305.55706 * 9 7 2 26 26 C 1.52999 * 60.00227 * 252.51464 * 25 9 7 27 27 H 0.97006 * 120.00571 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47354 * 160.05475 * 10 9 7 29 29 H 1.08998 * 109.47054 * 280.05498 * 10 9 7 30 30 H 1.09000 * 109.59063 * 245.76738 * 15 14 11 31 31 H 1.08993 * 109.59677 * 6.20968 * 15 14 11 32 32 H 1.09002 * 109.63293 * 294.33945 * 16 15 14 33 33 H 1.09000 * 109.41400 * 174.23986 * 16 15 14 34 34 H 1.09003 * 110.58208 * 22.18551 * 18 17 16 35 35 H 1.08998 * 110.58284 * 145.08213 * 18 17 16 36 36 H 1.08995 * 110.83245 * 81.33553 * 19 18 17 37 37 H 1.09002 * 110.82955 * 204.90326 * 19 18 17 38 38 H 1.09001 * 110.44273 * 156.23101 * 20 19 18 39 39 H 1.08994 * 110.44108 * 278.63935 * 20 19 18 40 40 H 1.09007 * 109.48846 * 300.47137 * 23 17 16 41 41 H 1.09002 * 109.48420 * 180.41530 * 23 17 16 42 42 H 1.09000 * 109.59404 * 353.79050 * 24 14 11 43 43 H 1.09006 * 109.58431 * 114.07965 * 24 14 11 44 44 H 1.09007 * 117.49791 * 145.02382 * 25 9 7 45 45 H 1.09000 * 117.50073 * 0.02562 * 25 9 7 46 46 H 1.08994 * 117.49931 * 107.49080 * 26 25 9 47 47 H 1.09004 * 117.49781 * 252.49409 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4241 2.0882 -1.3976 5 1 1.4845 2.6307 0.7711 6 1 3.5810 1.4205 0.6263 7 6 2.0045 -1.1940 0.0005 8 1 1.4685 -2.1270 0.0942 9 6 3.5059 -1.1972 -0.1296 10 6 4.2829 -1.1593 1.1879 11 16 3.4625 -2.2258 2.4045 12 8 2.2917 -1.5981 2.9089 13 8 3.4339 -3.5715 1.9491 14 7 4.4995 -2.2536 3.6955 15 6 5.5479 -3.2785 3.7912 16 6 6.9012 -2.5753 3.9826 17 6 6.8171 -1.6366 5.1847 18 6 8.1808 -0.9552 5.4065 19 6 8.8558 -1.8304 6.4937 20 6 7.6599 -2.2133 7.4009 21 6 6.5057 -2.4257 6.4361 22 8 5.5225 -3.0989 6.6325 23 6 5.7433 -0.5746 4.9558 24 6 4.3843 -1.2574 4.7694 25 6 4.1126 -0.4661 -1.3288 26 6 4.1131 -1.9954 -1.2851 27 1 -0.4851 0.8400 -0.0004 28 1 5.2997 -1.5145 1.0204 29 1 4.3125 -0.1363 1.5629 30 1 5.3469 -3.9285 4.6427 31 1 5.5672 -3.8684 2.8749 32 1 7.1450 -2.0006 3.0890 33 1 7.6759 -3.3218 4.1577 34 1 8.7678 -0.9647 4.4880 35 1 8.0456 0.0651 5.7653 36 1 9.3068 -2.7186 6.0514 37 1 9.5957 -1.2550 7.0502 38 1 7.8745 -3.1326 7.9458 39 1 7.4342 -1.4039 8.0951 40 1 5.9862 0.0016 4.0629 41 1 5.7006 0.0910 5.8179 42 1 3.6353 -0.5132 4.4987 43 1 4.0908 -1.7512 5.6958 44 1 5.0653 0.0421 -1.1792 45 1 3.4258 0.0177 -2.0235 46 1 3.4267 -2.5182 -1.9511 47 1 5.0662 -2.4935 -1.1070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000660003818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:10 Heat of formation + Delta-G solvation = -84.173961 kcal Electronic energy + Delta-G solvation = -29960.247539 eV Core-core repulsion = 26042.836338 eV Total energy + Delta-G solvation = -3917.411201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03052 -37.42649 -37.10457 -36.23022 -36.09625 -34.93660 -32.17435 -31.65045 -31.20649 -28.49528 -27.57671 -25.62192 -25.28671 -23.54825 -21.84825 -21.70129 -21.20929 -19.48323 -18.79339 -18.10571 -17.22704 -16.55902 -16.30368 -15.78603 -15.67837 -15.30416 -14.93400 -14.77037 -14.33164 -14.10195 -13.92860 -13.81596 -13.73370 -13.52014 -12.97173 -12.73715 -12.61315 -12.57064 -12.52298 -12.45598 -12.15089 -11.51948 -11.42838 -11.33660 -11.28450 -11.23083 -11.08289 -10.99937 -10.81081 -10.60151 -10.54543 -10.49897 -10.35372 -10.02016 -9.73875 -9.46820 -9.12451 -8.73248 -8.62522 -8.39632 -6.18294 -4.29424 1.05981 1.73672 3.22587 3.30787 3.33495 3.42321 3.78637 4.11573 4.32686 4.34872 4.43214 4.63664 4.69390 4.72453 4.74531 4.84113 4.90644 5.05316 5.09656 5.13014 5.17928 5.29173 5.30727 5.37946 5.43762 5.49659 5.53737 5.60338 5.66401 5.70252 5.74182 5.77323 5.78066 5.91222 5.99162 6.04177 6.06769 6.15977 6.21571 6.37296 6.40880 6.61002 6.82811 6.91373 7.06446 7.34123 7.59725 8.34579 8.85436 9.43680 10.93350 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.003944 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.806618 B = 7097.855823 C = 7175.259820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.101 3.899 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.536 4.536 8 H 0.087 0.913 9 C 0.010 3.990 10 C -0.584 4.584 11 S 2.626 3.374 12 O -0.933 6.933 13 O -0.964 6.964 14 N -1.008 6.008 15 C 0.113 3.887 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.184 4.184 21 C 0.373 3.627 22 O -0.425 6.425 23 C -0.119 4.119 24 C 0.113 3.887 25 C -0.188 4.188 26 C -0.173 4.173 27 H 0.269 0.731 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.106 -0.088 12.438 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.106 4.106 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.573 4.573 8 H 0.105 0.895 9 C 0.007 3.993 10 C -0.715 4.715 11 S 2.722 3.278 12 O -0.923 6.923 13 O -0.954 6.954 14 N -0.843 5.843 15 C -0.013 4.013 16 C -0.156 4.156 17 C -0.117 4.117 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.221 4.221 21 C 0.247 3.753 22 O -0.296 6.296 23 C -0.158 4.158 24 C -0.013 4.013 25 C -0.227 4.227 26 C -0.210 4.210 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.537 -0.816 12.534 23.226 hybrid contribution 1.145 1.540 -0.233 1.933 sum 20.682 0.724 12.301 24.075 Atomic orbital electron populations 1.69881 1.06551 1.27525 1.46738 1.24924 0.94464 0.99002 0.92188 0.86898 0.80702 0.83512 0.78454 1.20165 1.21495 1.18242 1.20418 0.86330 0.95660 1.54859 0.89515 1.18754 0.94496 1.02197 0.83835 1.30380 1.10240 1.15566 1.15273 1.04727 0.74112 0.75441 0.73502 1.93563 1.43087 1.78202 1.77476 1.93480 1.86176 1.33974 1.81796 1.58193 1.49884 1.39325 1.36945 1.21550 0.85732 0.90108 1.03862 1.21975 0.98236 0.98547 0.96839 1.21575 0.97013 0.97086 0.96066 1.22435 0.94046 0.98999 0.99635 1.22433 0.96436 1.00238 0.96607 1.22930 0.96028 1.03970 0.99201 1.24827 0.85043 0.76737 0.88719 1.90425 1.28391 1.32185 1.78599 1.21914 0.94451 0.96471 1.02990 1.21463 0.96568 0.91161 0.92098 1.22941 1.01104 0.94857 1.03779 1.22950 1.00971 0.93055 1.04031 0.92137 0.87769 0.86189 0.90296 0.89013 0.90256 0.90654 0.90315 0.90498 0.90788 0.90442 0.89199 0.87957 0.90174 0.90550 0.88768 0.90350 0.90760 0.89026 0.88804 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.92 13.96 55.43 0.77 -26.15 16 2 C 0.10 2.93 5.46 -17.82 -0.10 2.84 16 3 Si 0.88 21.42 25.03 -169.99 -4.25 17.17 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -5.74 5.41 56.52 0.31 -5.43 16 7 C -0.54 -15.25 7.55 -34.44 -0.26 -15.51 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 C 0.01 0.23 1.11 -155.66 -0.17 0.05 16 10 C -0.58 -11.54 6.14 37.16 0.23 -11.32 16 11 S 2.63 56.36 4.56 -107.50 -0.49 55.87 16 12 O -0.93 -23.83 15.93 -57.54 -0.92 -24.75 16 13 O -0.96 -22.85 16.71 -57.54 -0.96 -23.81 16 14 N -1.01 -16.47 3.21 -113.20 -0.36 -16.84 16 15 C 0.11 1.56 5.89 -3.44 -0.02 1.53 16 16 C -0.12 -1.14 4.75 -26.49 -0.13 -1.27 16 17 C -0.12 -1.05 0.60 -155.13 -0.09 -1.14 16 18 C -0.11 -0.68 5.92 -25.11 -0.15 -0.83 16 19 C -0.12 -0.60 6.95 -24.65 -0.17 -0.77 16 20 C -0.18 -1.19 6.73 -26.27 -0.18 -1.37 16 21 C 0.37 3.75 6.08 -28.19 -0.17 3.58 16 22 O -0.43 -5.86 13.73 6.00 0.08 -5.78 16 23 C -0.12 -1.23 4.74 -26.74 -0.13 -1.36 16 24 C 0.11 1.63 5.85 -3.69 -0.02 1.61 16 25 C -0.19 -3.93 7.58 -26.73 -0.20 -4.13 16 26 C -0.17 -3.55 9.88 -26.73 -0.26 -3.81 16 27 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.10 1.64 7.95 -51.92 -0.41 1.22 16 29 H 0.12 2.26 6.47 -51.92 -0.34 1.92 16 30 H 0.08 1.14 6.17 -51.93 -0.32 0.81 16 31 H 0.09 1.26 7.08 -51.93 -0.37 0.90 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.43 7.82 -51.93 -0.41 0.02 16 35 H 0.08 0.41 7.82 -51.93 -0.41 0.00 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 42 H 0.09 1.43 7.09 -51.93 -0.37 1.07 16 43 H 0.08 1.17 6.22 -51.93 -0.32 0.84 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.09 2.00 7.09 -51.93 -0.37 1.63 16 46 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 47 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -36.24 367.55 -10.02 -46.26 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.61 Total: 4.36 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: -1.82 Total: -31.89 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.41 Total: -42.98 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -1.80 Total: -54.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.25 Total: 17.17 kcal Atomic # 16 Polarization: 56.36 SS G_CDS: -0.49 Total: 55.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.24 -10.02 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000660003818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.912 kcal (2) G-P(sol) polarization free energy of solvation -36.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds