Wall clock time and date at job start Sat Apr 11 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99733 * 2 1 4 4 H 1.48505 * 109.46747 * 273.42447 * 3 2 1 5 5 H 1.48495 * 109.47244 * 33.42048 * 3 2 1 6 6 H 1.48495 * 109.47365 * 153.42665 * 3 2 1 7 7 C 1.37875 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99871 * 354.27561 * 7 2 1 9 9 C 1.50698 * 119.99764 * 174.27892 * 7 2 1 10 10 C 1.52999 * 115.56584 * 91.24904 * 9 7 2 11 11 S 1.81396 * 109.46824 * 40.05355 * 10 9 7 12 12 O 1.42101 * 110.54763 * 284.34845 * 11 10 9 13 13 O 1.42102 * 110.54647 * 61.09885 * 11 10 9 14 14 N 1.65607 * 104.44946 * 172.72196 * 11 10 9 15 15 C 1.46927 * 120.61806 * 269.72583 * 14 11 10 16 16 C 1.53704 * 108.49821 * 125.94686 * 15 14 11 17 17 C 1.52753 * 109.31020 * 54.35441 * 16 15 14 18 18 C 1.54051 * 109.65477 * 178.51941 * 17 16 15 19 19 C 1.55034 * 103.68916 * 263.63599 * 18 17 16 20 20 C 1.54916 * 102.36376 * 323.11693 * 19 18 17 21 21 C 1.51184 * 109.99954 * 60.98232 * 17 16 15 22 22 O 1.20763 * 126.38803 * 299.51722 * 21 17 16 23 23 C 1.52746 * 110.36380 * 299.42010 * 17 16 15 24 24 C 1.46931 * 120.61555 * 89.99733 * 14 11 10 25 25 C 1.53002 * 117.49630 * 305.55706 * 9 7 2 26 26 C 1.52999 * 60.00227 * 252.51464 * 25 9 7 27 27 H 0.97006 * 120.00571 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47354 * 160.05475 * 10 9 7 29 29 H 1.08998 * 109.47054 * 280.05498 * 10 9 7 30 30 H 1.09000 * 109.59063 * 245.76738 * 15 14 11 31 31 H 1.08993 * 109.59677 * 6.20968 * 15 14 11 32 32 H 1.09002 * 109.63293 * 294.33945 * 16 15 14 33 33 H 1.09000 * 109.41400 * 174.23986 * 16 15 14 34 34 H 1.09003 * 110.58208 * 22.18551 * 18 17 16 35 35 H 1.08998 * 110.58284 * 145.08213 * 18 17 16 36 36 H 1.08995 * 110.83245 * 81.33553 * 19 18 17 37 37 H 1.09002 * 110.82955 * 204.90326 * 19 18 17 38 38 H 1.09001 * 110.44273 * 156.23101 * 20 19 18 39 39 H 1.08994 * 110.44108 * 278.63935 * 20 19 18 40 40 H 1.09007 * 109.48846 * 300.47137 * 23 17 16 41 41 H 1.09002 * 109.48420 * 180.41530 * 23 17 16 42 42 H 1.09000 * 109.59404 * 353.79050 * 24 14 11 43 43 H 1.09006 * 109.58431 * 114.07965 * 24 14 11 44 44 H 1.09007 * 117.49791 * 145.02382 * 25 9 7 45 45 H 1.09000 * 117.50073 * 0.02562 * 25 9 7 46 46 H 1.08994 * 117.49931 * 107.49080 * 26 25 9 47 47 H 1.09004 * 117.49781 * 252.49409 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4241 2.0882 -1.3976 5 1 1.4845 2.6307 0.7711 6 1 3.5810 1.4205 0.6263 7 6 2.0045 -1.1940 0.0005 8 1 1.4685 -2.1270 0.0942 9 6 3.5059 -1.1972 -0.1296 10 6 4.2829 -1.1593 1.1879 11 16 3.4625 -2.2258 2.4045 12 8 2.2917 -1.5981 2.9089 13 8 3.4339 -3.5715 1.9491 14 7 4.4995 -2.2536 3.6955 15 6 5.5479 -3.2785 3.7912 16 6 6.9012 -2.5753 3.9826 17 6 6.8171 -1.6366 5.1847 18 6 8.1808 -0.9552 5.4065 19 6 8.8558 -1.8304 6.4937 20 6 7.6599 -2.2133 7.4009 21 6 6.5057 -2.4257 6.4361 22 8 5.5225 -3.0989 6.6325 23 6 5.7433 -0.5746 4.9558 24 6 4.3843 -1.2574 4.7694 25 6 4.1126 -0.4661 -1.3288 26 6 4.1131 -1.9954 -1.2851 27 1 -0.4851 0.8400 -0.0004 28 1 5.2997 -1.5145 1.0204 29 1 4.3125 -0.1363 1.5629 30 1 5.3469 -3.9285 4.6427 31 1 5.5672 -3.8684 2.8749 32 1 7.1450 -2.0006 3.0890 33 1 7.6759 -3.3218 4.1577 34 1 8.7678 -0.9647 4.4880 35 1 8.0456 0.0651 5.7653 36 1 9.3068 -2.7186 6.0514 37 1 9.5957 -1.2550 7.0502 38 1 7.8745 -3.1326 7.9458 39 1 7.4342 -1.4039 8.0951 40 1 5.9862 0.0016 4.0629 41 1 5.7006 0.0910 5.8179 42 1 3.6353 -0.5132 4.4987 43 1 4.0908 -1.7512 5.6958 44 1 5.0653 0.0421 -1.1792 45 1 3.4258 0.0177 -2.0235 46 1 3.4267 -2.5182 -1.9511 47 1 5.0662 -2.4935 -1.1070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000660003818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:09 Heat of formation + Delta-G solvation = -111.125036 kcal Electronic energy + Delta-G solvation = -29961.416225 eV Core-core repulsion = 26042.836338 eV Total energy + Delta-G solvation = -3918.579887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77691 -38.84141 -38.35784 -38.02581 -36.92898 -36.67275 -34.33455 -32.46524 -32.14628 -30.12316 -28.13536 -27.65429 -26.17202 -24.48109 -23.34955 -22.79413 -21.68443 -21.20776 -20.12459 -19.21943 -18.80982 -18.30828 -17.24991 -17.08392 -16.93648 -16.62430 -16.41476 -15.78424 -15.51556 -15.47168 -15.24203 -14.86243 -14.66124 -14.49097 -14.41771 -14.36411 -14.20411 -13.63641 -13.48499 -13.21985 -13.17420 -12.96602 -12.85702 -12.71613 -12.63799 -12.47908 -12.27259 -12.20650 -12.04888 -11.93358 -11.88647 -11.85198 -11.68773 -11.31913 -11.24700 -10.93402 -10.72049 -10.37770 -10.20350 -9.68129 -8.37252 -6.53975 -0.57239 1.01359 1.30769 1.35012 1.46899 1.97387 2.32847 2.94414 3.03080 3.14459 3.20195 3.36043 3.50523 3.65045 3.75891 3.81471 3.93336 4.07686 4.21251 4.21897 4.30492 4.33669 4.35711 4.41232 4.44377 4.59389 4.60974 4.67866 4.68788 4.81395 4.81977 4.86012 4.89569 4.96144 4.99106 5.08115 5.13430 5.16908 5.21015 5.22346 5.32590 5.39394 5.47221 5.48789 5.60442 5.71069 6.12681 6.60041 6.64305 7.23197 8.79929 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.003944 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.806618 B = 7097.855823 C = 7175.259820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.034 3.966 3 Si 0.934 3.066 4 H -0.256 1.256 5 H -0.295 1.295 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.022 0.978 9 C -0.033 4.033 10 C -0.563 4.563 11 S 2.615 3.385 12 O -0.994 6.994 13 O -1.004 7.004 14 N -0.999 5.999 15 C 0.103 3.897 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.104 4.104 19 C -0.112 4.112 20 C -0.180 4.180 21 C 0.364 3.636 22 O -0.477 6.477 23 C -0.115 4.115 24 C 0.104 3.896 25 C -0.168 4.168 26 C -0.167 4.167 27 H 0.270 0.730 28 H 0.160 0.840 29 H 0.139 0.861 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.562 2.512 12.505 30.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.166 4.166 3 Si 0.756 3.244 4 H -0.181 1.181 5 H -0.222 1.222 6 H -0.133 1.133 7 C -0.576 4.576 8 H 0.040 0.960 9 C -0.035 4.035 10 C -0.697 4.697 11 S 2.715 3.285 12 O -0.984 6.984 13 O -0.994 6.994 14 N -0.838 5.838 15 C -0.021 4.021 16 C -0.151 4.151 17 C -0.120 4.120 18 C -0.142 4.142 19 C -0.150 4.150 20 C -0.218 4.218 21 C 0.241 3.759 22 O -0.351 6.351 23 C -0.153 4.153 24 C -0.021 4.021 25 C -0.206 4.206 26 C -0.204 4.204 27 H 0.078 0.922 28 H 0.178 0.822 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.140 0.860 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 26.022 1.746 12.612 28.970 hybrid contribution -0.953 0.540 -0.221 1.117 sum 25.069 2.287 12.392 28.058 Atomic orbital electron populations 1.70064 1.09084 1.28667 1.49555 1.26031 0.95257 1.03740 0.91593 0.85986 0.81188 0.77448 0.79809 1.18086 1.22192 1.13319 1.20531 0.89826 0.93189 1.54064 0.96016 1.18702 0.91707 1.06521 0.86561 1.30110 1.11901 1.15851 1.11789 1.04571 0.74355 0.74920 0.74641 1.93485 1.47178 1.78918 1.78864 1.93414 1.87021 1.36213 1.82792 1.57717 1.49689 1.40484 1.35865 1.21786 0.87430 0.89938 1.02986 1.22020 0.95603 0.99269 0.98178 1.21686 0.98580 0.96612 0.95138 1.22431 0.91673 0.99333 1.00720 1.22461 0.95828 1.00612 0.96052 1.22978 0.95178 1.04593 0.99035 1.25536 0.84872 0.75387 0.90075 1.90418 1.30628 1.34392 1.79693 1.21949 0.91735 0.96866 1.04787 1.21632 0.99423 0.90521 0.90525 1.23052 1.02190 0.94942 1.00415 1.23072 1.02006 0.93734 1.01568 0.92154 0.82236 0.84336 0.91952 0.89473 0.88101 0.88253 0.88684 0.89155 0.90298 0.88350 0.89131 0.86573 0.88397 0.88436 0.90418 0.91934 0.86005 0.90508 0.90736 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.46 13.96 21.45 0.30 -61.16 16 2 C 0.03 2.05 5.46 84.65 0.46 2.52 16 3 Si 0.93 42.99 25.03 68.60 1.72 44.71 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.21 -8.03 5.41 99.48 0.54 -7.49 16 7 C -0.54 -31.99 7.55 25.60 0.19 -31.80 16 8 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 9 C -0.03 -1.46 1.11 -52.93 -0.06 -1.51 16 10 C -0.56 -20.34 6.14 71.98 0.44 -19.90 16 11 S 2.62 114.99 4.56 -56.49 -0.26 114.73 16 12 O -0.99 -54.29 15.93 -127.65 -2.03 -56.32 16 13 O -1.00 -49.96 16.71 -127.65 -2.13 -52.09 16 14 N -1.00 -32.51 3.21 -512.05 -1.64 -34.15 16 15 C 0.10 2.75 5.89 86.54 0.51 3.26 16 16 C -0.11 -1.74 4.75 30.75 0.15 -1.59 16 17 C -0.12 -1.69 0.60 -52.59 -0.03 -1.72 16 18 C -0.10 -0.64 5.92 31.65 0.19 -0.45 16 19 C -0.11 -0.54 6.95 31.95 0.22 -0.32 16 20 C -0.18 -1.76 6.73 30.89 0.21 -1.55 16 21 C 0.36 6.67 6.08 29.65 0.18 6.85 16 22 O -0.48 -13.44 13.73 -1.46 -0.02 -13.46 16 23 C -0.11 -1.98 4.74 30.59 0.15 -1.83 16 24 C 0.10 3.00 5.85 86.38 0.51 3.51 16 25 C -0.17 -6.20 7.58 30.59 0.23 -5.97 16 26 C -0.17 -6.36 9.88 30.60 0.30 -6.06 16 27 H 0.27 16.37 8.31 -92.70 -0.77 15.60 16 28 H 0.16 3.98 7.95 -2.39 -0.02 3.96 16 29 H 0.14 4.51 6.47 -2.39 -0.02 4.49 16 30 H 0.06 1.86 6.17 -2.39 -0.01 1.84 16 31 H 0.09 2.35 7.08 -2.39 -0.02 2.33 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 0.36 7.82 -2.39 -0.02 0.34 16 35 H 0.09 0.38 7.82 -2.39 -0.02 0.36 16 36 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.10 1.28 8.13 -2.39 -0.02 1.26 16 42 H 0.08 2.45 7.09 -2.39 -0.02 2.43 16 43 H 0.06 1.97 6.22 -2.38 -0.01 1.96 16 44 H 0.12 3.42 8.14 -2.38 -0.02 3.40 16 45 H 0.08 3.09 7.09 -2.39 -0.02 3.07 16 46 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.12 3.50 8.09 -2.38 -0.02 3.48 16 Total: -1.00 -90.65 367.55 0.37 -90.29 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.79 Total: 24.03 kcal Atomic # 6 Polarization: -60.23 SS G_CDS: 3.64 Total: -56.58 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -1.34 Total: -95.31 kcal Atomic # 8 Polarization: -117.68 SS G_CDS: -4.19 Total: -121.87 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.72 Total: 44.71 kcal Atomic # 16 Polarization: 114.99 SS G_CDS: -0.26 Total: 114.73 kcal Total: -90.65 0.37 -90.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000660003818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.837 kcal (2) G-P(sol) polarization free energy of solvation -90.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds