Wall clock time and date at job start Sat Apr 11 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48495 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47102 * 300.00770 * 3 2 1 6 6 H 1.48503 * 109.46558 * 60.00627 * 3 2 1 7 7 C 1.38653 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00643 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99944 * 185.05827 * 9 7 2 11 11 C 1.38879 * 120.06852 * 354.46938 * 10 9 7 12 12 C 1.38100 * 119.93098 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06903 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93332 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46767 * 90.00162 * 14 13 12 16 16 O 1.21274 * 120.00399 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00059 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00416 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47248 * 179.97438 * 18 17 15 20 20 N 1.46502 * 109.47248 * 180.02562 * 19 18 17 21 21 C 1.39003 * 120.00551 * 180.02562 * 20 19 18 22 22 C 1.39141 * 119.70206 * 0.02562 * 21 20 19 23 23 C 1.38299 * 119.09586 * 179.97438 * 22 21 20 24 24 C 1.38881 * 118.50224 * 359.97438 * 23 22 21 25 25 C 1.38020 * 119.33397 * 0.28185 * 24 23 22 26 26 N 1.31975 * 120.85487 * 359.44142 * 25 24 23 27 27 C 1.38300 * 120.13866 * 0.25391 * 13 12 11 28 28 C 1.38104 * 120.06851 * 359.45071 * 27 13 12 29 29 H 0.97002 * 120.00278 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03577 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.97081 * 179.97438 * 12 11 10 32 32 H 1.09000 * 109.47449 * 330.00779 * 14 13 12 33 33 H 1.08992 * 109.47492 * 210.00243 * 14 13 12 34 34 H 0.96999 * 119.99866 * 0.02562 * 17 15 14 35 35 H 1.09003 * 109.46945 * 60.00123 * 18 17 15 36 36 H 1.08992 * 109.47220 * 300.00352 * 18 17 15 37 37 H 1.09000 * 109.47305 * 60.00896 * 19 18 17 38 38 H 1.08992 * 109.47512 * 300.00436 * 19 18 17 39 39 H 0.96999 * 119.99718 * 0.02562 * 20 19 18 40 40 H 1.07997 * 120.45190 * 0.02572 * 22 21 20 41 41 H 1.07995 * 120.74725 * 180.02562 * 23 22 21 42 42 H 1.08009 * 120.33280 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.57259 * 179.69853 * 25 24 23 44 44 H 1.08005 * 119.96724 * 179.70254 * 27 13 12 45 45 H 1.07995 * 120.03521 * 180.27675 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8908 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0922 12 6 4.2024 -4.5971 0.1998 13 6 3.5687 -5.8205 0.3202 14 6 4.3849 -7.0819 0.4369 15 6 4.6642 -7.3669 1.8901 16 8 4.2416 -6.6196 2.7467 17 7 5.3835 -8.4523 2.2379 18 6 5.6555 -8.7290 3.6506 19 6 6.4841 -10.0097 3.7690 20 7 6.7556 -10.2869 5.1817 21 6 7.4974 -11.4063 5.5404 22 6 7.9797 -12.2593 4.5526 23 6 8.7168 -13.3692 4.9236 24 6 8.9484 -13.5894 6.2751 25 6 8.4354 -12.7048 7.2020 26 7 7.7397 -11.6508 6.8189 27 6 2.1874 -5.8893 0.3281 28 6 1.4365 -4.7346 0.2269 29 1 -0.4851 0.8400 0.0004 30 1 3.9526 -2.4846 -0.0031 31 1 5.2812 -4.5473 0.1891 32 1 5.3273 -6.9556 -0.0961 33 1 3.8311 -7.9145 0.0033 34 1 5.7218 -9.0498 1.5528 35 1 4.7134 -8.8557 4.1839 36 1 6.2092 -7.8962 4.0839 37 1 7.4263 -9.8836 3.2357 38 1 5.9300 -10.8424 3.3358 39 1 6.4176 -9.6891 5.8668 40 1 7.7818 -12.0571 3.5104 41 1 9.1043 -14.0487 4.1790 42 1 9.5207 -14.4467 6.5978 43 1 8.6090 -12.8751 8.2543 44 1 1.6954 -6.8466 0.4174 45 1 0.3580 -4.7885 0.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732266379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:19 Heat of formation + Delta-G solvation = 3.939926 kcal Electronic energy + Delta-G solvation = -26682.877878 eV Core-core repulsion = 22666.136382 eV Total energy + Delta-G solvation = -4016.741496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56626 -39.86864 -38.80770 -37.07510 -36.40723 -34.59229 -32.80372 -32.46849 -31.59549 -30.63679 -30.12402 -28.40022 -26.47849 -25.12659 -24.32468 -23.16505 -22.29138 -21.94870 -21.16635 -20.09381 -18.25474 -17.95407 -17.37788 -16.95238 -16.76572 -16.24228 -16.15991 -15.90134 -15.17471 -14.84950 -14.58005 -14.53984 -14.50395 -14.18617 -14.03052 -13.70481 -13.51521 -13.41541 -13.32817 -12.74353 -12.66270 -12.38621 -12.31326 -12.11897 -11.81378 -11.48861 -11.25519 -10.84502 -10.74588 -10.73574 -10.58030 -10.39918 -10.14558 -9.84067 -9.81152 -9.30645 -9.28690 -8.80004 -8.18230 -8.12503 -7.14065 -6.42133 -4.00644 0.88924 1.06142 2.20677 2.27829 2.48726 2.70709 3.13810 3.15974 3.21492 3.33979 3.54500 3.99359 4.14019 4.26563 4.46167 4.53591 4.56293 4.71805 4.82644 4.84602 4.92734 4.96039 5.10936 5.24585 5.27514 5.33498 5.33826 5.40067 5.51284 5.60437 5.65735 5.74747 5.86987 5.88760 6.10622 6.18938 6.24381 6.44431 6.54506 6.72760 6.93918 7.07979 7.09204 7.26021 7.33764 7.39315 7.47912 7.77498 7.86594 8.03265 8.23892 9.03755 9.74290 10.76084 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.001443 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.378121 B =19394.534783 C =19849.426939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.157 3.843 11 C -0.233 4.233 12 C -0.056 4.056 13 C -0.173 4.173 14 C -0.078 4.078 15 C 0.510 3.490 16 O -0.516 6.516 17 N -0.739 5.739 18 C 0.110 3.890 19 C 0.120 3.880 20 N -0.723 5.723 21 C 0.405 3.595 22 C -0.240 4.240 23 C -0.034 4.034 24 C -0.238 4.238 25 C 0.149 3.851 26 N -0.545 5.545 27 C -0.059 4.059 28 C -0.191 4.191 29 H 0.269 0.731 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.408 0.592 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.155 0.845 44 H 0.108 0.892 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.750 -26.797 5.934 32.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.174 4.174 14 C -0.118 4.118 15 C 0.297 3.703 16 O -0.389 6.389 17 N -0.395 5.395 18 C -0.015 4.015 19 C -0.006 4.006 20 N -0.356 5.356 21 C 0.169 3.831 22 C -0.265 4.265 23 C -0.060 4.060 24 C -0.260 4.260 25 C -0.008 4.008 26 N -0.263 5.263 27 C -0.078 4.078 28 C -0.211 4.211 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.245 0.755 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.172 0.828 44 H 0.126 0.874 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.629 -25.387 6.952 31.135 hybrid contribution 0.934 0.124 -0.599 1.117 sum 17.564 -25.263 6.353 31.418 Atomic orbital electron populations 1.70047 1.05951 1.27506 1.46290 1.25283 0.95835 0.98808 0.96596 0.85650 0.79149 0.80420 0.78221 1.19114 1.20167 1.20145 1.21382 0.91833 0.80833 1.52656 0.89022 1.83977 1.34390 1.11476 1.78354 1.19387 0.90297 0.88035 0.91973 1.21109 0.93814 0.98781 1.11480 1.20505 0.98020 0.91776 0.97142 1.18625 0.93217 0.92758 1.12790 1.20393 1.01297 0.98181 0.91885 1.21118 0.77130 0.79700 0.92366 1.90767 1.49412 1.46676 1.52017 1.45875 1.57556 1.28684 1.07353 1.21281 1.00030 0.96205 0.83988 1.21458 0.99679 0.97281 0.82161 1.44227 1.57916 1.26220 1.07273 1.18309 0.88807 0.86855 0.89132 1.21411 1.06839 0.98536 0.99759 1.21338 0.93318 0.95030 0.96274 1.21839 1.06996 1.03283 0.93930 1.22418 0.90439 0.88024 0.99968 1.67152 1.19985 1.22470 1.16686 1.20402 0.92757 0.96713 0.97913 1.20159 0.99504 0.90287 1.11125 0.92107 0.85577 0.87834 0.88901 0.88856 0.76648 0.90773 0.90784 0.91167 0.91160 0.75549 0.85159 0.85036 0.85155 0.82780 0.87378 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.23 9.76 0.04 0.00 -5.23 16 10 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 11 C -0.23 -5.23 9.17 -39.39 -0.36 -5.59 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 13 C -0.17 -2.96 4.38 -104.58 -0.46 -3.42 16 14 C -0.08 -0.90 5.83 -29.03 -0.17 -1.07 16 15 C 0.51 6.53 7.82 -10.98 -0.09 6.45 16 16 O -0.52 -9.42 16.03 5.56 0.09 -9.33 16 17 N -0.74 -5.99 5.56 -60.30 -0.33 -6.33 16 18 C 0.11 0.85 5.79 -4.04 -0.02 0.83 16 19 C 0.12 0.65 5.01 -4.04 -0.02 0.63 16 20 N -0.72 -5.34 5.73 -60.43 -0.35 -5.69 16 21 C 0.40 3.54 7.65 -155.02 -1.19 2.36 16 22 C -0.24 -1.68 9.33 -39.22 -0.37 -2.05 16 23 C -0.03 -0.20 10.17 -39.32 -0.40 -0.60 16 24 C -0.24 -1.44 10.10 -39.42 -0.40 -1.84 16 25 C 0.15 1.10 11.17 -17.57 -0.20 0.91 16 26 N -0.55 -5.31 10.39 -12.44 -0.13 -5.44 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 28 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.40 1.80 8.47 -40.82 -0.35 1.46 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.32 7.93 -51.93 -0.41 -0.09 16 38 H 0.07 0.32 7.93 -51.93 -0.41 -0.09 16 39 H 0.41 3.06 8.60 -40.82 -0.35 2.71 16 40 H 0.13 0.66 6.71 -52.49 -0.35 0.30 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 43 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -36.79 389.01 -9.81 -46.60 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.80 Total: 5.75 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -4.89 Total: -17.13 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.05 Total: -42.39 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.09 Total: -14.56 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.79 -9.81 -46.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732266379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.540 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds