Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48495 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47102 * 300.00770 * 3 2 1 6 6 H 1.48503 * 109.46558 * 60.00627 * 3 2 1 7 7 C 1.38653 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00643 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99944 * 185.05827 * 9 7 2 11 11 C 1.38879 * 120.06852 * 354.46938 * 10 9 7 12 12 C 1.38100 * 119.93098 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06903 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93332 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46767 * 90.00162 * 14 13 12 16 16 O 1.21274 * 120.00399 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00059 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00416 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47248 * 179.97438 * 18 17 15 20 20 N 1.46502 * 109.47248 * 180.02562 * 19 18 17 21 21 C 1.39003 * 120.00551 * 180.02562 * 20 19 18 22 22 C 1.39141 * 119.70206 * 0.02562 * 21 20 19 23 23 C 1.38299 * 119.09586 * 179.97438 * 22 21 20 24 24 C 1.38881 * 118.50224 * 359.97438 * 23 22 21 25 25 C 1.38020 * 119.33397 * 0.28185 * 24 23 22 26 26 N 1.31975 * 120.85487 * 359.44142 * 25 24 23 27 27 C 1.38300 * 120.13866 * 0.25391 * 13 12 11 28 28 C 1.38104 * 120.06851 * 359.45071 * 27 13 12 29 29 H 0.97002 * 120.00278 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03577 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.97081 * 179.97438 * 12 11 10 32 32 H 1.09000 * 109.47449 * 330.00779 * 14 13 12 33 33 H 1.08992 * 109.47492 * 210.00243 * 14 13 12 34 34 H 0.96999 * 119.99866 * 0.02562 * 17 15 14 35 35 H 1.09003 * 109.46945 * 60.00123 * 18 17 15 36 36 H 1.08992 * 109.47220 * 300.00352 * 18 17 15 37 37 H 1.09000 * 109.47305 * 60.00896 * 19 18 17 38 38 H 1.08992 * 109.47512 * 300.00436 * 19 18 17 39 39 H 0.96999 * 119.99718 * 0.02562 * 20 19 18 40 40 H 1.07997 * 120.45190 * 0.02572 * 22 21 20 41 41 H 1.07995 * 120.74725 * 180.02562 * 23 22 21 42 42 H 1.08009 * 120.33280 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.57259 * 179.69853 * 25 24 23 44 44 H 1.08005 * 119.96724 * 179.70254 * 27 13 12 45 45 H 1.07995 * 120.03521 * 180.27675 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8908 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0922 12 6 4.2024 -4.5971 0.1998 13 6 3.5687 -5.8205 0.3202 14 6 4.3849 -7.0819 0.4369 15 6 4.6642 -7.3669 1.8901 16 8 4.2416 -6.6196 2.7467 17 7 5.3835 -8.4523 2.2379 18 6 5.6555 -8.7290 3.6506 19 6 6.4841 -10.0097 3.7690 20 7 6.7556 -10.2869 5.1817 21 6 7.4974 -11.4063 5.5404 22 6 7.9797 -12.2593 4.5526 23 6 8.7168 -13.3692 4.9236 24 6 8.9484 -13.5894 6.2751 25 6 8.4354 -12.7048 7.2020 26 7 7.7397 -11.6508 6.8189 27 6 2.1874 -5.8893 0.3281 28 6 1.4365 -4.7346 0.2269 29 1 -0.4851 0.8400 0.0004 30 1 3.9526 -2.4846 -0.0031 31 1 5.2812 -4.5473 0.1891 32 1 5.3273 -6.9556 -0.0961 33 1 3.8311 -7.9145 0.0033 34 1 5.7218 -9.0498 1.5528 35 1 4.7134 -8.8557 4.1839 36 1 6.2092 -7.8962 4.0839 37 1 7.4263 -9.8836 3.2357 38 1 5.9300 -10.8424 3.3358 39 1 6.4176 -9.6891 5.8668 40 1 7.7818 -12.0571 3.5104 41 1 9.1043 -14.0487 4.1790 42 1 9.5207 -14.4467 6.5978 43 1 8.6090 -12.8751 8.2543 44 1 1.6954 -6.8466 0.4174 45 1 0.3580 -4.7885 0.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732266379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = -22.632225 kcal Electronic energy + Delta-G solvation = -26684.030133 eV Core-core repulsion = 22666.136382 eV Total energy + Delta-G solvation = -4017.893751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15219 -40.98199 -40.37281 -38.29834 -37.49849 -35.38549 -34.39863 -33.30329 -32.92494 -31.77257 -31.33288 -29.19292 -27.89077 -26.86606 -24.90407 -23.76698 -23.62811 -22.81755 -22.48850 -21.25899 -19.84289 -18.89677 -18.72089 -18.10352 -17.44404 -17.01083 -16.93533 -16.47284 -16.42870 -16.28178 -15.81764 -15.67875 -15.51094 -15.25056 -15.09994 -14.98794 -14.76640 -14.50763 -14.39707 -14.10841 -13.82522 -13.61193 -13.17358 -12.98613 -12.88664 -12.69342 -12.57143 -12.47612 -12.26534 -12.22946 -12.10250 -11.19653 -11.17285 -10.97093 -10.76099 -10.64680 -10.35310 -10.11512 -9.75382 -8.89427 -8.67195 -8.47770 -6.15939 0.41107 0.58564 0.62422 0.67673 1.33428 1.42024 1.52201 1.73820 1.81419 2.17080 2.59543 2.87733 3.04506 3.19005 3.53280 3.61933 3.81239 3.88275 4.02286 4.06729 4.07668 4.18971 4.25890 4.29562 4.37191 4.43955 4.52071 4.53117 4.60878 4.75057 4.81417 4.84467 4.86833 4.91629 5.10400 5.15150 5.18280 5.31617 5.41080 5.45865 5.57611 5.70072 5.72508 5.78890 6.02967 6.07360 6.24573 6.53322 6.62820 6.96979 7.26616 7.36727 7.78567 8.75975 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.001443 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.378121 B =19394.534783 C =19849.426939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.111 3.889 11 C -0.245 4.245 12 C -0.060 4.060 13 C -0.147 4.147 14 C -0.076 4.076 15 C 0.511 3.489 16 O -0.581 6.581 17 N -0.713 5.713 18 C 0.114 3.886 19 C 0.131 3.869 20 N -0.729 5.729 21 C 0.382 3.618 22 C -0.246 4.246 23 C -0.038 4.038 24 C -0.238 4.238 25 C 0.129 3.871 26 N -0.582 5.582 27 C -0.058 4.058 28 C -0.208 4.208 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.423 0.577 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.403 0.597 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.170 0.830 44 H 0.148 0.852 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.210 -30.347 4.988 37.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.265 4.265 12 C -0.078 4.078 13 C -0.148 4.148 14 C -0.115 4.115 15 C 0.299 3.701 16 O -0.460 6.460 17 N -0.369 5.369 18 C -0.011 4.011 19 C 0.006 3.994 20 N -0.363 5.363 21 C 0.147 3.853 22 C -0.271 4.271 23 C -0.064 4.064 24 C -0.260 4.260 25 C -0.028 4.028 26 N -0.300 5.300 27 C -0.076 4.076 28 C -0.227 4.227 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.238 0.762 40 H 0.169 0.831 41 H 0.177 0.823 42 H 0.172 0.828 43 H 0.187 0.813 44 H 0.166 0.834 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 20.159 -29.059 5.974 35.868 hybrid contribution 0.026 0.775 -0.242 0.812 sum 20.185 -28.284 5.732 35.217 Atomic orbital electron populations 1.70191 1.08028 1.28701 1.49063 1.26600 0.96879 1.02724 0.95871 0.84521 0.78181 0.74787 0.78636 1.17560 1.18992 1.19441 1.21863 0.92479 0.81523 1.53153 0.88273 1.83935 1.36010 1.12626 1.81636 1.19957 0.91696 0.87978 0.94317 1.21236 0.93126 1.00068 1.12029 1.20953 0.99733 0.91141 0.96001 1.19305 0.93361 0.94717 1.07403 1.20534 1.02798 0.96330 0.91822 1.21228 0.76818 0.79907 0.92148 1.90776 1.52401 1.49155 1.53665 1.45566 1.55616 1.27468 1.08201 1.21208 0.99552 0.96975 0.83408 1.21430 1.00135 0.96294 0.81519 1.44324 1.58018 1.26060 1.07871 1.18615 0.89650 0.87641 0.89440 1.21691 1.06607 0.98416 1.00374 1.21758 0.92646 0.95073 0.96897 1.22159 1.06406 1.03455 0.93991 1.22816 0.90614 0.88041 1.01297 1.67117 1.21319 1.23837 1.17760 1.20906 0.93597 0.96914 0.96165 1.20457 0.99896 0.90760 1.11581 0.91849 0.86617 0.84289 0.84979 0.84724 0.73927 0.92261 0.92333 0.89522 0.89479 0.76190 0.83113 0.82258 0.82832 0.81300 0.83410 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.21 13.67 21.61 0.30 -57.91 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 44.33 29.55 68.60 2.03 46.35 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.41 -25.15 9.49 67.92 0.64 -24.50 16 8 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 9 O -0.24 -14.84 9.76 -22.77 -0.22 -15.06 16 10 C 0.11 5.83 6.65 22.58 0.15 5.98 16 11 C -0.25 -11.31 9.17 22.39 0.21 -11.10 16 12 C -0.06 -2.15 9.69 22.25 0.22 -1.94 16 13 C -0.15 -4.53 4.38 -19.83 -0.09 -4.62 16 14 C -0.08 -1.32 5.83 29.10 0.17 -1.15 16 15 C 0.51 11.09 7.82 87.66 0.69 11.77 16 16 O -0.58 -20.25 16.03 -3.01 -0.05 -20.30 16 17 N -0.71 -8.53 5.56 -463.08 -2.57 -11.10 16 18 C 0.11 1.51 5.79 86.38 0.50 2.01 16 19 C 0.13 1.03 5.01 86.38 0.43 1.46 16 20 N -0.73 -9.85 5.73 -345.09 -1.98 -11.83 16 21 C 0.38 6.18 7.65 133.07 1.02 7.20 16 22 C -0.25 -2.78 9.33 22.50 0.21 -2.57 16 23 C -0.04 -0.34 10.17 22.44 0.23 -0.12 16 24 C -0.24 -2.36 10.10 22.37 0.23 -2.13 16 25 C 0.13 1.79 11.17 84.62 0.95 2.73 16 26 N -0.58 -11.10 10.39 -193.26 -2.01 -13.11 16 27 C -0.06 -2.01 9.69 22.25 0.22 -1.79 16 28 C -0.21 -9.37 9.99 22.39 0.22 -9.14 16 29 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.12 5.43 5.64 -2.91 -0.02 5.42 16 31 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.13 1.43 8.08 -2.39 -0.02 1.42 16 33 H 0.13 1.40 8.08 -2.39 -0.02 1.38 16 34 H 0.42 1.35 8.47 -92.71 -0.79 0.56 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 0.43 7.93 -2.39 -0.02 0.41 16 38 H 0.09 0.43 7.93 -2.39 -0.02 0.41 16 39 H 0.40 6.00 8.60 -92.71 -0.80 5.21 16 40 H 0.15 0.92 6.71 -2.91 -0.02 0.90 16 41 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 42 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 43 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 45 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -89.94 389.01 1.40 -88.53 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.54 Total: 23.25 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 6.45 Total: -28.83 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -6.26 Total: -93.95 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.27 Total: -35.36 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -89.94 1.40 -88.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732266379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.899 kcal (2) G-P(sol) polarization free energy of solvation -89.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds