Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86810 * 119.99695 * 2 1 4 4 H 1.48495 * 109.47018 * 274.98490 * 3 2 1 5 5 H 1.48494 * 109.46697 * 34.98289 * 3 2 1 6 6 H 1.48493 * 109.47000 * 154.98424 * 3 2 1 7 7 C 1.38982 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00318 * 185.91692 * 7 2 1 9 9 N 1.37323 * 120.00166 * 5.91193 * 7 2 1 10 10 C 1.36489 * 126.07265 * 174.42222 * 9 7 2 11 11 C 1.35680 * 107.50931 * 180.15878 * 10 9 7 12 12 N 1.40599 * 126.07982 * 179.84090 * 11 10 9 13 13 C 1.34780 * 119.99599 * 179.71840 * 12 11 10 14 14 O 1.21298 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99662 * 179.97438 * 13 12 11 16 16 C 1.53787 * 113.61475 * 179.97438 * 15 13 12 17 17 C 1.53776 * 87.08099 * 219.93389 * 16 15 13 18 18 O 1.42903 * 113.61341 * 139.97525 * 17 16 15 19 19 C 1.42909 * 113.99621 * 149.99864 * 18 17 16 20 20 C 1.50700 * 109.46667 * 180.02562 * 19 18 17 21 21 C 1.38237 * 120.00070 * 269.72522 * 20 19 18 22 22 C 1.38240 * 119.99933 * 179.76842 * 21 20 19 23 23 C 1.38240 * 119.99658 * 0.50992 * 22 21 20 24 24 C 1.38230 * 120.00095 * 359.74698 * 23 22 21 25 25 C 1.38240 * 120.00510 * 359.97438 * 24 23 22 26 26 C 1.53782 * 113.69078 * 82.46586 * 15 13 12 27 27 C 1.40644 * 107.83532 * 359.58042 * 11 10 9 28 28 N 1.30912 * 108.38819 * 0.25997 * 27 11 10 29 29 H 0.97000 * 120.00416 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24861 * 0.02562 * 10 9 7 31 31 H 0.96992 * 120.00329 * 359.71401 * 12 11 10 32 32 H 1.09006 * 112.85202 * 311.19425 * 15 13 12 33 33 H 1.08999 * 113.61446 * 105.38290 * 16 15 13 34 34 H 1.09003 * 113.61036 * 334.48115 * 16 15 13 35 35 H 1.09000 * 113.61733 * 270.79639 * 17 16 15 36 36 H 1.08999 * 109.46784 * 60.00662 * 19 18 17 37 37 H 1.08995 * 109.47210 * 300.00470 * 19 18 17 38 38 H 1.07997 * 119.99982 * 0.02562 * 21 20 19 39 39 H 1.07994 * 120.00051 * 180.23121 * 22 21 20 40 40 H 1.08001 * 119.99900 * 179.72237 * 23 22 21 41 41 H 1.08006 * 119.99902 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.99963 * 179.97438 * 25 24 23 43 43 H 1.08993 * 113.61490 * 25.43573 * 26 15 13 44 44 H 1.09004 * 113.61146 * 254.53878 * 26 15 13 45 45 H 1.07998 * 125.80597 * 180.24023 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6179 0.0000 4 1 2.3890 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5920 7 6 2.0079 -1.2036 -0.0005 8 1 3.0836 -1.2061 0.0959 9 7 1.3269 -2.3897 -0.1236 10 6 1.8863 -3.6286 -0.2459 11 6 0.8734 -4.5259 -0.3450 12 7 1.0112 -5.9176 -0.4892 13 6 -0.0844 -6.6984 -0.5708 14 8 -1.1892 -6.2004 -0.5194 15 6 0.0634 -8.1901 -0.7260 16 6 -1.2786 -8.9373 -0.8036 17 6 -0.6349 -10.0232 0.0745 18 8 -1.5139 -10.5491 1.0710 19 6 -1.2520 -11.9107 1.4170 20 6 -2.2330 -12.3590 2.4695 21 6 -1.9270 -12.2072 3.8090 22 6 -2.8289 -12.6141 4.7744 23 6 -4.0323 -13.1825 4.4003 24 6 -4.3359 -13.3391 3.0609 25 6 -3.4365 -12.9270 2.0954 26 6 0.3072 -8.9282 0.6009 27 6 -0.3390 -3.8167 -0.2717 28 7 -0.0653 -2.5434 -0.1396 29 1 -0.4851 0.8400 0.0004 30 1 2.9425 -3.8536 -0.2631 31 1 1.8947 -6.3159 -0.5300 32 1 0.7635 -8.4664 -1.5145 33 1 -1.5302 -9.2797 -1.8073 34 1 -2.0997 -8.4116 -0.3162 35 1 -0.1272 -10.8015 -0.4954 36 1 -0.2371 -11.9982 1.8048 37 1 -1.3579 -12.5374 0.5315 38 1 -0.9851 -11.7670 4.1012 39 1 -2.5915 -12.4921 5.8208 40 1 -4.7350 -13.5045 5.1546 41 1 -5.2759 -13.7835 2.7687 42 1 -3.6737 -13.0497 1.0490 43 1 -0.0806 -8.4001 1.4719 44 1 1.3362 -9.2634 0.7313 45 1 -1.3276 -4.2491 -0.3170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746842724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = 51.844948 kcal Electronic energy + Delta-G solvation = -27435.583469 eV Core-core repulsion = 23420.919290 eV Total energy + Delta-G solvation = -4014.664179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36610 -39.65926 -39.26469 -37.95309 -35.90524 -34.13339 -33.09217 -32.03193 -31.18541 -30.21502 -28.09504 -26.66420 -25.79311 -25.60510 -24.41105 -22.86964 -21.64062 -21.27600 -20.67501 -19.41093 -19.28624 -17.79464 -17.27876 -17.08010 -16.07946 -15.91317 -15.73489 -15.48449 -15.36671 -15.07422 -14.65084 -14.30427 -13.98179 -13.87276 -13.67158 -13.38265 -13.10021 -12.96244 -12.87320 -12.50617 -12.37524 -12.13904 -11.69006 -11.57409 -11.37998 -11.34126 -11.25560 -11.07749 -10.94765 -10.89885 -10.75981 -10.50941 -10.09030 -9.63164 -9.19884 -9.13810 -9.13068 -9.04367 -8.76015 -8.01972 -6.65461 -6.53362 -4.19836 0.97677 1.12317 2.86035 3.05413 3.06656 3.11894 3.25124 3.63093 3.70488 3.84695 3.99491 4.35159 4.40162 4.46843 4.53211 4.61813 4.70022 4.70674 4.75280 4.82328 4.85768 4.97068 5.03161 5.04221 5.18994 5.26355 5.36038 5.41473 5.58410 5.67373 5.72049 5.74893 5.90037 5.99570 6.15076 6.21755 6.22114 6.27986 6.30253 6.51448 6.69253 6.95151 7.00719 7.07890 7.18127 7.28948 7.89567 8.24157 8.34070 8.67842 8.93456 9.41780 9.70939 10.43019 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.001686 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.792970 B =16599.364387 C =17119.239075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.325 4.325 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.084 4.084 11 C -0.060 4.060 12 N -0.624 5.624 13 C 0.510 3.490 14 O -0.533 6.533 15 C -0.132 4.132 16 C -0.110 4.110 17 C 0.061 3.939 18 O -0.362 6.362 19 C 0.100 3.900 20 C -0.090 4.090 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.099 4.099 26 C -0.137 4.137 27 C -0.033 4.033 28 N -0.261 5.261 29 H 0.274 0.726 30 H 0.145 0.855 31 H 0.396 0.604 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -26.376 3.300 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.235 4.235 11 C -0.165 4.165 12 N -0.266 5.266 13 C 0.296 3.704 14 O -0.410 6.410 15 C -0.154 4.154 16 C -0.148 4.148 17 C 0.003 3.997 18 O -0.281 6.281 19 C 0.024 3.976 20 C -0.090 4.090 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.117 4.117 26 C -0.176 4.176 27 C -0.209 4.209 28 N -0.092 5.092 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.229 0.771 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.596 -24.568 3.546 24.874 hybrid contribution 1.579 -0.452 -0.227 1.658 sum -0.017 -25.021 3.320 25.240 Atomic orbital electron populations 1.70224 1.06146 1.27927 1.35371 1.25638 0.95675 1.00243 0.95511 0.85822 0.79439 0.80116 0.78825 1.19663 1.20119 1.18810 1.19862 0.92115 0.80740 1.52968 0.86661 1.44540 1.03991 1.03677 1.38968 1.21261 0.96789 0.85846 1.19587 1.17311 0.94256 0.81936 1.23003 1.42535 1.08257 1.05120 1.70676 1.20027 0.84474 0.87776 0.78168 1.90592 1.25709 1.74627 1.50107 1.22422 1.00704 0.92325 0.99966 1.23097 0.97152 0.94741 0.99840 1.23712 0.91857 0.94107 0.89980 1.88103 1.56238 1.25558 1.58243 1.21360 0.96574 0.83960 0.95708 1.19637 0.95768 0.99629 0.93958 1.21100 0.99816 0.98439 0.92285 1.21171 0.94322 0.99156 0.99522 1.21209 0.96952 0.99036 0.96226 1.21158 0.99485 1.00510 0.93095 1.21081 0.93115 0.97812 0.99705 1.23428 1.00100 0.96829 0.97199 1.24109 0.98030 0.90923 1.07845 1.78243 0.90311 1.15148 1.25538 0.91499 0.83772 0.77125 0.87096 0.90616 0.87491 0.89281 0.92426 0.92466 0.85872 0.85893 0.86048 0.85933 0.85922 0.88531 0.90619 0.80765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.88 11.84 55.49 0.66 -21.22 16 2 C 0.05 1.22 5.50 -17.51 -0.10 1.12 16 3 Si 0.93 19.17 29.56 -169.99 -5.02 14.14 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.32 -8.72 10.24 -14.82 -0.15 -8.87 16 8 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 9 N -0.14 -4.02 3.74 -11.41 -0.04 -4.06 16 10 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 11 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 12 N -0.62 -11.17 5.47 -10.00 -0.05 -11.22 16 13 C 0.51 8.93 7.33 -10.98 -0.08 8.85 16 14 O -0.53 -11.69 13.05 5.54 0.07 -11.62 16 15 C -0.13 -1.57 4.15 -90.96 -0.38 -1.94 16 16 C -0.11 -1.31 7.23 -25.92 -0.19 -1.49 16 17 C 0.06 0.60 4.31 -25.94 -0.11 0.49 16 18 O -0.36 -4.18 10.34 -35.23 -0.36 -4.55 16 19 C 0.10 0.87 5.90 36.01 0.21 1.08 16 20 C -0.09 -0.85 5.51 -104.62 -0.58 -1.43 16 21 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 26 C -0.14 -1.45 7.46 -25.94 -0.19 -1.64 16 27 C -0.03 -0.91 10.85 -17.04 -0.18 -1.09 16 28 N -0.26 -7.77 10.42 30.80 0.32 -7.45 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.14 2.86 8.06 -52.48 -0.42 2.44 16 31 H 0.40 5.41 8.82 -40.82 -0.36 5.05 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 1.59 7.44 -51.93 -0.39 1.21 16 35 H 0.09 0.63 7.87 -51.93 -0.41 0.22 16 36 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.18 4.70 5.92 -52.49 -0.31 4.39 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -35.51 385.37 -9.18 -44.69 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.08 Total: 11.25 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -4.48 Total: -15.77 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.88 Total: -43.95 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.29 Total: -16.17 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.51 -9.18 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746842724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.534 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds