Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86810 * 119.99695 * 2 1 4 4 H 1.48495 * 109.47018 * 274.98490 * 3 2 1 5 5 H 1.48494 * 109.46697 * 34.98289 * 3 2 1 6 6 H 1.48493 * 109.47000 * 154.98424 * 3 2 1 7 7 C 1.38982 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00318 * 185.91692 * 7 2 1 9 9 N 1.37323 * 120.00166 * 5.91193 * 7 2 1 10 10 C 1.36489 * 126.07265 * 174.42222 * 9 7 2 11 11 C 1.35680 * 107.50931 * 180.15878 * 10 9 7 12 12 N 1.40599 * 126.07982 * 179.84090 * 11 10 9 13 13 C 1.34780 * 119.99599 * 179.71840 * 12 11 10 14 14 O 1.21298 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99662 * 179.97438 * 13 12 11 16 16 C 1.53787 * 113.61475 * 179.97438 * 15 13 12 17 17 C 1.53776 * 87.08099 * 219.93389 * 16 15 13 18 18 O 1.42903 * 113.61341 * 139.97525 * 17 16 15 19 19 C 1.42909 * 113.99621 * 149.99864 * 18 17 16 20 20 C 1.50700 * 109.46667 * 180.02562 * 19 18 17 21 21 C 1.38237 * 120.00070 * 269.72522 * 20 19 18 22 22 C 1.38240 * 119.99933 * 179.76842 * 21 20 19 23 23 C 1.38240 * 119.99658 * 0.50992 * 22 21 20 24 24 C 1.38230 * 120.00095 * 359.74698 * 23 22 21 25 25 C 1.38240 * 120.00510 * 359.97438 * 24 23 22 26 26 C 1.53782 * 113.69078 * 82.46586 * 15 13 12 27 27 C 1.40644 * 107.83532 * 359.58042 * 11 10 9 28 28 N 1.30912 * 108.38819 * 0.25997 * 27 11 10 29 29 H 0.97000 * 120.00416 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24861 * 0.02562 * 10 9 7 31 31 H 0.96992 * 120.00329 * 359.71401 * 12 11 10 32 32 H 1.09006 * 112.85202 * 311.19425 * 15 13 12 33 33 H 1.08999 * 113.61446 * 105.38290 * 16 15 13 34 34 H 1.09003 * 113.61036 * 334.48115 * 16 15 13 35 35 H 1.09000 * 113.61733 * 270.79639 * 17 16 15 36 36 H 1.08999 * 109.46784 * 60.00662 * 19 18 17 37 37 H 1.08995 * 109.47210 * 300.00470 * 19 18 17 38 38 H 1.07997 * 119.99982 * 0.02562 * 21 20 19 39 39 H 1.07994 * 120.00051 * 180.23121 * 22 21 20 40 40 H 1.08001 * 119.99900 * 179.72237 * 23 22 21 41 41 H 1.08006 * 119.99902 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.99963 * 179.97438 * 25 24 23 43 43 H 1.08993 * 113.61490 * 25.43573 * 26 15 13 44 44 H 1.09004 * 113.61146 * 254.53878 * 26 15 13 45 45 H 1.07998 * 125.80597 * 180.24023 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6179 0.0000 4 1 2.3890 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5920 7 6 2.0079 -1.2036 -0.0005 8 1 3.0836 -1.2061 0.0959 9 7 1.3269 -2.3897 -0.1236 10 6 1.8863 -3.6286 -0.2459 11 6 0.8734 -4.5259 -0.3450 12 7 1.0112 -5.9176 -0.4892 13 6 -0.0844 -6.6984 -0.5708 14 8 -1.1892 -6.2004 -0.5194 15 6 0.0634 -8.1901 -0.7260 16 6 -1.2786 -8.9373 -0.8036 17 6 -0.6349 -10.0232 0.0745 18 8 -1.5139 -10.5491 1.0710 19 6 -1.2520 -11.9107 1.4170 20 6 -2.2330 -12.3590 2.4695 21 6 -1.9270 -12.2072 3.8090 22 6 -2.8289 -12.6141 4.7744 23 6 -4.0323 -13.1825 4.4003 24 6 -4.3359 -13.3391 3.0609 25 6 -3.4365 -12.9270 2.0954 26 6 0.3072 -8.9282 0.6009 27 6 -0.3390 -3.8167 -0.2717 28 7 -0.0653 -2.5434 -0.1396 29 1 -0.4851 0.8400 0.0004 30 1 2.9425 -3.8536 -0.2631 31 1 1.8947 -6.3159 -0.5300 32 1 0.7635 -8.4664 -1.5145 33 1 -1.5302 -9.2797 -1.8073 34 1 -2.0997 -8.4116 -0.3162 35 1 -0.1272 -10.8015 -0.4954 36 1 -0.2371 -11.9982 1.8048 37 1 -1.3579 -12.5374 0.5315 38 1 -0.9851 -11.7670 4.1012 39 1 -2.5915 -12.4921 5.8208 40 1 -4.7350 -13.5045 5.1546 41 1 -5.2759 -13.7835 2.7687 42 1 -3.6737 -13.0497 1.0490 43 1 -0.0806 -8.4001 1.4719 44 1 1.3362 -9.2634 0.7313 45 1 -1.3276 -4.2491 -0.3170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746842724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = 29.002189 kcal Electronic energy + Delta-G solvation = -27436.574005 eV Core-core repulsion = 23420.919290 eV Total energy + Delta-G solvation = -4015.654715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81444 -40.97747 -40.18615 -39.13136 -36.82425 -35.87991 -34.93183 -32.68555 -32.24183 -31.78827 -29.87469 -27.69089 -26.89132 -26.65204 -25.91222 -23.47908 -22.92594 -22.27798 -22.22356 -21.21733 -20.40451 -19.38321 -18.52162 -17.81710 -17.44591 -17.00315 -16.91399 -16.58535 -16.56852 -16.17911 -15.80773 -15.62344 -15.22484 -15.13154 -14.84371 -14.77068 -14.32623 -14.25285 -13.67574 -13.50758 -13.44653 -13.29816 -13.13888 -13.03112 -12.88591 -12.79881 -12.35497 -12.07108 -11.96700 -11.86197 -11.81618 -11.70790 -11.57971 -11.01374 -10.82873 -10.57445 -10.34377 -10.10282 -9.82374 -9.75207 -8.51711 -8.47471 -6.24672 0.34692 0.49764 1.22527 1.39406 1.53925 1.58066 1.87149 2.06344 2.31573 2.52246 2.65825 2.93493 3.07902 3.21834 3.47555 3.60489 3.79057 3.88733 3.95968 4.03700 4.16179 4.19911 4.29035 4.39298 4.42369 4.44216 4.53551 4.62544 4.65659 4.77355 4.78727 4.85049 5.00592 5.01708 5.07479 5.09203 5.14284 5.15571 5.28883 5.33371 5.51829 5.55032 5.60940 5.67209 5.96367 6.10049 6.32478 6.38948 6.73860 6.81757 7.44290 7.49683 7.68918 8.52287 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.001686 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.792970 B =16599.364387 C =17119.239075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.241 1.241 7 C -0.355 4.355 8 H 0.142 0.858 9 N -0.169 5.169 10 C -0.080 4.080 11 C -0.045 4.045 12 N -0.615 5.615 13 C 0.504 3.496 14 O -0.584 6.584 15 C -0.119 4.119 16 C -0.122 4.122 17 C 0.074 3.926 18 O -0.393 6.393 19 C 0.098 3.902 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.114 4.114 26 C -0.134 4.134 27 C -0.063 4.063 28 N -0.312 5.312 29 H 0.276 0.724 30 H 0.190 0.810 31 H 0.421 0.579 32 H 0.158 0.842 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.062 0.938 44 H 0.112 0.888 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -28.497 2.873 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.164 1.164 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.062 4.938 10 C -0.230 4.230 11 C -0.151 4.151 12 N -0.260 5.260 13 C 0.292 3.708 14 O -0.463 6.463 15 C -0.140 4.140 16 C -0.160 4.160 17 C 0.017 3.983 18 O -0.312 6.312 19 C 0.023 3.977 20 C -0.109 4.109 21 C -0.134 4.134 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.132 4.132 26 C -0.172 4.172 27 C -0.239 4.239 28 N -0.145 5.145 29 H 0.086 0.914 30 H 0.207 0.793 31 H 0.258 0.742 32 H 0.175 0.825 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.081 0.919 44 H 0.131 0.869 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.467 -26.761 3.121 26.982 hybrid contribution 0.556 0.038 -0.065 0.561 sum 2.022 -26.723 3.056 26.973 Atomic orbital electron populations 1.70413 1.08546 1.29088 1.37416 1.26921 0.96450 1.04456 0.94112 0.84561 0.78543 0.74045 0.78935 1.19134 1.20227 1.16394 1.20642 0.93448 0.81037 1.53499 0.84053 1.44850 1.03513 1.05270 1.40184 1.22023 0.98826 0.84539 1.17612 1.17412 0.92645 0.84609 1.20445 1.42524 1.10031 1.02785 1.70620 1.21228 0.83371 0.90185 0.75993 1.90583 1.27835 1.76132 1.51798 1.22552 1.01860 0.87249 1.02317 1.23118 0.96082 0.95699 1.01146 1.23747 0.90848 0.94387 0.89318 1.88075 1.57082 1.27264 1.58823 1.21525 0.97081 0.82789 0.96333 1.19900 0.96455 1.00108 0.94466 1.21331 1.00473 0.98951 0.92640 1.21468 0.94470 0.99002 1.00338 1.21538 0.97227 0.98663 0.96816 1.21478 1.00153 1.00293 0.93209 1.21340 0.93268 0.98033 1.00548 1.23402 1.02298 0.96489 0.94998 1.24123 0.99018 0.91227 1.09489 1.78136 0.92359 1.16597 1.27388 0.91433 0.79307 0.74189 0.82486 0.88720 0.91787 0.85094 0.90921 0.90570 0.85295 0.84350 0.84044 0.84090 0.84923 0.91917 0.86938 0.82018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.88 11.84 21.66 0.26 -48.62 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 3 Si 1.02 39.17 29.56 68.60 2.03 41.20 16 4 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.24 -8.27 7.11 99.48 0.71 -7.56 16 7 C -0.36 -19.12 10.24 84.01 0.86 -18.26 16 8 H 0.14 6.55 7.84 -2.91 -0.02 6.53 16 9 N -0.17 -9.59 3.74 -190.02 -0.71 -10.30 16 10 C -0.08 -3.74 11.49 83.38 0.96 -2.78 16 11 C -0.04 -2.11 6.90 37.73 0.26 -1.85 16 12 N -0.61 -21.13 5.47 -303.93 -1.66 -22.79 16 13 C 0.50 17.44 7.33 87.66 0.64 18.08 16 14 O -0.58 -26.77 13.05 -3.09 -0.04 -26.81 16 15 C -0.12 -2.50 4.15 -11.01 -0.05 -2.54 16 16 C -0.12 -2.75 7.23 31.12 0.23 -2.53 16 17 C 0.07 1.24 4.31 31.11 0.13 1.38 16 18 O -0.39 -8.57 10.34 -148.98 -1.54 -10.11 16 19 C 0.10 1.51 5.90 71.24 0.42 1.93 16 20 C -0.11 -1.99 5.51 -19.86 -0.11 -2.10 16 21 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 22 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 23 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 24 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 25 C -0.11 -1.93 9.70 22.27 0.22 -1.72 16 26 C -0.13 -2.46 7.46 31.11 0.23 -2.23 16 27 C -0.06 -3.60 10.85 85.42 0.93 -2.68 16 28 N -0.31 -19.48 10.42 -56.47 -0.59 -20.07 16 29 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.19 6.88 8.06 -2.91 -0.02 6.86 16 31 H 0.42 10.09 8.82 -92.71 -0.82 9.28 16 32 H 0.16 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 2.01 7.44 -2.39 -0.02 2.00 16 35 H 0.13 1.15 7.87 -2.39 -0.02 1.13 16 36 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 37 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 38 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 40 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 42 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 44 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.16 9.42 5.92 -2.91 -0.02 9.41 16 Total: -1.00 -84.80 385.37 4.02 -80.78 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: 0.20 Total: 39.17 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 6.07 Total: -22.45 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -2.70 Total: -101.78 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.58 Total: -36.92 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -84.80 4.02 -80.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746842724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.783 kcal (2) G-P(sol) polarization free energy of solvation -84.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds