Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47261 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47126 * 120.00473 * 3 2 1 6 6 H 1.48496 * 109.47290 * 240.00448 * 3 2 1 7 7 C 1.38809 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 209.07851 * 7 2 1 9 9 N 1.36928 * 120.00400 * 29.07290 * 7 2 1 10 10 C 1.46495 * 119.99868 * 21.76311 * 9 7 2 11 11 N 1.46498 * 109.47273 * 73.89917 * 10 9 7 12 12 C 1.34768 * 124.17758 * 262.57154 * 11 10 9 13 13 O 1.21239 * 127.15378 * 0.02562 * 12 11 10 14 14 C 1.51577 * 105.68796 * 179.97438 * 12 11 10 15 15 N 1.47313 * 103.59088 * 0.32185 * 14 12 11 16 16 C 1.38712 * 126.68909 * 179.83869 * 15 14 12 17 17 C 1.33582 * 119.99511 * 217.68326 * 16 15 14 18 18 C 1.47555 * 120.00625 * 10.58875 * 17 16 15 19 19 C 1.39655 * 120.15519 * 221.76746 * 18 17 16 20 20 C 1.37940 * 119.84488 * 179.74839 * 19 18 17 21 21 C 1.38369 * 120.15184 * 0.54426 * 20 19 18 22 22 C 1.38368 * 120.30916 * 359.70462 * 21 20 19 23 23 C 1.37939 * 120.15316 * 0.02562 * 22 21 20 24 24 C 1.33791 * 124.18172 * 82.87554 * 11 10 9 25 25 O 1.21542 * 123.76644 * 359.96152 * 24 11 10 26 26 C 1.46509 * 120.00322 * 201.75975 * 9 7 2 27 27 C 1.52998 * 117.49592 * 6.16975 * 26 9 7 28 28 C 1.52997 * 117.49824 * 297.51306 * 26 9 7 29 29 H 0.96999 * 119.99848 * 354.80013 * 1 2 3 30 30 H 1.09004 * 109.47408 * 193.90066 * 10 9 7 31 31 H 1.09004 * 109.47079 * 313.89618 * 10 9 7 32 32 H 1.09005 * 110.76754 * 241.71797 * 14 12 11 33 33 H 1.08994 * 110.56769 * 118.83197 * 14 12 11 34 34 H 1.07994 * 119.99555 * 37.68316 * 16 15 14 35 35 H 1.08003 * 119.99193 * 190.59037 * 17 16 15 36 36 H 1.08009 * 120.07772 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.92524 * 180.27415 * 20 19 18 38 38 H 1.07998 * 119.84035 * 179.72420 * 21 20 19 39 39 H 1.08001 * 119.91954 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.07349 * 180.02562 * 23 22 21 41 41 H 1.09002 * 115.54960 * 151.84287 * 26 9 7 42 42 H 1.09004 * 117.50083 * 0.02562 * 27 26 9 43 43 H 1.09007 * 117.49253 * 145.01668 * 27 26 9 44 44 H 1.08992 * 117.50272 * 214.97811 * 28 26 9 45 45 H 1.09011 * 117.49616 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 2.9881 -1.2613 0.4540 9 7 1.4550 -2.3130 -0.5772 10 6 0.3999 -2.1665 -1.5828 11 7 0.9861 -1.6983 -2.8411 12 6 1.0020 -0.4098 -3.2357 13 8 0.5514 0.5445 -2.6388 14 6 1.7015 -0.4015 -4.5804 15 7 2.0222 -1.8204 -4.8125 16 6 2.6694 -2.3539 -5.9173 17 6 2.2881 -3.5362 -6.4083 18 6 1.0410 -4.1652 -5.9327 19 6 1.0013 -5.5371 -5.6746 20 6 -0.1665 -6.1176 -5.2252 21 6 -1.3001 -5.3459 -5.0407 22 6 -1.2693 -3.9869 -5.2993 23 6 -0.1068 -3.3923 -5.7439 24 6 1.5666 -2.4978 -3.7433 25 8 1.6693 -3.7017 -3.6121 26 6 1.9163 -3.6482 -0.1887 27 6 2.9148 -3.7422 0.9667 28 6 3.3787 -3.9998 -0.4690 29 1 -0.4850 0.8366 0.0761 30 1 -0.0849 -3.1294 -1.7439 31 1 -0.3368 -1.4428 -1.2337 32 1 2.6125 0.1957 -4.5385 33 1 1.0344 -0.0272 -5.3568 34 1 3.4815 -1.8132 -6.3804 35 1 2.8928 -4.0317 -7.1535 36 1 1.8840 -6.1416 -5.8232 37 1 -0.1974 -7.1777 -5.0210 38 1 -2.2129 -5.8064 -4.6928 39 1 -2.1577 -3.3905 -5.1527 40 1 -0.0841 -2.3315 -5.9450 41 1 1.1797 -4.4461 -0.2836 42 1 3.2282 -2.8106 1.4381 43 1 2.8353 -4.6021 1.6318 44 1 3.6044 -5.0289 -0.7480 45 1 3.9976 -3.2377 -0.9430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747789250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = 76.760170 kcal Electronic energy + Delta-G solvation = -31743.807570 eV Core-core repulsion = 27730.223797 eV Total energy + Delta-G solvation = -4013.583774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.18206 -40.14837 -39.07882 -38.84216 -37.19980 -36.44035 -35.21635 -33.52535 -32.05666 -31.67505 -30.34190 -28.17667 -27.64892 -25.66538 -24.16864 -23.30563 -23.18175 -23.04541 -22.02110 -21.60454 -19.94033 -18.98196 -18.21364 -17.99046 -17.46934 -17.30121 -16.96931 -16.66713 -16.22329 -16.17205 -15.78905 -15.63186 -15.33913 -15.11253 -14.95739 -14.81264 -14.32985 -14.13759 -13.92778 -13.76364 -13.54090 -13.26299 -13.06342 -12.83319 -12.78425 -12.39522 -12.23903 -12.08021 -11.94056 -11.89678 -11.73851 -11.58112 -11.42397 -11.12843 -10.93972 -10.50437 -10.32330 -9.73165 -9.66199 -8.81247 -8.70271 -7.92695 -5.35143 0.20053 0.64395 0.95301 1.36977 1.40113 1.44784 1.50615 1.56554 2.21444 2.45457 2.51730 3.08488 3.13260 3.26014 3.40188 3.50805 3.93296 4.07276 4.10187 4.17798 4.19847 4.24470 4.31525 4.35059 4.39471 4.46637 4.52801 4.65077 4.72369 4.85942 4.87766 4.93775 4.97059 5.09211 5.21254 5.23395 5.29108 5.39170 5.42978 5.59252 5.66650 5.70934 5.72622 5.88790 6.03275 6.25123 6.27891 6.54083 6.80494 7.04733 7.40448 7.75522 8.19971 9.05729 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.005247 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.325412 B = 5334.835716 C = 6125.382900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.296 1.296 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.296 4.296 8 H 0.061 0.939 9 N -0.550 5.550 10 C 0.355 3.645 11 N -0.572 5.572 12 C 0.500 3.500 13 O -0.487 6.487 14 C 0.066 3.934 15 N -0.578 5.578 16 C 0.107 3.893 17 C -0.162 4.162 18 C -0.025 4.025 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.133 4.133 24 C 0.693 3.307 25 O -0.540 6.540 26 C 0.104 3.896 27 C -0.179 4.179 28 C -0.194 4.194 29 H 0.255 0.745 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.188 0.812 35 H 0.166 0.834 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -6.849 -15.421 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.223 1.223 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.425 4.425 8 H 0.079 0.921 9 N -0.268 5.268 10 C 0.148 3.852 11 N -0.320 5.320 12 C 0.287 3.713 13 O -0.357 6.357 14 C -0.060 4.060 15 N -0.309 5.309 16 C -0.002 4.002 17 C -0.184 4.184 18 C -0.025 4.025 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.151 4.151 24 C 0.396 3.604 25 O -0.413 6.413 26 C -0.004 4.004 27 C -0.217 4.217 28 C -0.235 4.235 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.204 0.796 35 H 0.184 0.816 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.406 -6.876 -14.972 16.650 hybrid contribution 0.310 1.038 0.514 1.199 sum 2.716 -5.838 -14.459 15.827 Atomic orbital electron populations 1.69604 1.06475 1.26399 1.49538 1.25081 0.95194 0.99779 0.99498 0.85640 0.77970 0.81240 0.77313 1.22258 1.21214 1.21261 1.18915 0.99451 0.87612 1.36475 0.92081 1.43991 1.42399 1.00793 1.39612 1.21433 0.89775 0.98920 0.75098 1.48210 1.53405 1.09375 1.21041 1.21488 0.78692 0.83112 0.87973 1.90753 1.45705 1.38288 1.60993 1.22758 1.03722 0.83723 0.95755 1.44983 1.59496 1.07783 1.18656 1.21616 0.96163 0.95917 0.86538 1.22175 0.96202 0.97671 1.02383 1.18970 0.93368 0.93504 0.96648 1.21296 0.97898 0.94417 0.99131 1.21249 0.93153 1.00466 0.99283 1.21298 0.99198 0.94070 1.01145 1.21158 0.98187 0.95668 1.00039 1.21248 0.93501 0.98931 1.01463 1.16200 0.78344 0.85525 0.80325 1.90921 1.60069 1.11606 1.78735 1.21245 0.90315 0.87737 1.01066 1.23134 1.04797 1.02495 0.91307 1.23124 1.00972 1.00655 0.98746 0.93467 0.92851 0.86329 0.84440 0.83306 0.79564 0.81644 0.85538 0.84868 0.85248 0.86314 0.87226 0.88629 0.90238 0.87346 0.88579 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.66 9.91 21.65 0.21 -49.45 16 2 C 0.01 0.31 3.39 84.86 0.29 0.60 16 3 Si 0.95 46.54 28.41 68.60 1.95 48.49 16 4 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.30 -15.94 8.78 84.03 0.74 -15.20 16 8 H 0.06 3.37 6.36 -2.91 -0.02 3.35 16 9 N -0.55 -27.30 3.10 -689.69 -2.14 -29.44 16 10 C 0.36 17.02 5.76 170.96 0.98 18.00 16 11 N -0.57 -24.01 2.80 -784.20 -2.20 -26.21 16 12 C 0.50 19.91 8.08 87.94 0.71 20.62 16 13 O -0.49 -22.91 13.76 -2.90 -0.04 -22.95 16 14 C 0.07 1.71 7.58 85.76 0.65 2.36 16 15 N -0.58 -16.21 2.03 -657.70 -1.33 -17.54 16 16 C 0.11 2.22 10.40 82.55 0.86 3.08 16 17 C -0.16 -3.51 9.51 23.67 0.23 -3.28 16 18 C -0.02 -0.68 3.17 -20.14 -0.06 -0.75 16 19 C -0.11 -3.01 9.08 22.54 0.20 -2.80 16 20 C -0.12 -3.31 10.03 22.23 0.22 -3.09 16 21 C -0.14 -3.83 10.04 22.33 0.22 -3.61 16 22 C -0.13 -3.88 10.03 22.23 0.22 -3.66 16 23 C -0.13 -3.91 6.95 22.54 0.16 -3.75 16 24 C 0.69 25.91 6.02 179.44 1.08 26.99 16 25 O -0.54 -22.17 13.60 -3.85 -0.05 -22.22 16 26 C 0.10 4.55 6.53 44.99 0.29 4.84 16 27 C -0.18 -6.99 9.77 30.62 0.30 -6.69 16 28 C -0.19 -7.69 10.32 30.62 0.32 -7.37 16 29 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 30 H 0.05 2.51 7.80 -2.38 -0.02 2.49 16 31 H 0.12 6.45 4.88 -2.38 -0.01 6.44 16 32 H 0.14 2.97 8.14 -2.38 -0.02 2.95 16 33 H 0.15 2.78 8.14 -2.39 -0.02 2.77 16 34 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 40 H 0.11 3.08 7.27 -2.91 -0.02 3.06 16 41 H 0.10 3.99 8.08 -2.39 -0.02 3.97 16 42 H 0.08 3.43 6.33 -2.38 -0.02 3.42 16 43 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 44 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 45 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -69.80 368.46 4.82 -64.98 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 1.01 Total: 28.06 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 7.41 Total: 26.28 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -5.45 Total: -122.64 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.09 Total: -45.17 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.95 Total: 48.49 kcal Total: -69.80 4.82 -64.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747789250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.743 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds