Wall clock time and date at job start Sat Apr 11 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99732 * 2 1 4 4 H 1.48502 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00403 * 3 2 1 6 6 H 1.48501 * 109.47257 * 60.00559 * 3 2 1 7 7 C 1.37867 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00482 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47394 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.34768 * 120.00221 * 180.02562 * 11 10 9 13 13 O 1.21598 * 120.00109 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00057 * 180.02562 * 12 11 10 15 15 C 1.40449 * 119.99733 * 184.81563 * 14 12 11 16 16 C 1.40616 * 120.08327 * 302.27991 * 15 14 12 17 17 C 1.36361 * 119.24254 * 180.02562 * 16 15 14 18 18 C 1.40488 * 119.40024 * 359.97438 * 17 16 15 19 19 O 1.22101 * 119.92822 * 179.97438 * 18 17 16 20 20 N 1.34635 * 120.15009 * 359.97438 * 18 17 16 21 21 C 1.46505 * 119.61120 * 179.97438 * 20 18 17 22 22 C 1.50702 * 109.46914 * 90.00079 * 21 20 18 23 23 C 1.38240 * 120.00130 * 269.72650 * 22 21 20 24 24 C 1.38230 * 119.99804 * 179.76584 * 23 22 21 25 25 C 1.38235 * 120.00354 * 0.50740 * 24 23 22 26 26 C 1.38238 * 119.99972 * 359.74677 * 25 24 23 27 27 C 1.38238 * 119.99885 * 90.00297 * 22 21 20 28 28 C 1.35861 * 120.08764 * 122.57985 * 15 14 12 29 29 H 0.96998 * 120.00246 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46762 * 59.99929 * 9 7 2 31 31 H 1.09006 * 109.46783 * 300.00148 * 9 7 2 32 32 H 1.09002 * 109.47179 * 60.00239 * 10 9 7 33 33 H 1.09004 * 109.46913 * 300.00189 * 10 9 7 34 34 H 0.96999 * 119.99525 * 0.02562 * 11 10 9 35 35 H 0.96995 * 119.99758 * 4.81124 * 14 12 11 36 36 H 1.07997 * 120.38022 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.29801 * 179.97438 * 17 16 15 38 38 H 1.09005 * 109.46918 * 330.00573 * 21 20 18 39 39 H 1.08993 * 109.47171 * 210.00055 * 21 20 18 40 40 H 1.07993 * 119.99630 * 0.02562 * 23 22 21 41 41 H 1.08004 * 120.00326 * 180.23170 * 24 23 22 42 42 H 1.08004 * 120.00175 * 179.72257 * 25 24 23 43 43 H 1.07994 * 120.00590 * 179.97438 * 26 25 24 44 44 H 1.07995 * 120.00138 * 359.97438 * 27 22 21 45 45 H 1.08007 * 119.69812 * 359.96909 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0016 13 8 3.4027 -6.0980 -0.0030 14 7 1.5128 -7.2652 -0.0016 15 6 2.2115 -8.4793 0.1001 16 6 3.1983 -8.8061 -0.8468 17 6 3.8657 -9.9897 -0.7320 18 6 3.5546 -10.8568 0.3287 19 8 4.1459 -11.9192 0.4405 20 7 2.6059 -10.5189 1.2223 21 6 2.2906 -11.4323 2.3235 22 6 3.1670 -11.1133 3.5073 23 6 4.3904 -11.7410 3.6507 24 6 5.1963 -11.4448 4.7339 25 6 4.7745 -10.5288 5.6794 26 6 3.5489 -9.9050 5.5388 27 6 2.7451 -10.1974 4.4527 28 6 1.9314 -9.3438 1.1101 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8727 -3.6047 0.8877 33 1 2.8713 -3.6038 -0.8923 34 1 0.5429 -4.9308 -0.0005 35 1 0.5454 -7.2666 -0.0717 36 1 3.4245 -8.1279 -1.6563 37 1 4.6265 -10.2581 -1.4500 38 1 2.4689 -12.4597 2.0058 39 1 1.2440 -11.3152 2.6043 40 1 4.7181 -12.4596 2.9142 41 1 6.1537 -11.9323 4.8441 42 1 5.4023 -10.3007 6.5281 43 1 3.2190 -9.1897 6.2776 44 1 1.7876 -9.7101 4.3429 45 1 1.1700 -9.0925 1.8338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752517221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:33 Heat of formation + Delta-G solvation = -26.082051 kcal Electronic energy + Delta-G solvation = -28026.195480 eV Core-core repulsion = 24008.152133 eV Total energy + Delta-G solvation = -4018.043347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58254 -41.08259 -39.98938 -38.24318 -36.81514 -36.19956 -34.96018 -34.52256 -32.49981 -31.84365 -31.57608 -29.73478 -27.76442 -26.65207 -24.92518 -24.18153 -23.44722 -22.92911 -22.39947 -21.76732 -19.74609 -19.01060 -18.47062 -18.32223 -17.91379 -17.75074 -16.99910 -16.56681 -16.50475 -16.41046 -15.99586 -15.87729 -15.75901 -15.19962 -15.14969 -14.92408 -14.33877 -14.29903 -14.23082 -14.10178 -13.58118 -13.47233 -13.18635 -13.15277 -12.94162 -12.91917 -12.50000 -12.27194 -12.18886 -11.93267 -11.66995 -11.48773 -11.23592 -11.19410 -11.13039 -10.61376 -10.57024 -9.93044 -9.87456 -9.81516 -8.80517 -8.22008 -6.31153 -0.21751 0.23765 0.44924 0.67223 1.42144 1.42307 1.45575 1.56708 1.94037 2.13385 2.43142 2.58843 2.86018 3.13411 3.29816 3.65512 3.66741 3.70658 3.91515 3.96507 4.09042 4.13673 4.24396 4.30673 4.47978 4.51659 4.56957 4.59283 4.66765 4.73993 4.91991 4.98069 5.02429 5.07944 5.10980 5.30089 5.35339 5.49165 5.54054 5.55739 5.57304 5.64667 5.69511 5.82111 5.98036 6.02457 6.04314 6.20555 6.82578 6.92382 7.11600 7.38161 7.59723 8.89852 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002107 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.321942 B =13286.154766 C =14410.418548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.161 3.839 11 N -0.725 5.725 12 C 0.701 3.299 13 O -0.627 6.627 14 N -0.665 5.665 15 C 0.041 3.959 16 C 0.004 3.996 17 C -0.257 4.257 18 C 0.506 3.494 19 O -0.589 6.589 20 N -0.478 5.478 21 C 0.134 3.866 22 C -0.127 4.127 23 C -0.112 4.112 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.134 4.134 27 C -0.104 4.104 28 C 0.143 3.857 29 H 0.265 0.735 30 H 0.011 0.989 31 H 0.012 0.988 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.411 0.589 35 H 0.425 0.575 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -24.733 8.349 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.037 3.963 11 N -0.380 5.380 12 C 0.402 3.598 13 O -0.507 6.507 14 N -0.319 5.319 15 C -0.056 4.056 16 C -0.019 4.019 17 C -0.279 4.279 18 C 0.310 3.690 19 O -0.476 6.476 20 N -0.187 5.187 21 C 0.014 3.986 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.157 4.157 25 C -0.138 4.138 26 C -0.151 4.151 27 C -0.122 4.122 28 C 0.013 3.987 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.247 0.753 35 H 0.265 0.735 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.119 0.881 39 H 0.163 0.837 40 H 0.132 0.868 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.161 0.839 44 H 0.170 0.830 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.227 -25.272 8.449 26.648 hybrid contribution -0.113 1.100 -0.370 1.166 sum -0.340 -24.172 8.079 25.488 Atomic orbital electron populations 1.70047 1.07383 1.27843 1.51225 1.25804 0.95764 1.02876 0.94584 0.85459 0.79008 0.79126 0.77833 1.19118 1.20369 1.20282 1.21497 0.93569 0.92011 1.51153 0.92458 1.19134 0.94244 0.91452 0.96581 1.21081 0.94594 0.80971 0.99703 1.45136 1.10604 1.04047 1.78216 1.16122 0.85105 0.81025 0.77575 1.90922 1.13702 1.86966 1.59132 1.41907 1.10358 1.00857 1.78811 1.16426 1.01947 0.88800 0.98465 1.21610 0.90785 0.93813 0.95707 1.21984 1.07093 0.96546 1.02290 1.17236 0.80514 0.87714 0.83540 1.90907 1.53196 1.26269 1.77180 1.45432 1.31134 1.17677 1.24408 1.21097 1.00953 0.94401 0.82159 1.20092 0.96262 0.99378 0.97041 1.21315 0.94431 0.99667 0.97615 1.21414 1.00345 0.99038 0.94867 1.21545 0.96904 0.95993 0.99325 1.21524 0.94681 1.00137 0.98794 1.21403 1.00969 0.96251 0.93566 1.22250 0.96441 0.84590 0.95429 0.92597 0.97105 0.96980 0.93771 0.93806 0.75331 0.73499 0.85293 0.83159 0.88117 0.83669 0.86782 0.85072 0.84261 0.83905 0.83047 0.77400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.59 13.29 21.44 0.28 -52.31 16 2 C 0.01 0.46 5.46 84.65 0.46 0.93 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -29.40 9.11 25.60 0.23 -29.16 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.02 1.11 5.09 29.85 0.15 1.27 16 10 C 0.16 6.48 5.61 86.38 0.48 6.96 16 11 N -0.73 -22.07 5.56 -478.52 -2.66 -24.73 16 12 C 0.70 20.94 8.42 179.06 1.51 22.45 16 13 O -0.63 -24.80 15.45 -4.02 -0.06 -24.86 16 14 N -0.66 -12.54 5.30 -317.64 -1.68 -14.23 16 15 C 0.04 0.81 5.77 37.79 0.22 1.03 16 16 C 0.00 0.10 8.91 22.41 0.20 0.30 16 17 C -0.26 -6.33 9.98 22.38 0.22 -6.11 16 18 C 0.51 12.85 7.40 84.81 0.63 13.48 16 19 O -0.59 -18.45 16.11 -5.65 -0.09 -18.54 16 20 N -0.48 -8.34 2.57 -654.44 -1.68 -10.02 16 21 C 0.13 1.72 5.46 85.63 0.47 2.18 16 22 C -0.13 -2.09 5.46 -19.86 -0.11 -2.20 16 23 C -0.11 -2.28 9.70 22.27 0.22 -2.06 16 24 C -0.14 -2.55 10.05 22.27 0.22 -2.33 16 25 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 26 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 27 C -0.10 -1.41 9.70 22.27 0.22 -1.20 16 28 C 0.14 1.96 10.20 83.50 0.85 2.81 16 29 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.41 9.93 8.49 -92.71 -0.79 9.14 16 35 H 0.43 4.54 8.84 -92.71 -0.82 3.72 16 36 H 0.13 3.24 7.93 -2.91 -0.02 3.22 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.10 1.54 7.32 -2.38 -0.02 1.52 16 39 H 0.15 0.54 7.95 -2.39 -0.02 0.52 16 40 H 0.11 2.62 7.53 -2.91 -0.02 2.60 16 41 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 44 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.21 0.92 8.04 -2.91 -0.02 0.89 16 Total: -1.00 -78.03 390.58 1.97 -76.05 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.58 Total: 19.00 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.42 Total: 4.92 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -5.74 Total: -101.29 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.15 Total: -43.40 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -78.03 1.97 -76.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752517221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.970 kcal (2) G-P(sol) polarization free energy of solvation -78.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds