Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86803 * 120.00294 * 2 1 4 4 H 1.48503 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47119 * 300.00144 * 3 2 1 6 6 H 1.48497 * 109.47092 * 60.00241 * 3 2 1 7 7 C 1.38653 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 O 1.34838 * 120.00103 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00234 * 185.06081 * 9 7 2 11 11 C 1.38903 * 120.06856 * 354.48526 * 10 9 7 12 12 C 1.38074 * 119.92555 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.07346 * 359.75367 * 12 11 10 14 14 C 1.38278 * 120.13494 * 0.50126 * 13 12 11 15 15 C 1.50704 * 119.96132 * 179.76979 * 14 13 12 16 16 C 1.50706 * 109.46985 * 269.72404 * 15 14 13 17 17 O 1.21274 * 119.99761 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99513 * 180.02562 * 16 15 14 19 19 C 1.46502 * 119.99605 * 180.02562 * 18 16 15 20 20 C 1.52994 * 109.47156 * 180.02562 * 19 18 16 21 21 N 1.46493 * 109.47373 * 179.97438 * 20 19 18 22 22 C 1.39009 * 120.00300 * 179.97438 * 21 20 19 23 23 C 1.39139 * 119.70402 * 0.02562 * 22 21 20 24 24 C 1.38291 * 119.09635 * 179.97438 * 23 22 21 25 25 C 1.38888 * 118.50808 * 359.97438 * 24 23 22 26 26 C 1.38030 * 119.32603 * 0.27647 * 25 24 23 27 27 N 1.31967 * 120.85396 * 359.44672 * 26 25 24 28 28 C 1.38115 * 120.07030 * 359.50038 * 14 13 12 29 29 H 0.97001 * 119.99609 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.03130 * 359.96154 * 11 10 9 31 31 H 1.08005 * 119.96391 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.92893 * 180.27730 * 13 12 11 33 33 H 1.09000 * 109.46885 * 149.72897 * 15 14 13 34 34 H 1.08996 * 109.47301 * 29.72439 * 15 14 13 35 35 H 0.96993 * 120.00455 * 0.02562 * 18 16 15 36 36 H 1.09000 * 109.47005 * 60.00118 * 19 18 16 37 37 H 1.09001 * 109.47305 * 300.00079 * 19 18 16 38 38 H 1.09005 * 109.47117 * 59.99682 * 20 19 18 39 39 H 1.09001 * 109.47063 * 300.00208 * 20 19 18 40 40 H 0.97002 * 119.99985 * 0.02562 * 21 20 19 41 41 H 1.08001 * 120.45283 * 0.02562 * 23 22 21 42 42 H 1.07996 * 120.75065 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.33830 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.56892 * 179.70165 * 26 25 24 45 45 H 1.08005 * 120.03428 * 180.23397 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4573 -3.4395 0.0926 12 6 4.2023 -4.5969 0.2013 13 6 3.5685 -5.8199 0.3282 14 6 2.1875 -5.8885 0.3361 15 6 1.5010 -7.2235 0.4693 16 6 1.2649 -7.8058 -0.9005 17 8 1.6196 -7.1970 -1.8875 18 7 0.6596 -9.0032 -1.0285 19 6 0.4306 -9.5696 -2.3600 20 6 -0.2676 -10.9242 -2.2249 21 7 -0.4971 -11.4903 -3.5564 22 6 -1.1215 -12.7252 -3.6885 23 6 -1.5265 -13.4181 -2.5519 24 6 -2.1470 -14.6453 -2.6979 25 6 -2.3431 -15.1405 -3.9806 26 6 -1.9113 -14.4020 -5.0638 27 7 -1.3266 -13.2310 -4.8947 28 6 1.4366 -4.7344 0.2277 29 1 -0.4849 0.8401 0.0004 30 1 3.9527 -2.4846 -0.0026 31 1 5.2812 -4.5470 0.1909 32 1 4.1535 -6.7233 0.4175 33 1 0.5458 -7.0917 0.9776 34 1 2.1303 -7.8996 1.0480 35 1 0.3756 -9.4899 -0.2391 36 1 1.3860 -9.7018 -2.8678 37 1 -0.1982 -8.8934 -2.9393 38 1 -1.2230 -10.7915 -1.7172 39 1 0.3608 -11.6006 -1.6455 40 1 -0.2127 -11.0037 -4.3459 41 1 -1.3593 -13.0028 -1.5691 42 1 -2.4725 -15.2058 -1.8341 43 1 -2.8249 -16.0956 -4.1289 44 1 -2.0574 -14.7855 -6.0627 45 1 0.3579 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760312551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = -22.433487 kcal Electronic energy + Delta-G solvation = -26815.468486 eV Core-core repulsion = 22797.583353 eV Total energy + Delta-G solvation = -4017.885133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18972 -40.99745 -40.38258 -38.28366 -37.52345 -35.42379 -34.34395 -33.51733 -33.26894 -31.49113 -30.84753 -29.34529 -27.93766 -27.18146 -24.94881 -23.83458 -23.25718 -22.84813 -22.66587 -21.44105 -19.52018 -18.89075 -18.65657 -18.14623 -17.46423 -17.02023 -16.86058 -16.69265 -16.44873 -16.37803 -16.07805 -15.70119 -15.50772 -15.31872 -15.09101 -14.99603 -14.70853 -14.55476 -14.31680 -13.97663 -13.82896 -13.60952 -13.19799 -12.98294 -12.89616 -12.71010 -12.57815 -12.48153 -12.36232 -12.21348 -12.08211 -11.20321 -11.20219 -11.02189 -10.80481 -10.65220 -10.35711 -10.15655 -9.63070 -8.97157 -8.67748 -8.47353 -6.15829 0.40828 0.52429 0.58138 0.76568 1.33794 1.42474 1.52537 1.66963 1.78623 2.17382 2.56957 2.87245 3.04145 3.19335 3.45405 3.60005 3.80647 3.81982 4.00982 4.06085 4.11610 4.17082 4.28885 4.33135 4.35515 4.43501 4.46920 4.52693 4.59386 4.68145 4.75087 4.82054 4.84451 4.91298 5.08213 5.13472 5.17891 5.31483 5.36909 5.45327 5.66000 5.69536 5.73714 5.76222 6.03037 6.06543 6.24718 6.52169 6.57333 6.97445 7.26041 7.30112 7.79189 8.76438 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.001524 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.515199 B =18372.524931 C =18999.554223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.236 6.236 10 C 0.110 3.890 11 C -0.247 4.247 12 C -0.075 4.075 13 C -0.180 4.180 14 C -0.028 4.028 15 C -0.089 4.089 16 C 0.515 3.485 17 O -0.579 6.579 18 N -0.712 5.712 19 C 0.113 3.887 20 C 0.131 3.869 21 N -0.729 5.729 22 C 0.382 3.618 23 C -0.247 4.247 24 C -0.038 4.038 25 C -0.237 4.237 26 C 0.129 3.871 27 N -0.581 5.581 28 C -0.192 4.192 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.423 0.577 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.403 0.597 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.171 0.829 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 -32.176 0.313 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.143 6.143 10 C 0.060 3.940 11 C -0.267 4.267 12 C -0.093 4.093 13 C -0.198 4.198 14 C -0.028 4.028 15 C -0.128 4.128 16 C 0.303 3.697 17 O -0.458 6.458 18 N -0.367 5.367 19 C -0.011 4.011 20 C 0.006 3.994 21 N -0.363 5.363 22 C 0.147 3.853 23 C -0.271 4.271 24 C -0.064 4.064 25 C -0.260 4.260 26 C -0.027 4.027 27 N -0.300 5.300 28 C -0.212 4.212 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.261 0.739 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.238 0.762 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.172 0.828 44 H 0.188 0.812 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.803 -31.045 -0.920 31.069 hybrid contribution -0.218 0.886 0.224 0.940 sum -1.022 -30.159 -0.696 30.184 Atomic orbital electron populations 1.70195 1.08020 1.28666 1.49148 1.26602 0.96890 1.02715 0.95898 0.84515 0.78186 0.74761 0.78619 1.17548 1.19439 1.19027 1.21861 0.92480 0.81516 1.53136 0.88291 1.83934 1.35945 1.12598 1.81797 1.19910 0.91682 0.87990 0.94432 1.21295 0.93169 1.00231 1.11961 1.21141 1.00213 0.91574 0.96394 1.20996 0.93575 0.98018 1.07221 1.19240 0.93767 0.93045 0.96798 1.20705 1.04488 0.93452 0.94181 1.20960 0.76436 0.80660 0.91668 1.90775 1.51942 1.61228 1.41831 1.45517 1.61436 1.20300 1.09442 1.21230 1.00500 0.93988 0.85425 1.21422 1.01128 0.92712 0.84103 1.44312 1.64754 1.18428 1.08760 1.18610 0.90133 0.86713 0.89885 1.21689 1.08182 0.98511 0.98756 1.21757 0.92304 0.93716 0.98592 1.22163 1.06931 1.03638 0.93248 1.22824 0.91079 0.88114 1.00730 1.67113 1.21524 1.16394 1.24964 1.20239 0.99319 0.90466 1.11146 0.91875 0.86612 0.83788 0.83321 0.85714 0.83403 0.73871 0.91724 0.92648 0.89791 0.89168 0.76165 0.83179 0.82262 0.82783 0.81237 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.14 13.67 21.61 0.30 -57.85 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 3 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.41 -25.14 9.49 67.92 0.64 -24.49 16 8 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 9 O -0.24 -14.90 9.76 -22.80 -0.22 -15.12 16 10 C 0.11 5.80 6.65 22.58 0.15 5.95 16 11 C -0.25 -11.48 9.17 22.39 0.21 -11.28 16 12 C -0.08 -2.74 10.04 22.25 0.22 -2.52 16 13 C -0.18 -5.78 9.70 22.30 0.22 -5.57 16 14 C -0.03 -0.95 4.37 -19.88 -0.09 -1.03 16 15 C -0.09 -1.86 5.83 29.11 0.17 -1.69 16 16 C 0.52 12.63 7.82 87.66 0.69 13.31 16 17 O -0.58 -21.60 16.03 -3.01 -0.05 -21.65 16 18 N -0.71 -10.17 5.56 -463.06 -2.57 -12.74 16 19 C 0.11 1.71 5.79 86.38 0.50 2.21 16 20 C 0.13 1.23 5.00 86.38 0.43 1.66 16 21 N -0.73 -10.76 5.73 -345.08 -1.98 -12.74 16 22 C 0.38 6.60 7.65 133.06 1.02 7.62 16 23 C -0.25 -3.06 9.33 22.50 0.21 -2.85 16 24 C -0.04 -0.38 10.17 22.44 0.23 -0.15 16 25 C -0.24 -2.54 10.11 22.38 0.23 -2.32 16 26 C 0.13 1.89 11.17 84.62 0.95 2.84 16 27 N -0.58 -11.62 10.39 -193.26 -2.01 -13.63 16 28 C -0.19 -8.62 9.65 22.39 0.22 -8.40 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 31 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.12 2.09 8.08 -2.39 -0.02 2.07 16 34 H 0.15 1.73 8.08 -2.39 -0.02 1.71 16 35 H 0.42 2.31 8.47 -92.71 -0.79 1.53 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.60 7.93 -2.38 -0.02 0.59 16 39 H 0.09 0.53 7.93 -2.39 -0.02 0.51 16 40 H 0.40 6.47 8.60 -92.71 -0.80 5.68 16 41 H 0.15 1.11 6.71 -2.91 -0.02 1.10 16 42 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 44 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -90.13 389.01 1.40 -88.73 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -0.54 Total: 26.36 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 6.45 Total: -27.65 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -6.26 Total: -96.95 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.27 Total: -36.77 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -90.13 1.40 -88.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760312551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.297 kcal (2) G-P(sol) polarization free energy of solvation -90.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds