Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48506 * 109.47031 * 270.00084 * 3 2 1 5 5 H 1.48498 * 109.47047 * 30.00432 * 3 2 1 6 6 H 1.48498 * 109.46794 * 150.00623 * 3 2 1 7 7 C 1.39950 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99706 * 163.47691 * 7 2 1 9 9 C 1.41396 * 119.99907 * 343.47749 * 7 2 1 10 10 C 1.40735 * 120.24451 * 334.44733 * 9 7 2 11 11 C 1.37597 * 119.74541 * 180.02562 * 10 9 7 12 12 C 1.38664 * 120.24691 * 0.02562 * 11 10 9 13 13 C 1.38607 * 120.50161 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.25009 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.13091 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46918 * 265.02541 * 15 14 13 17 17 O 1.21285 * 120.00205 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99938 * 180.02562 * 16 15 14 19 19 C 1.46924 * 120.62873 * 4.98404 * 18 16 15 20 20 C 1.53623 * 108.54524 * 126.37324 * 19 18 16 21 21 C 1.53039 * 109.24161 * 54.85039 * 20 19 18 22 22 C 1.53034 * 109.54040 * 298.51654 * 21 20 19 23 23 C 1.46928 * 120.62918 * 185.26451 * 18 16 15 24 24 H 1.09005 * 109.58462 * 113.79763 * 23 18 16 25 25 C 1.50695 * 109.58548 * 353.51241 * 23 18 16 26 26 N 1.34496 * 126.28569 * 112.54371 * 25 23 18 27 27 C 1.31127 * 105.61560 * 179.89937 * 26 25 23 28 28 O 1.33650 * 106.89678 * 0.35876 * 27 26 25 29 29 N 1.21299 * 109.80464 * 359.76338 * 28 27 26 30 30 H 0.97005 * 120.00174 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.12486 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.87681 * 179.72353 * 11 10 9 33 33 H 1.08002 * 119.74794 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.87717 * 179.97438 * 13 12 11 35 35 H 1.09004 * 109.47139 * 25.01515 * 15 14 13 36 36 H 1.08995 * 109.47468 * 145.02118 * 15 14 13 37 37 H 1.09009 * 109.58480 * 246.20484 * 19 18 16 38 38 H 1.08998 * 109.58938 * 6.62730 * 19 18 16 39 39 H 1.08995 * 109.63021 * 294.86323 * 20 19 18 40 40 H 1.08998 * 109.45902 * 174.73838 * 20 19 18 41 41 H 1.09001 * 109.45857 * 178.49063 * 21 20 19 42 42 H 1.09001 * 109.44624 * 58.52904 * 21 20 19 43 43 H 1.09002 * 109.49862 * 301.40777 * 22 21 20 44 44 H 1.09002 * 109.49942 * 181.31635 * 22 21 20 45 45 H 1.08002 * 126.55217 * 180.12238 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4400 0.6999 7 6 2.0079 -1.2120 -0.0005 8 1 3.0544 -1.2312 -0.2666 9 6 1.3446 -2.4114 0.3472 10 6 0.2110 -2.3786 1.1805 11 6 -0.4262 -3.5520 1.5128 12 6 0.0450 -4.7636 1.0303 13 6 1.1612 -4.8079 0.2097 14 6 1.8144 -3.6466 -0.1357 15 6 3.0281 -3.6980 -1.0275 16 6 4.2738 -3.7214 -0.1797 17 8 4.1849 -3.6982 1.0297 18 7 5.4868 -3.7671 -0.7654 19 6 5.6161 -3.6848 -2.2266 20 6 6.5966 -2.5523 -2.5674 21 6 7.9176 -2.7907 -1.8323 22 6 7.6725 -2.7770 -0.3217 23 6 6.7046 -3.9064 0.0449 24 1 7.1721 -4.8694 -0.1607 25 6 6.3512 -3.8181 1.5071 26 7 6.4328 -4.8142 2.4072 27 6 6.0326 -4.2966 3.5437 28 8 5.7169 -3.0210 3.2998 29 7 5.9063 -2.7674 2.1288 30 1 -0.4850 0.8401 0.0004 31 1 -0.1573 -1.4360 1.5577 32 1 -1.2936 -3.5297 2.1557 33 1 -0.4611 -5.6797 1.2965 34 1 1.5198 -5.7571 -0.1601 35 1 2.9899 -4.5977 -1.6418 36 1 3.0433 -2.8187 -1.6715 37 1 5.9966 -4.6301 -2.6136 38 1 4.6425 -3.4722 -2.6682 39 1 6.1747 -1.5967 -2.2565 40 1 6.7759 -2.5384 -3.6424 41 1 8.6252 -2.0036 -2.0926 42 1 8.3264 -3.7578 -2.1250 43 1 7.2404 -1.8191 -0.0320 44 1 8.6174 -2.9235 0.2015 45 1 5.9667 -4.8051 4.4942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776941114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = 73.037511 kcal Electronic energy + Delta-G solvation = -31118.913605 eV Core-core repulsion = 27105.168404 eV Total energy + Delta-G solvation = -4013.745200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.03148 -40.11119 -37.82688 -36.74786 -35.33496 -33.59427 -32.98985 -32.53830 -31.37693 -30.45584 -29.42013 -27.09507 -25.56445 -24.82483 -24.05897 -23.70593 -21.89191 -21.06226 -20.89350 -19.75486 -18.64743 -17.74578 -17.37130 -17.11378 -16.32705 -15.87473 -15.48881 -15.06438 -14.88039 -14.58234 -14.44785 -14.06263 -14.02217 -13.62561 -13.41578 -12.98023 -12.84970 -12.59682 -12.49633 -12.00629 -11.69886 -11.55004 -11.43149 -11.36453 -11.22626 -11.09863 -10.98812 -10.96393 -10.88454 -10.72825 -10.67847 -10.59632 -10.36971 -10.08559 -9.46006 -9.33523 -9.11904 -8.44504 -8.41570 -7.28647 -7.26194 -6.71057 -4.30418 1.78902 2.57970 2.82147 2.99677 3.08600 3.15632 3.22767 3.30181 3.46123 3.54578 3.90297 3.97188 4.52352 4.65400 4.69020 4.78126 4.86190 4.99758 5.16585 5.27122 5.41407 5.46544 5.61510 5.69754 5.75696 5.78397 5.82456 5.88227 5.99878 6.02163 6.09215 6.17250 6.25720 6.29792 6.42471 6.44591 6.53126 6.67832 6.82245 7.11689 7.32405 7.45184 7.63690 7.73946 7.95694 8.10377 8.15998 8.34591 8.67624 8.72033 8.77454 8.95250 9.04789 10.22927 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.005216 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.786419 B = 5367.173405 C = 6117.785112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.451 4.451 8 H 0.072 0.928 9 C 0.131 3.869 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.241 4.241 13 C -0.080 4.080 14 C -0.183 4.183 15 C -0.065 4.065 16 C 0.522 3.478 17 O -0.509 6.509 18 N -0.624 5.624 19 C 0.112 3.888 20 C -0.139 4.139 21 C -0.114 4.114 22 C -0.128 4.128 23 C 0.242 3.758 24 H 0.094 0.906 25 C 0.185 3.815 26 N -0.489 5.489 27 C 0.143 3.857 28 O 0.090 5.910 29 N -0.339 5.339 30 H 0.279 0.721 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.201 -5.003 -2.675 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.480 4.480 8 H 0.091 0.909 9 C 0.129 3.871 10 C -0.178 4.178 11 C -0.125 4.125 12 C -0.260 4.260 13 C -0.098 4.098 14 C -0.185 4.185 15 C -0.105 4.105 16 C 0.312 3.688 17 O -0.381 6.381 18 N -0.362 5.362 19 C -0.011 4.011 20 C -0.177 4.177 21 C -0.152 4.152 22 C -0.167 4.167 23 C 0.137 3.863 24 H 0.112 0.888 25 C -0.087 4.087 26 N -0.224 5.224 27 C -0.098 4.098 28 O 0.027 5.973 29 N -0.044 5.044 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 13.917 -4.367 -2.726 14.839 hybrid contribution 0.100 0.541 0.288 0.621 sum 14.016 -3.826 -2.438 14.732 Atomic orbital electron populations 1.69821 1.07463 1.29022 1.35772 1.25864 0.94655 1.01102 0.92328 0.86452 0.81039 0.81048 0.79120 1.19565 1.20062 1.18380 1.19435 0.97085 0.90938 1.40569 0.90949 1.17316 0.90709 0.91210 0.87911 1.21287 0.98981 0.96651 1.00909 1.20664 0.98631 0.93461 0.99753 1.20276 1.01518 0.96088 1.08124 1.20272 0.95911 0.95439 0.98217 1.19030 0.99162 0.94021 1.06245 1.20276 0.90406 1.02427 0.97388 1.21303 0.83957 0.74181 0.89387 1.90662 1.85175 1.47378 1.14887 1.48345 1.04979 1.76056 1.06813 1.21816 1.01233 0.98441 0.79571 1.22040 0.95611 0.99658 1.00437 1.21479 0.97466 1.02186 0.94080 1.21954 0.98619 0.99105 0.96982 1.19057 0.86065 0.99772 0.81390 0.88787 1.24786 0.99772 0.85670 0.98512 1.71614 1.21833 1.29435 0.99545 1.29986 0.96075 0.83478 1.00271 1.85258 1.60934 1.29516 1.21617 1.74519 1.14618 1.24871 0.90347 0.91005 0.86570 0.89657 0.89777 0.89991 0.90705 0.88684 0.91457 0.88815 0.90925 0.90523 0.91294 0.91590 0.90427 0.90799 0.73299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.90 10.95 55.55 0.61 -20.29 16 2 C 0.08 2.00 5.16 -17.34 -0.09 1.91 16 3 Si 0.90 19.48 29.59 -169.99 -5.03 14.45 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.45 -12.13 8.15 -37.74 -0.31 -12.44 16 8 H 0.07 1.94 6.66 -52.49 -0.35 1.59 16 9 C 0.13 3.57 5.57 -106.82 -0.59 2.97 16 10 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.24 -5.75 10.05 -39.29 -0.39 -6.15 16 13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.29 16 14 C -0.18 -4.49 4.43 -103.91 -0.46 -4.95 16 15 C -0.07 -1.32 3.58 -29.03 -0.10 -1.42 16 16 C 0.52 10.57 7.25 -10.98 -0.08 10.49 16 17 O -0.51 -12.14 11.43 -4.36 -0.05 -12.19 16 18 N -0.62 -9.87 2.97 -166.27 -0.49 -10.36 16 19 C 0.11 1.30 6.36 -3.49 -0.02 1.28 16 20 C -0.14 -1.40 6.10 -26.39 -0.16 -1.56 16 21 C -0.11 -1.07 5.88 -26.69 -0.16 -1.23 16 22 C -0.13 -1.56 5.34 -26.62 -0.14 -1.70 16 23 C 0.24 3.59 3.42 -68.75 -0.24 3.35 16 24 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 25 C 0.18 3.29 4.46 -156.38 -0.70 2.59 16 26 N -0.49 -8.22 11.55 -13.72 -0.16 -8.38 16 27 C 0.14 2.03 13.39 51.98 0.70 2.73 16 28 O 0.09 1.60 11.26 8.17 0.09 1.69 16 29 N -0.34 -6.72 10.02 30.87 0.31 -6.41 16 30 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 31 H 0.12 3.27 6.19 -52.49 -0.32 2.94 16 32 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.07 1.29 8.02 -51.93 -0.42 0.87 16 36 H 0.10 1.89 6.39 -51.93 -0.33 1.56 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.09 1.08 5.96 -51.93 -0.31 0.77 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.25 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -34.33 365.39 -9.02 -43.35 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.94 Total: 6.78 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -3.87 Total: -14.14 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.27 Total: -45.44 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.04 Total: -10.51 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.33 -9.02 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776941114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.385 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds