Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48506 * 109.47031 * 270.00084 * 3 2 1 5 5 H 1.48498 * 109.47047 * 30.00432 * 3 2 1 6 6 H 1.48498 * 109.46794 * 150.00623 * 3 2 1 7 7 C 1.39950 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99706 * 163.47691 * 7 2 1 9 9 C 1.41396 * 119.99907 * 343.47749 * 7 2 1 10 10 C 1.40735 * 120.24451 * 334.44733 * 9 7 2 11 11 C 1.37597 * 119.74541 * 180.02562 * 10 9 7 12 12 C 1.38664 * 120.24691 * 0.02562 * 11 10 9 13 13 C 1.38607 * 120.50161 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.25009 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.13091 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46918 * 265.02541 * 15 14 13 17 17 O 1.21285 * 120.00205 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99938 * 180.02562 * 16 15 14 19 19 C 1.46924 * 120.62873 * 4.98404 * 18 16 15 20 20 C 1.53623 * 108.54524 * 126.37324 * 19 18 16 21 21 C 1.53039 * 109.24161 * 54.85039 * 20 19 18 22 22 C 1.53034 * 109.54040 * 298.51654 * 21 20 19 23 23 C 1.46928 * 120.62918 * 185.26451 * 18 16 15 24 24 H 1.09005 * 109.58462 * 113.79763 * 23 18 16 25 25 C 1.50695 * 109.58548 * 353.51241 * 23 18 16 26 26 N 1.34496 * 126.28569 * 112.54371 * 25 23 18 27 27 C 1.31127 * 105.61560 * 179.89937 * 26 25 23 28 28 O 1.33650 * 106.89678 * 0.35876 * 27 26 25 29 29 N 1.21299 * 109.80464 * 359.76338 * 28 27 26 30 30 H 0.97005 * 120.00174 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.12486 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.87681 * 179.72353 * 11 10 9 33 33 H 1.08002 * 119.74794 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.87717 * 179.97438 * 13 12 11 35 35 H 1.09004 * 109.47139 * 25.01515 * 15 14 13 36 36 H 1.08995 * 109.47468 * 145.02118 * 15 14 13 37 37 H 1.09009 * 109.58480 * 246.20484 * 19 18 16 38 38 H 1.08998 * 109.58938 * 6.62730 * 19 18 16 39 39 H 1.08995 * 109.63021 * 294.86323 * 20 19 18 40 40 H 1.08998 * 109.45902 * 174.73838 * 20 19 18 41 41 H 1.09001 * 109.45857 * 178.49063 * 21 20 19 42 42 H 1.09001 * 109.44624 * 58.52904 * 21 20 19 43 43 H 1.09002 * 109.49862 * 301.40777 * 22 21 20 44 44 H 1.09002 * 109.49942 * 181.31635 * 22 21 20 45 45 H 1.08002 * 126.55217 * 180.12238 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4400 0.6999 7 6 2.0079 -1.2120 -0.0005 8 1 3.0544 -1.2312 -0.2666 9 6 1.3446 -2.4114 0.3472 10 6 0.2110 -2.3786 1.1805 11 6 -0.4262 -3.5520 1.5128 12 6 0.0450 -4.7636 1.0303 13 6 1.1612 -4.8079 0.2097 14 6 1.8144 -3.6466 -0.1357 15 6 3.0281 -3.6980 -1.0275 16 6 4.2738 -3.7214 -0.1797 17 8 4.1849 -3.6982 1.0297 18 7 5.4868 -3.7671 -0.7654 19 6 5.6161 -3.6848 -2.2266 20 6 6.5966 -2.5523 -2.5674 21 6 7.9176 -2.7907 -1.8323 22 6 7.6725 -2.7770 -0.3217 23 6 6.7046 -3.9064 0.0449 24 1 7.1721 -4.8694 -0.1607 25 6 6.3512 -3.8181 1.5071 26 7 6.4328 -4.8142 2.4072 27 6 6.0326 -4.2966 3.5437 28 8 5.7169 -3.0210 3.2998 29 7 5.9063 -2.7674 2.1288 30 1 -0.4850 0.8401 0.0004 31 1 -0.1573 -1.4360 1.5577 32 1 -1.2936 -3.5297 2.1557 33 1 -0.4611 -5.6797 1.2965 34 1 1.5198 -5.7571 -0.1601 35 1 2.9899 -4.5977 -1.6418 36 1 3.0433 -2.8187 -1.6715 37 1 5.9966 -4.6301 -2.6136 38 1 4.6425 -3.4722 -2.6682 39 1 6.1747 -1.5967 -2.2565 40 1 6.7759 -2.5384 -3.6424 41 1 8.6252 -2.0036 -2.0926 42 1 8.3264 -3.7578 -2.1250 43 1 7.2404 -1.8191 -0.0320 44 1 8.6174 -2.9235 0.2015 45 1 5.9667 -4.8051 4.4942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776941114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = 50.933552 kcal Electronic energy + Delta-G solvation = -31119.872104 eV Core-core repulsion = 27105.168404 eV Total energy + Delta-G solvation = -4014.703700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.30986 -41.43287 -39.52026 -38.19340 -36.56727 -35.54383 -34.28610 -33.65865 -33.02234 -31.60124 -31.36970 -28.74627 -27.12856 -26.40339 -25.11233 -24.92372 -23.17718 -22.84397 -22.23820 -21.27977 -19.95297 -19.09976 -19.03857 -18.64885 -17.65107 -17.39031 -17.01599 -16.46956 -16.32161 -16.07361 -15.55599 -15.46852 -15.41208 -15.04585 -14.70762 -14.44299 -14.37229 -14.11622 -13.68747 -13.43083 -13.39991 -13.24223 -12.93342 -12.81570 -12.75233 -12.61953 -12.52887 -12.40817 -12.18706 -12.00025 -11.86141 -11.72598 -11.66852 -11.40179 -11.36783 -11.22776 -11.05849 -9.89093 -9.64447 -9.26382 -9.18352 -8.64156 -6.32166 0.59154 0.94755 1.08439 1.29081 1.40032 1.40869 1.48249 1.75378 2.15096 2.18654 2.43106 2.73883 2.81163 3.40023 3.65511 3.75412 3.89899 3.95429 4.07350 4.08476 4.22882 4.28990 4.35779 4.44211 4.53756 4.56804 4.65493 4.67549 4.75075 4.83945 4.85624 4.97305 4.98446 5.05276 5.12435 5.15410 5.18793 5.25490 5.32899 5.43316 5.51049 5.55855 5.73220 6.00023 6.12643 6.17913 6.38491 6.39935 6.70381 6.96075 7.07649 7.30889 7.49597 8.32178 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.005216 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.786419 B = 5367.173405 C = 6117.785112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.039 3.961 3 Si 0.964 3.036 4 H -0.252 1.252 5 H -0.264 1.264 6 H -0.276 1.276 7 C -0.474 4.474 8 H 0.062 0.938 9 C 0.099 3.901 10 C -0.192 4.192 11 C -0.116 4.116 12 C -0.241 4.241 13 C -0.091 4.091 14 C -0.186 4.186 15 C -0.061 4.061 16 C 0.515 3.485 17 O -0.553 6.553 18 N -0.616 5.616 19 C 0.102 3.898 20 C -0.136 4.136 21 C -0.107 4.107 22 C -0.121 4.121 23 C 0.235 3.765 24 H 0.116 0.884 25 C 0.181 3.819 26 N -0.512 5.512 27 C 0.158 3.842 28 O 0.066 5.934 29 N -0.382 5.382 30 H 0.286 0.714 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.082 -6.519 -4.190 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.201 1.201 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.097 3.903 10 C -0.212 4.212 11 C -0.134 4.134 12 C -0.260 4.260 13 C -0.109 4.109 14 C -0.188 4.188 15 C -0.101 4.101 16 C 0.305 3.695 17 O -0.429 6.429 18 N -0.353 5.353 19 C -0.019 4.019 20 C -0.174 4.174 21 C -0.145 4.145 22 C -0.160 4.160 23 C 0.130 3.870 24 H 0.134 0.866 25 C -0.092 4.092 26 N -0.247 5.247 27 C -0.081 4.081 28 O 0.007 5.993 29 N -0.091 5.091 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges 15.814 -5.896 -4.269 17.409 hybrid contribution -0.478 0.852 0.799 1.262 sum 15.336 -5.043 -3.469 16.513 Atomic orbital electron populations 1.69869 1.08599 1.30180 1.36358 1.26575 0.95380 1.03899 0.91666 0.85476 0.78838 0.77246 0.79857 1.17606 1.18866 1.20054 1.19483 0.96664 0.92035 1.42224 0.91991 1.17679 0.91295 0.92638 0.88669 1.21280 1.00475 0.96798 1.02620 1.20929 0.99169 0.93309 1.00003 1.20678 1.01431 0.96694 1.07227 1.20674 0.95775 0.96414 0.98022 1.19497 1.00160 0.93404 1.05707 1.20242 0.89199 1.03761 0.96856 1.21202 0.85228 0.74342 0.88768 1.90648 1.86061 1.49677 1.16487 1.48351 1.04001 1.74266 1.08674 1.22207 1.01986 1.00832 0.76908 1.22040 0.95389 0.97506 1.02464 1.21497 0.97366 1.04263 0.91349 1.21927 0.98179 0.96318 0.99563 1.19455 0.85939 1.01712 0.79864 0.86621 1.25355 0.98638 0.85338 0.99844 1.71621 1.23202 1.29610 1.00268 1.31169 0.93118 0.82288 1.01549 1.85188 1.61717 1.31152 1.21242 1.74496 1.16726 1.26609 0.91259 0.90309 0.88639 0.87674 0.86767 0.87061 0.87475 0.89074 0.87979 0.89111 0.93782 0.87268 0.89705 0.88945 0.93815 0.89320 0.68124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.85 10.95 21.83 0.24 -44.61 16 2 C 0.04 2.09 5.16 85.26 0.44 2.53 16 3 Si 0.96 41.26 29.59 68.60 2.03 43.28 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.47 -26.69 8.15 23.46 0.19 -26.50 16 8 H 0.06 3.50 6.66 -2.91 -0.02 3.48 16 9 C 0.10 5.62 5.57 -21.29 -0.12 5.50 16 10 C -0.19 -10.93 8.69 22.73 0.20 -10.73 16 11 C -0.12 -5.85 10.02 22.22 0.22 -5.62 16 12 C -0.24 -11.27 10.05 22.46 0.23 -11.04 16 13 C -0.09 -4.22 9.66 22.22 0.21 -4.00 16 14 C -0.19 -9.23 4.43 -19.40 -0.09 -9.31 16 15 C -0.06 -2.45 3.58 29.10 0.10 -2.34 16 16 C 0.51 20.89 7.25 87.66 0.64 21.52 16 17 O -0.55 -26.95 11.43 6.44 0.07 -26.88 16 18 N -0.62 -18.81 2.97 -798.33 -2.37 -21.17 16 19 C 0.10 2.09 6.36 86.51 0.55 2.64 16 20 C -0.14 -2.39 6.10 30.82 0.19 -2.20 16 21 C -0.11 -1.66 5.88 30.62 0.18 -1.48 16 22 C -0.12 -2.80 5.34 30.67 0.16 -2.64 16 23 C 0.23 6.67 3.42 44.23 0.15 6.82 16 24 H 0.12 2.76 8.14 -2.38 -0.02 2.75 16 25 C 0.18 6.44 4.46 138.46 0.62 7.06 16 26 N -0.51 -16.89 11.55 -315.38 -3.64 -20.54 16 27 C 0.16 4.42 13.39 130.52 1.75 6.17 16 28 O 0.07 2.41 11.26 84.25 0.95 3.35 16 29 N -0.38 -15.69 10.02 -60.40 -0.60 -16.29 16 30 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 31 H 0.10 5.69 6.19 -2.91 -0.02 5.67 16 32 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 33 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 34 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.11 3.48 8.02 -2.38 -0.02 3.46 16 36 H 0.09 3.69 6.39 -2.39 -0.02 3.68 16 37 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.09 1.93 5.96 -2.39 -0.01 1.91 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.04 1.31 8.06 -2.39 -0.02 1.29 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.30 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -79.81 365.39 3.32 -76.49 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 1.02 Total: 29.98 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 5.63 Total: -23.61 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -6.38 Total: -102.62 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 1.02 Total: -23.53 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -79.81 3.32 -76.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776941114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.423 kcal (2) G-P(sol) polarization free energy of solvation -79.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds