Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86806 * 120.00131 * 2 1 4 4 H 1.48504 * 109.46946 * 270.00458 * 3 2 1 5 5 H 1.48497 * 109.46765 * 30.00012 * 3 2 1 6 6 H 1.48501 * 109.47197 * 150.00208 * 3 2 1 7 7 C 1.38651 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00201 * 359.97438 * 7 2 1 9 9 O 1.34842 * 120.00062 * 179.97438 * 7 2 1 10 10 C 1.35750 * 116.99826 * 185.40219 * 9 7 2 11 11 C 1.38958 * 120.03252 * 5.87707 * 10 9 7 12 12 C 1.38131 * 120.06818 * 180.02562 * 11 10 9 13 13 C 1.38198 * 120.13685 * 0.02562 * 12 11 10 14 14 C 1.38916 * 120.07092 * 0.02562 * 13 12 11 15 15 N 1.39920 * 120.03786 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00344 * 213.75489 * 15 14 13 17 17 O 1.21287 * 120.00131 * 5.20557 * 16 15 14 18 18 C 1.50707 * 120.00312 * 185.20585 * 16 15 14 19 19 C 1.50694 * 109.46921 * 179.97438 * 18 16 15 20 20 N 1.31067 * 125.96335 * 269.68826 * 19 18 16 21 21 N 1.40294 * 108.27030 * 179.91789 * 20 19 18 22 22 H 0.97004 * 126.08842 * 180.09999 * 21 20 19 23 23 C 1.34318 * 107.81935 * 0.30656 * 21 20 19 24 24 C 1.35748 * 107.84569 * 359.86698 * 23 21 20 25 25 C 1.50840 * 124.11693 * 179.82783 * 24 23 21 26 26 C 1.53366 * 108.37622 * 343.46830 * 25 24 23 27 27 C 1.53107 * 109.51173 * 49.93869 * 26 25 24 28 28 C 1.50831 * 128.03738 * 179.90862 * 23 21 20 29 29 C 1.38736 * 120.03195 * 185.92296 * 10 9 7 30 30 H 0.97000 * 120.00048 * 359.97438 * 1 2 3 31 31 H 1.07992 * 119.96381 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.92709 * 179.97438 * 12 11 10 33 33 H 1.08006 * 119.96188 * 179.97438 * 13 12 11 34 34 H 0.97003 * 119.99784 * 33.75853 * 15 14 13 35 35 H 1.09004 * 109.46631 * 300.00249 * 18 16 15 36 36 H 1.09002 * 109.46489 * 59.99975 * 18 16 15 37 37 H 1.09000 * 109.68097 * 103.19535 * 25 24 23 38 38 H 1.08998 * 109.68739 * 223.75270 * 25 24 23 39 39 H 1.09000 * 109.47027 * 289.92304 * 26 25 24 40 40 H 1.09005 * 109.46417 * 169.94852 * 26 25 24 41 41 H 1.09007 * 109.46465 * 169.70858 * 27 26 25 42 42 H 1.09002 * 109.46840 * 49.73115 * 27 26 25 43 43 H 1.09004 * 109.67893 * 283.13714 * 28 23 21 44 44 H 1.08996 * 109.67877 * 43.68685 * 28 23 21 45 45 H 1.07992 * 120.06598 * 0.25595 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4048 -0.1154 11 6 3.2229 -3.5510 -0.3475 12 6 3.8491 -4.7767 -0.4635 13 6 5.2233 -4.8674 -0.3487 14 6 5.9792 -3.7254 -0.1156 15 7 7.3704 -3.8181 0.0010 16 6 8.0329 -2.9951 0.8379 17 8 7.4167 -2.2393 1.5591 18 6 9.5393 -3.0138 0.8774 19 6 10.0278 -2.0075 1.8873 20 7 10.3118 -0.7509 1.6463 21 7 10.7293 -0.1564 2.8465 22 1 10.9999 0.7679 2.9625 23 6 10.6919 -1.0962 3.8055 24 6 10.2620 -2.2522 3.2385 25 6 10.0884 -3.5491 3.9889 26 6 10.8493 -3.4452 5.3164 27 6 10.4633 -2.1449 6.0267 28 6 11.0498 -0.9509 5.2635 29 6 5.3532 -2.4925 0.0002 30 1 -0.4850 0.8400 0.0004 31 1 2.1488 -3.4833 -0.4373 32 1 3.2635 -5.6661 -0.6435 33 1 5.7100 -5.8273 -0.4394 34 1 7.8582 -4.4747 -0.5204 35 1 9.8830 -4.0089 1.1599 36 1 9.9317 -2.7597 -0.1073 37 1 9.0301 -3.7211 4.1847 38 1 10.4914 -4.3719 3.3983 39 1 11.9218 -3.4481 5.1217 40 1 10.5930 -4.2947 5.9495 41 1 10.8573 -2.1554 7.0430 42 1 9.3773 -2.0573 6.0591 43 1 12.1340 -0.9400 5.3760 44 1 10.6304 -0.0238 5.6538 45 1 5.9382 -1.6038 0.1854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777180393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = 28.063532 kcal Electronic energy + Delta-G solvation = -28724.998787 eV Core-core repulsion = 24709.303368 eV Total energy + Delta-G solvation = -4015.695418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74103 -40.09808 -38.69795 -36.76899 -36.59897 -34.10105 -33.66797 -32.32989 -30.63976 -29.70173 -29.50316 -28.98951 -27.74978 -25.16523 -23.77568 -22.84963 -22.28175 -21.48846 -20.63096 -19.65611 -18.91688 -18.03218 -17.71782 -17.59645 -16.90861 -15.62581 -15.55715 -15.32908 -15.15194 -14.50023 -14.38026 -14.19219 -14.11514 -13.91019 -13.72568 -13.61039 -13.46580 -13.27399 -12.99414 -12.83356 -12.36110 -12.25094 -12.18200 -12.10529 -11.58643 -11.19354 -11.14258 -11.11017 -10.95431 -10.83926 -10.79010 -10.56234 -10.18385 -9.86947 -9.72253 -9.43071 -9.21395 -8.81897 -8.37272 -7.75008 -7.27366 -6.37025 -4.03030 1.73703 1.95158 2.27088 2.49269 2.67341 2.86945 3.27039 3.30672 3.37203 3.49522 4.26273 4.30342 4.39207 4.51655 4.54533 4.58275 4.74944 4.85929 4.93838 5.02698 5.10275 5.14348 5.18979 5.22653 5.29434 5.39843 5.44371 5.59862 5.66383 5.75110 5.75934 5.77924 5.92528 6.08001 6.11347 6.14784 6.16427 6.30620 6.49878 6.57331 6.84535 6.96894 7.16121 7.17770 7.36682 7.57714 7.62888 7.65526 7.84956 8.07818 8.34368 8.98914 9.62788 10.70581 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002889 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.644741 B = 9689.885725 C =10976.889200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.387 4.387 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.174 3.826 11 C -0.232 4.232 12 C -0.060 4.060 13 C -0.227 4.227 14 C 0.179 3.821 15 N -0.671 5.671 16 C 0.511 3.489 17 O -0.498 6.498 18 C -0.059 4.059 19 C 0.104 3.896 20 N -0.282 5.282 21 N -0.467 5.467 22 H 0.437 0.563 23 C 0.084 3.916 24 C -0.221 4.221 25 C -0.043 4.043 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.056 4.056 29 C -0.188 4.188 30 H 0.279 0.721 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.407 0.593 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.507 -8.636 7.389 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.121 3.879 11 C -0.252 4.252 12 C -0.079 4.079 13 C -0.248 4.248 14 C 0.085 3.915 15 N -0.317 5.317 16 C 0.296 3.704 17 O -0.370 6.370 18 C -0.101 4.101 19 C -0.063 4.063 20 N -0.105 5.105 21 N -0.174 5.174 22 H 0.281 0.719 23 C -0.045 4.045 24 C -0.232 4.232 25 C -0.081 4.081 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.095 4.095 29 C -0.209 4.209 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.242 0.758 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 25.046 -6.759 7.067 26.888 hybrid contribution 0.389 0.340 0.273 0.584 sum 25.435 -6.419 7.340 27.240 Atomic orbital electron populations 1.69643 1.05525 1.28438 1.48211 1.24439 0.94997 0.98774 0.95658 0.86228 0.80555 0.81504 0.79003 1.19868 1.20743 1.18216 1.20779 0.76869 0.96634 1.51969 0.87551 1.83605 1.22574 1.25628 1.80116 1.18865 0.91037 0.85709 0.92299 1.21300 1.01298 0.92298 1.10292 1.20563 0.93428 0.96731 0.97167 1.20333 0.93983 0.95822 1.14700 1.17122 0.81428 0.93175 0.99740 1.43378 1.06094 1.38325 1.43929 1.20450 0.89435 0.80640 0.79848 1.90819 1.68995 1.37782 1.39449 1.19956 0.92315 0.98493 0.99363 1.21103 0.98995 0.92338 0.93837 1.77437 1.21082 1.08186 1.03758 1.45863 1.54000 1.11634 1.05920 0.71926 1.20866 1.01433 0.89631 0.92591 1.19654 1.13504 0.96776 0.93267 1.20004 1.00663 0.93011 0.94455 1.21585 1.00241 0.97398 0.96288 1.21558 1.01770 0.93624 0.98392 1.20351 1.01349 1.00225 0.87554 1.20021 0.92370 0.97057 1.11490 0.91094 0.84847 0.86744 0.87108 0.75832 0.86866 0.87122 0.90986 0.91284 0.91834 0.91373 0.91008 0.91051 0.89891 0.90229 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 13.96 55.48 0.77 -25.32 16 2 C 0.06 1.88 5.49 -17.52 -0.10 1.78 16 3 Si 0.90 22.85 28.62 -169.99 -4.86 17.98 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.39 -11.34 9.90 30.88 0.31 -11.03 16 8 H 0.11 3.14 5.53 -52.49 -0.29 2.85 16 9 O -0.21 -6.04 8.58 0.01 0.00 -6.04 16 10 C 0.17 4.30 6.64 -39.13 -0.26 4.04 16 11 C -0.23 -5.16 9.13 -39.35 -0.36 -5.52 16 12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.48 16 13 C -0.23 -3.76 9.96 -39.34 -0.39 -4.15 16 14 C 0.18 3.22 6.27 -83.72 -0.52 2.70 16 15 N -0.67 -9.11 5.34 -9.88 -0.05 -9.17 16 16 C 0.51 7.64 7.56 -10.98 -0.08 7.56 16 17 O -0.50 -10.18 13.74 5.55 0.08 -10.10 16 18 C -0.06 -0.63 6.13 -29.03 -0.18 -0.81 16 19 C 0.10 1.39 5.71 -82.52 -0.47 0.92 16 20 N -0.28 -4.13 12.71 33.59 0.43 -3.70 16 21 N -0.47 -5.43 7.34 33.48 0.25 -5.18 16 22 H 0.44 3.65 8.96 -182.45 -1.64 2.02 16 23 C 0.08 0.92 7.08 -82.33 -0.58 0.33 16 24 C -0.22 -2.66 5.91 -105.05 -0.62 -3.28 16 25 C -0.04 -0.41 6.06 -27.63 -0.17 -0.58 16 26 C -0.12 -0.84 5.90 -26.49 -0.16 -1.00 16 27 C -0.12 -0.82 5.90 -26.49 -0.16 -0.98 16 28 C -0.06 -0.40 6.30 -27.63 -0.17 -0.58 16 29 C -0.19 -4.22 8.61 -39.21 -0.34 -4.55 16 30 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.13 3.08 5.71 -52.49 -0.30 2.78 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.41 3.61 8.82 -40.82 -0.36 3.25 16 35 H 0.11 0.78 7.87 -51.93 -0.41 0.37 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.54 7.95 -51.93 -0.41 0.12 16 39 H 0.06 0.42 8.11 -51.93 -0.42 -0.01 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 42 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.13 3.06 6.43 -52.49 -0.34 2.73 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -37.26 374.97 -9.50 -46.76 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.10 Total: 5.75 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -4.65 Total: -16.63 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 1.39 Total: -43.37 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.08 Total: -16.14 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.86 Total: 17.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.26 -9.50 -46.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777180393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.820 kcal (2) G-P(sol) polarization free energy of solvation -37.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds