Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86806 * 120.00131 * 2 1 4 4 H 1.48504 * 109.46946 * 270.00458 * 3 2 1 5 5 H 1.48497 * 109.46765 * 30.00012 * 3 2 1 6 6 H 1.48501 * 109.47197 * 150.00208 * 3 2 1 7 7 C 1.38651 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00201 * 359.97438 * 7 2 1 9 9 O 1.34842 * 120.00062 * 179.97438 * 7 2 1 10 10 C 1.35750 * 116.99826 * 185.40219 * 9 7 2 11 11 C 1.38958 * 120.03252 * 5.87707 * 10 9 7 12 12 C 1.38131 * 120.06818 * 180.02562 * 11 10 9 13 13 C 1.38198 * 120.13685 * 0.02562 * 12 11 10 14 14 C 1.38916 * 120.07092 * 0.02562 * 13 12 11 15 15 N 1.39920 * 120.03786 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00344 * 213.75489 * 15 14 13 17 17 O 1.21287 * 120.00131 * 5.20557 * 16 15 14 18 18 C 1.50707 * 120.00312 * 185.20585 * 16 15 14 19 19 C 1.50694 * 109.46921 * 179.97438 * 18 16 15 20 20 N 1.31067 * 125.96335 * 269.68826 * 19 18 16 21 21 N 1.40294 * 108.27030 * 179.91789 * 20 19 18 22 22 H 0.97004 * 126.08842 * 180.09999 * 21 20 19 23 23 C 1.34318 * 107.81935 * 0.30656 * 21 20 19 24 24 C 1.35748 * 107.84569 * 359.86698 * 23 21 20 25 25 C 1.50840 * 124.11693 * 179.82783 * 24 23 21 26 26 C 1.53366 * 108.37622 * 343.46830 * 25 24 23 27 27 C 1.53107 * 109.51173 * 49.93869 * 26 25 24 28 28 C 1.50831 * 128.03738 * 179.90862 * 23 21 20 29 29 C 1.38736 * 120.03195 * 185.92296 * 10 9 7 30 30 H 0.97000 * 120.00048 * 359.97438 * 1 2 3 31 31 H 1.07992 * 119.96381 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.92709 * 179.97438 * 12 11 10 33 33 H 1.08006 * 119.96188 * 179.97438 * 13 12 11 34 34 H 0.97003 * 119.99784 * 33.75853 * 15 14 13 35 35 H 1.09004 * 109.46631 * 300.00249 * 18 16 15 36 36 H 1.09002 * 109.46489 * 59.99975 * 18 16 15 37 37 H 1.09000 * 109.68097 * 103.19535 * 25 24 23 38 38 H 1.08998 * 109.68739 * 223.75270 * 25 24 23 39 39 H 1.09000 * 109.47027 * 289.92304 * 26 25 24 40 40 H 1.09005 * 109.46417 * 169.94852 * 26 25 24 41 41 H 1.09007 * 109.46465 * 169.70858 * 27 26 25 42 42 H 1.09002 * 109.46840 * 49.73115 * 27 26 25 43 43 H 1.09004 * 109.67893 * 283.13714 * 28 23 21 44 44 H 1.08996 * 109.67877 * 43.68685 * 28 23 21 45 45 H 1.07992 * 120.06598 * 0.25595 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4048 -0.1154 11 6 3.2229 -3.5510 -0.3475 12 6 3.8491 -4.7767 -0.4635 13 6 5.2233 -4.8674 -0.3487 14 6 5.9792 -3.7254 -0.1156 15 7 7.3704 -3.8181 0.0010 16 6 8.0329 -2.9951 0.8379 17 8 7.4167 -2.2393 1.5591 18 6 9.5393 -3.0138 0.8774 19 6 10.0278 -2.0075 1.8873 20 7 10.3118 -0.7509 1.6463 21 7 10.7293 -0.1564 2.8465 22 1 10.9999 0.7679 2.9625 23 6 10.6919 -1.0962 3.8055 24 6 10.2620 -2.2522 3.2385 25 6 10.0884 -3.5491 3.9889 26 6 10.8493 -3.4452 5.3164 27 6 10.4633 -2.1449 6.0267 28 6 11.0498 -0.9509 5.2635 29 6 5.3532 -2.4925 0.0002 30 1 -0.4850 0.8400 0.0004 31 1 2.1488 -3.4833 -0.4373 32 1 3.2635 -5.6661 -0.6435 33 1 5.7100 -5.8273 -0.4394 34 1 7.8582 -4.4747 -0.5204 35 1 9.8830 -4.0089 1.1599 36 1 9.9317 -2.7597 -0.1073 37 1 9.0301 -3.7211 4.1847 38 1 10.4914 -4.3719 3.3983 39 1 11.9218 -3.4481 5.1217 40 1 10.5930 -4.2947 5.9495 41 1 10.8573 -2.1554 7.0430 42 1 9.3773 -2.0573 6.0591 43 1 12.1340 -0.9400 5.3760 44 1 10.6304 -0.0238 5.6538 45 1 5.9382 -1.6038 0.1854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777180393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = 1.564275 kcal Electronic energy + Delta-G solvation = -28726.147881 eV Core-core repulsion = 24709.303368 eV Total energy + Delta-G solvation = -4016.844512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60189 -41.50125 -40.39840 -38.32142 -37.36943 -35.54166 -34.56918 -34.46752 -31.66319 -31.10744 -30.44757 -30.12249 -28.90829 -27.24636 -24.44785 -24.29810 -23.12681 -22.94285 -22.02523 -20.70080 -19.88266 -19.66921 -19.39995 -18.49669 -18.17597 -17.18568 -16.93615 -16.60106 -16.37203 -16.11310 -15.73472 -15.52213 -15.34455 -14.97232 -14.83297 -14.57048 -14.48585 -14.33490 -14.28653 -14.16309 -13.97200 -13.83744 -13.33165 -12.98136 -12.93755 -12.82974 -12.74539 -12.50484 -12.08435 -11.79229 -11.70203 -11.54253 -11.45422 -11.38441 -11.31937 -10.94012 -10.89164 -10.30047 -9.39961 -9.22060 -8.92530 -8.54822 -6.26096 0.37669 0.63845 0.86248 1.22565 1.26238 1.44647 1.55299 1.62956 1.88228 2.22585 2.25174 2.73936 3.07131 3.11088 3.48215 3.66687 3.84421 3.95976 4.02943 4.09619 4.16160 4.32056 4.34165 4.37121 4.39273 4.51530 4.61902 4.64561 4.65509 4.70382 4.78460 4.80942 4.93225 5.02982 5.08476 5.20763 5.30713 5.34518 5.37826 5.41801 5.43274 5.49846 5.67151 5.71247 5.75754 5.89108 6.21356 6.41855 6.49835 6.68723 6.80464 7.21309 7.57685 8.56998 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002889 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.644741 B = 9689.885725 C =10976.889200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.280 1.280 7 C -0.397 4.397 8 H 0.088 0.912 9 O -0.252 6.252 10 C 0.133 3.867 11 C -0.249 4.249 12 C -0.051 4.051 13 C -0.192 4.192 14 C 0.188 3.812 15 N -0.652 5.652 16 C 0.510 3.490 17 O -0.559 6.559 18 C -0.050 4.050 19 C 0.085 3.915 20 N -0.329 5.329 21 N -0.469 5.469 22 H 0.446 0.554 23 C 0.083 3.917 24 C -0.245 4.245 25 C -0.043 4.043 26 C -0.114 4.114 27 C -0.117 4.117 28 C -0.054 4.054 29 C -0.206 4.206 30 H 0.285 0.715 31 H 0.113 0.887 32 H 0.158 0.842 33 H 0.171 0.829 34 H 0.435 0.565 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.026 -11.627 7.660 32.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.205 1.205 7 C -0.473 4.473 8 H 0.106 0.894 9 O -0.160 6.160 10 C 0.084 3.916 11 C -0.269 4.269 12 C -0.070 4.070 13 C -0.212 4.212 14 C 0.093 3.907 15 N -0.300 5.300 16 C 0.298 3.702 17 O -0.435 6.435 18 C -0.091 4.091 19 C -0.080 4.080 20 N -0.153 5.153 21 N -0.177 5.177 22 H 0.292 0.708 23 C -0.047 4.047 24 C -0.256 4.256 25 C -0.081 4.081 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.093 4.093 29 C -0.228 4.228 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.175 0.825 33 H 0.188 0.812 34 H 0.276 0.724 35 H 0.176 0.824 36 H 0.152 0.848 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.127 0.873 44 H 0.106 0.894 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 28.624 -9.811 7.299 31.126 hybrid contribution -0.470 0.993 0.211 1.119 sum 28.153 -8.818 7.510 30.443 Atomic orbital electron populations 1.69702 1.06453 1.29502 1.50258 1.25134 0.95825 1.01588 0.95740 0.85372 0.78392 0.78468 0.79373 1.18718 1.18413 1.20536 1.20761 0.77841 0.96338 1.52349 0.89445 1.83547 1.21616 1.27753 1.83092 1.19382 0.92203 0.85651 0.94405 1.21354 1.00464 0.93546 1.11510 1.21056 0.94690 0.96196 0.95031 1.20959 0.93173 0.97322 1.09757 1.17279 0.83738 0.92005 0.97699 1.43266 1.04262 1.38725 1.43752 1.21283 0.91177 0.79145 0.78549 1.90817 1.70556 1.40139 1.42031 1.20098 0.88428 1.00303 1.00244 1.21616 0.98795 0.92428 0.95192 1.77334 1.22992 1.09291 1.05688 1.45931 1.53811 1.12365 1.05582 0.70815 1.21529 1.00078 0.89159 0.93923 1.20102 1.13973 0.98290 0.93200 1.20062 0.99723 0.92491 0.95807 1.21588 1.00571 0.97799 0.95185 1.21594 1.00408 0.93686 0.99771 1.20523 1.02952 1.00730 0.85063 1.20049 0.91417 0.98351 1.12960 0.90476 0.86878 0.82472 0.81197 0.72437 0.82371 0.84811 0.93294 0.89306 0.90571 0.90075 0.88558 0.93389 0.87346 0.89445 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.78 13.96 21.61 0.30 -56.48 16 2 C 0.02 0.97 5.49 84.83 0.47 1.44 16 3 Si 0.96 49.40 28.62 68.60 1.96 51.36 16 4 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -15.22 7.11 99.48 0.71 -14.51 16 7 C -0.40 -24.83 9.90 67.92 0.67 -24.16 16 8 H 0.09 5.59 5.53 -2.91 -0.02 5.58 16 9 O -0.25 -15.24 8.58 -22.87 -0.20 -15.44 16 10 C 0.13 6.92 6.64 22.56 0.15 7.07 16 11 C -0.25 -11.30 9.13 22.42 0.20 -11.10 16 12 C -0.05 -1.70 10.03 22.23 0.22 -1.47 16 13 C -0.19 -5.40 9.96 22.42 0.22 -5.17 16 14 C 0.19 6.34 6.27 38.14 0.24 6.57 16 15 N -0.65 -15.54 5.34 -303.55 -1.62 -17.16 16 16 C 0.51 14.51 7.56 87.66 0.66 15.17 16 17 O -0.56 -23.39 13.74 -3.05 -0.04 -23.43 16 18 C -0.05 -0.93 6.13 29.10 0.18 -0.75 16 19 C 0.09 2.21 5.71 42.93 0.24 2.46 16 20 N -0.33 -9.72 12.71 -47.63 -0.61 -10.33 16 21 N -0.47 -10.90 7.34 -47.99 -0.35 -11.25 16 22 H 0.45 7.58 8.96 -213.19 -1.91 5.66 16 23 C 0.08 1.74 7.08 41.64 0.29 2.04 16 24 C -0.24 -5.63 5.91 -20.14 -0.12 -5.75 16 25 C -0.04 -0.73 6.06 30.01 0.18 -0.55 16 26 C -0.11 -1.34 5.90 30.75 0.18 -1.16 16 27 C -0.12 -1.44 5.90 30.75 0.18 -1.26 16 28 C -0.05 -0.68 6.30 30.01 0.19 -0.49 16 29 C -0.21 -9.51 8.61 22.51 0.19 -9.32 16 30 H 0.29 16.16 8.31 -92.71 -0.77 15.39 16 31 H 0.11 5.55 5.71 -2.91 -0.02 5.53 16 32 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.43 5.38 8.82 -92.71 -0.82 4.56 16 35 H 0.16 1.45 7.87 -2.38 -0.02 1.43 16 36 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.10 7.95 -2.39 -0.02 1.08 16 39 H 0.08 0.73 8.11 -2.39 -0.02 0.71 16 40 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.05 0.81 8.11 -2.39 -0.02 0.80 16 43 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 5.15 6.43 -2.91 -0.02 5.13 16 Total: -1.00 -90.67 374.97 2.15 -88.52 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -1.67 Total: 20.65 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 4.37 Total: -26.44 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -2.28 Total: -95.22 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.24 Total: -38.87 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.96 Total: 51.36 kcal Total: -90.67 2.15 -88.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777180393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.084 kcal (2) G-P(sol) polarization free energy of solvation -90.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds