Wall clock time and date at job start Sat Apr 11 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 119.99888 * 2 1 4 4 H 1.48508 * 109.46904 * 270.00445 * 3 2 1 5 5 H 1.48497 * 109.47017 * 30.00085 * 3 2 1 6 6 H 1.48493 * 109.47451 * 150.00353 * 3 2 1 7 7 C 1.38647 * 120.00597 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99292 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00745 * 179.97438 * 7 2 1 10 10 C 1.35754 * 117.00418 * 185.05222 * 9 7 2 11 11 C 1.38878 * 120.06608 * 354.47030 * 10 9 7 12 12 C 1.38100 * 119.92812 * 179.97438 * 11 10 9 13 13 C 1.38300 * 120.07119 * 359.96919 * 12 11 10 14 14 C 1.50695 * 119.93415 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47052 * 90.00237 * 14 13 12 16 16 O 1.21280 * 119.99943 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00043 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00275 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.50802 * 35.09626 * 18 17 15 20 20 C 1.53143 * 109.50802 * 155.23283 * 18 17 15 21 21 C 1.53251 * 109.50797 * 189.39504 * 20 18 17 22 22 N 1.46480 * 108.80354 * 309.65294 * 21 20 18 23 23 C 1.36308 * 127.77448 * 197.15233 * 22 21 20 24 24 C 1.34860 * 106.68448 * 179.90253 * 23 22 21 25 25 N 1.34284 * 108.07291 * 0.02562 * 24 23 22 26 26 C 1.30095 * 109.21165 * 0.02562 * 25 24 23 27 27 C 1.51047 * 127.38949 * 179.97438 * 26 25 24 28 28 C 1.38308 * 120.13466 * 0.28549 * 13 12 11 29 29 C 1.38102 * 120.06990 * 359.48469 * 28 13 12 30 30 H 0.97001 * 120.00585 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.03628 * 359.94532 * 11 10 9 32 32 H 1.07997 * 119.96291 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.47143 * 210.00604 * 14 13 12 34 34 H 1.09004 * 109.47189 * 330.00385 * 14 13 12 35 35 H 0.97007 * 120.00100 * 0.02562 * 17 15 14 36 36 H 1.08992 * 109.47079 * 309.41578 * 20 18 17 37 37 H 1.09000 * 109.46801 * 69.40596 * 20 18 17 38 38 H 1.09000 * 109.61290 * 189.83840 * 21 20 18 39 39 H 1.09010 * 109.55087 * 69.42712 * 21 20 18 40 40 H 1.07997 * 126.66170 * 359.94408 * 23 22 21 41 41 H 1.08006 * 125.95984 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.71785 * 76.30054 * 27 26 25 43 43 H 1.09003 * 109.71372 * 315.65932 * 27 26 25 44 44 H 1.07996 * 119.96324 * 179.72245 * 28 13 12 45 45 H 1.07997 * 120.03353 * 180.26063 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4002 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.6999 7 6 2.0089 -1.2006 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3571 -1.2007 -0.0011 10 6 3.9735 -2.4055 -0.1081 11 6 3.2235 -3.5743 -0.0951 12 6 3.8533 -4.7984 -0.2047 13 6 5.2294 -4.8611 -0.3279 14 6 5.9135 -6.1985 -0.4479 15 6 6.0179 -6.5806 -1.9018 16 8 5.5803 -5.8397 -2.7565 17 7 6.5975 -7.7458 -2.2524 18 6 6.6985 -8.1177 -3.6658 19 1 6.8635 -7.2233 -4.2666 20 6 7.8688 -9.0866 -3.8574 21 6 8.1230 -9.2925 -5.3546 22 7 6.8549 -9.6261 -6.0073 23 6 6.6705 -10.1912 -7.2339 24 6 5.3387 -10.3110 -7.4089 25 7 4.7296 -9.8289 -6.3135 26 6 5.6298 -9.4161 -5.4699 27 6 5.3987 -8.8010 -4.1098 28 6 5.9795 -3.6991 -0.3359 29 6 5.3551 -2.4717 -0.2314 30 1 -0.4851 0.8400 0.0004 31 1 2.1488 -3.5260 0.0011 32 1 3.2707 -5.7076 -0.1943 33 1 6.9123 -6.1357 -0.0160 34 1 5.3339 -6.9522 0.0852 35 1 6.9471 -8.3386 -1.5688 36 1 8.7628 -8.6734 -3.3905 37 1 7.6272 -10.0439 -3.3954 38 1 8.8325 -10.1077 -5.4965 39 1 8.5257 -8.3757 -5.7856 40 1 7.4413 -10.4865 -7.9303 41 1 4.8477 -10.7228 -8.2783 42 1 5.1296 -9.5789 -3.3953 43 1 4.5979 -8.0640 -4.1708 44 1 7.0543 -3.7515 -0.4277 45 1 5.9411 -1.5646 -0.2419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779094837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:50 Heat of formation + Delta-G solvation = 25.156412 kcal Electronic energy + Delta-G solvation = -28071.297482 eV Core-core repulsion = 24055.476002 eV Total energy + Delta-G solvation = -4015.821481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.60040 -40.05675 -39.01369 -37.34877 -36.48885 -34.45212 -32.67387 -32.36207 -31.35872 -30.21124 -30.15446 -28.42082 -26.77557 -25.04524 -24.54045 -22.55873 -22.06730 -21.69185 -20.96582 -20.20235 -19.39192 -17.86221 -17.55466 -17.25083 -16.92142 -16.76414 -15.91603 -15.49467 -14.94112 -14.75285 -14.52535 -14.38003 -14.14812 -14.02149 -13.94762 -13.82274 -13.69795 -13.44214 -13.17853 -12.72873 -12.61626 -12.53375 -12.31808 -12.17176 -11.87416 -11.63648 -11.54064 -11.27604 -10.91888 -10.73459 -10.64989 -10.20196 -10.12802 -9.89227 -9.82396 -9.38789 -9.34596 -8.82684 -8.60575 -8.20616 -7.27926 -6.37935 -4.04329 1.75807 2.15809 2.18938 2.40253 2.64556 2.88272 2.94115 3.24685 3.28963 3.42870 3.91034 3.99231 4.09826 4.26934 4.32406 4.48746 4.53766 4.64328 4.75154 4.82441 4.88385 4.96282 5.09340 5.13791 5.15039 5.18045 5.22682 5.25756 5.39827 5.57797 5.64663 5.68299 5.69189 5.77348 5.97216 6.16388 6.17161 6.35938 6.50310 6.59486 6.82460 6.85766 7.04569 7.24444 7.31271 7.34004 7.65134 7.84252 7.87477 8.07611 8.20265 8.97359 9.59858 10.69753 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.002017 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.870462 B =13881.208270 C =14655.610266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.057 4.057 13 C -0.164 4.164 14 C -0.080 4.080 15 C 0.510 3.490 16 O -0.513 6.513 17 N -0.736 5.736 18 C 0.145 3.855 19 H 0.095 0.905 20 C -0.143 4.143 21 C 0.108 3.892 22 N -0.460 5.460 23 C -0.058 4.058 24 C -0.030 4.030 25 N -0.487 5.487 26 C 0.216 3.784 27 C -0.046 4.046 28 C -0.062 4.062 29 C -0.192 4.192 30 H 0.279 0.721 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.400 0.600 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.511 -22.844 -6.748 31.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.076 4.076 13 C -0.165 4.165 14 C -0.120 4.120 15 C 0.297 3.703 16 O -0.386 6.386 17 N -0.390 5.390 18 C 0.038 3.962 19 H 0.114 0.886 20 C -0.181 4.181 21 C -0.015 4.015 22 N -0.144 5.144 23 C -0.191 4.191 24 C -0.178 4.178 25 N -0.205 5.205 26 C -0.047 4.047 27 C -0.086 4.086 28 C -0.080 4.080 29 C -0.211 4.211 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.192 0.808 41 H 0.187 0.813 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 19.355 -21.828 -7.169 30.041 hybrid contribution 1.177 0.185 -0.111 1.196 sum 20.531 -21.643 -7.280 30.707 Atomic orbital electron populations 1.69644 1.05555 1.28451 1.48118 1.24466 0.95032 0.98820 0.95731 0.86180 0.80289 0.81449 0.78966 1.19887 1.20813 1.18387 1.20774 0.76895 0.96647 1.52089 0.87602 1.83567 1.22627 1.25805 1.80274 1.19126 0.91715 0.85489 0.92667 1.21232 1.01079 0.91808 1.09697 1.20572 0.93253 0.96760 0.96976 1.18682 0.93576 0.92505 1.11713 1.20422 1.02343 0.97147 0.92088 1.21120 0.76785 0.80118 0.92266 1.90779 1.45218 1.50517 1.52079 1.46066 1.63299 1.22498 1.07111 1.20873 0.93237 0.98013 0.84032 0.88646 1.22175 0.99986 1.01038 0.94899 1.21906 0.84127 1.02661 0.92762 1.45435 1.07652 1.46512 1.14833 1.22548 0.99488 1.07638 0.89389 1.22407 0.90630 1.06180 0.98557 1.70087 1.31991 1.16060 1.02398 1.23213 0.79913 1.03591 0.97989 1.20631 0.99521 1.00073 0.88390 1.20389 0.98078 0.91388 0.98167 1.20145 0.91972 0.97740 1.11233 0.91077 0.84943 0.87479 0.88827 0.88716 0.76534 0.88329 0.89918 0.88647 0.89323 0.80822 0.81275 0.89026 0.87869 0.87259 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 13.96 55.48 0.77 -25.10 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 22.10 28.62 -169.99 -4.86 17.23 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.39 -11.19 9.95 30.88 0.31 -10.89 16 8 H 0.11 3.12 5.44 -52.48 -0.29 2.83 16 9 O -0.22 -5.89 8.59 0.04 0.00 -5.89 16 10 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 11 C -0.22 -4.87 9.17 -39.40 -0.36 -5.23 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 13 C -0.16 -2.66 4.38 -104.58 -0.46 -3.12 16 14 C -0.08 -0.87 5.83 -29.04 -0.17 -1.04 16 15 C 0.51 6.09 7.79 -10.99 -0.09 6.01 16 16 O -0.51 -8.92 15.70 5.56 0.09 -8.83 16 17 N -0.74 -5.48 5.08 -53.53 -0.27 -5.75 16 18 C 0.14 1.13 2.48 -67.65 -0.17 0.96 16 19 H 0.10 0.99 7.56 -51.93 -0.39 0.60 16 20 C -0.14 -0.58 5.41 -26.53 -0.14 -0.72 16 21 C 0.11 0.50 6.98 -3.92 -0.03 0.47 16 22 N -0.46 -3.92 3.13 -113.75 -0.36 -4.27 16 23 C -0.06 -0.48 11.64 -16.76 -0.20 -0.67 16 24 C -0.03 -0.32 11.87 -17.68 -0.21 -0.53 16 25 N -0.49 -6.60 11.24 -10.62 -0.12 -6.72 16 26 C 0.22 2.45 7.65 -155.24 -1.19 1.26 16 27 C -0.05 -0.45 5.91 -27.50 -0.16 -0.62 16 28 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 29 C -0.19 -3.90 9.99 -39.40 -0.39 -4.29 16 30 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.13 3.09 5.64 -52.48 -0.30 2.80 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.40 1.58 8.60 -40.82 -0.35 1.23 16 36 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.28 8.12 -51.93 -0.42 -0.14 16 38 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -37.03 379.05 -9.36 -46.40 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.95 Total: 3.23 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -4.38 Total: -16.01 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.03 Total: -41.84 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.09 Total: -14.72 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.03 -9.36 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779094837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.555 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds