Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47270 * 269.99688 * 3 2 1 5 5 H 1.48501 * 109.47281 * 29.99564 * 3 2 1 6 6 H 1.48506 * 109.47571 * 149.99759 * 3 2 1 7 7 C 1.38654 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99629 * 0.02562 * 7 2 1 9 9 O 1.34830 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.35758 * 116.99695 * 185.05873 * 9 7 2 11 11 C 1.38898 * 120.06964 * 354.46523 * 10 9 7 12 12 C 1.38076 * 119.93361 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.06423 * 0.02562 * 12 11 10 14 14 C 1.38271 * 120.14027 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.96659 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47221 * 89.99626 * 15 14 13 17 17 O 1.21278 * 119.99440 * 0.27859 * 16 15 14 18 18 N 1.34774 * 119.99771 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99861 * 180.02562 * 18 16 15 20 20 H 1.09005 * 109.50734 * 35.09240 * 19 18 16 21 21 C 1.53147 * 109.51089 * 155.23239 * 19 18 16 22 22 C 1.53256 * 109.50385 * 189.40403 * 21 19 18 23 23 N 1.46476 * 108.79658 * 309.63868 * 22 21 19 24 24 C 1.36319 * 127.77434 * 197.16431 * 23 22 21 25 25 C 1.34852 * 106.68653 * 179.89957 * 24 23 22 26 26 N 1.34291 * 108.07401 * 0.02562 * 25 24 23 27 27 C 1.30091 * 109.21252 * 0.02562 * 26 25 24 28 28 C 1.51041 * 127.39349 * 179.97438 * 27 26 25 29 29 C 1.38121 * 120.06943 * 0.25003 * 14 13 12 30 30 H 0.96998 * 120.00550 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.03370 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.97019 * 179.97438 * 12 11 10 33 33 H 1.08003 * 119.92889 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.47009 * 329.99818 * 15 14 13 35 35 H 1.09002 * 109.47465 * 209.99797 * 15 14 13 36 36 H 0.97002 * 120.00466 * 0.02562 * 18 16 15 37 37 H 1.08991 * 109.46543 * 309.41992 * 21 19 18 38 38 H 1.09001 * 109.46655 * 69.40641 * 21 19 18 39 39 H 1.09002 * 109.59701 * 189.83835 * 22 21 19 40 40 H 1.08994 * 109.56268 * 69.42631 * 22 21 19 41 41 H 1.08004 * 126.65137 * 359.88580 * 24 23 22 42 42 H 1.08002 * 125.95781 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.71525 * 76.29374 * 28 27 26 44 44 H 1.09008 * 109.74778 * 315.67774 * 28 27 26 45 45 H 1.08001 * 120.03265 * 179.72154 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4468 2.6527 0.6999 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4055 -0.1051 11 6 3.2235 -3.5745 -0.0922 12 6 3.8533 -4.7984 -0.2009 13 6 5.2299 -4.8611 -0.3220 14 6 5.9793 -3.6992 -0.3351 15 6 7.4788 -3.7721 -0.4666 16 6 7.8576 -3.7344 -1.9248 17 8 6.9951 -3.6510 -2.7733 18 7 9.1551 -3.7883 -2.2855 19 6 9.5234 -3.7511 -3.7030 20 1 8.8334 -3.1013 -4.2415 21 6 10.9505 -3.2144 -3.8468 22 6 11.2525 -2.9538 -5.3265 23 7 10.8981 -4.1474 -6.0979 24 6 11.2895 -4.4708 -7.3630 25 6 10.7195 -5.6580 -7.6531 26 7 9.9985 -6.0453 -6.5884 27 6 10.0992 -5.1465 -5.6533 28 6 9.4551 -5.1679 -4.2873 29 6 5.3556 -2.4720 -0.2221 30 1 -0.4851 0.8400 -0.0004 31 1 2.1488 -3.5262 0.0027 32 1 3.2708 -5.7078 -0.1905 33 1 5.7202 -5.8196 -0.4073 34 1 7.8378 -4.7002 -0.0219 35 1 7.9304 -2.9240 0.0481 36 1 9.8451 -3.8517 -1.6067 37 1 11.0468 -2.2841 -3.2870 38 1 11.6556 -3.9481 -3.4560 39 1 12.3142 -2.7404 -5.4508 40 1 10.6640 -2.1052 -5.6752 41 1 11.9313 -3.8888 -8.0079 42 1 10.8246 -6.2023 -8.5800 43 1 9.9923 -5.8596 -3.6383 44 1 8.4144 -5.4797 -4.3757 45 1 5.9419 -1.5651 -0.2279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779098050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = 25.334772 kcal Electronic energy + Delta-G solvation = -28235.506728 eV Core-core repulsion = 24219.692982 eV Total energy + Delta-G solvation = -4015.813746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.60446 -40.09204 -39.01158 -37.33665 -36.48525 -34.46353 -32.71824 -32.35187 -31.82888 -30.17063 -29.43963 -28.48548 -26.95199 -25.16320 -24.67230 -22.65446 -21.83939 -21.63000 -21.01754 -20.28574 -19.41171 -17.73348 -17.54404 -17.18849 -16.93324 -16.64274 -15.82965 -15.57315 -15.15933 -14.94049 -14.53584 -14.40794 -14.19774 -14.04011 -13.95228 -13.87637 -13.66139 -13.40828 -13.16886 -12.72139 -12.57997 -12.45942 -12.31392 -12.14338 -11.88718 -11.66948 -11.53036 -11.29174 -10.82110 -10.74876 -10.73860 -10.21890 -10.13874 -9.89855 -9.87113 -9.39971 -9.35757 -8.83946 -8.61332 -8.12511 -7.32765 -6.37545 -4.04222 1.75466 2.01576 2.31552 2.40378 2.61813 2.86159 2.92668 3.23626 3.27894 3.41472 3.91505 3.99860 4.09737 4.26574 4.31734 4.48573 4.54653 4.64701 4.72107 4.75927 4.84806 4.94637 5.10336 5.12359 5.15242 5.16965 5.19577 5.31827 5.39468 5.55470 5.63006 5.66902 5.70634 5.86810 5.96863 6.14553 6.15841 6.27956 6.49539 6.55376 6.81489 6.85180 7.12251 7.23749 7.27306 7.35300 7.63945 7.84569 7.86158 8.08055 8.16905 8.97933 9.60748 10.70366 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002191 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.924838 B =12778.981600 C =13369.057994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.187 4.187 14 C -0.036 4.036 15 C -0.093 4.093 16 C 0.514 3.486 17 O -0.511 6.511 18 N -0.735 5.735 19 C 0.144 3.856 20 H 0.097 0.903 21 C -0.143 4.143 22 C 0.108 3.892 23 N -0.460 5.460 24 C -0.057 4.057 25 C -0.030 4.030 26 N -0.488 5.488 27 C 0.216 3.784 28 C -0.045 4.045 29 C -0.175 4.175 30 H 0.279 0.721 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.401 0.599 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.877 -7.099 -6.713 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.125 6.125 10 C 0.108 3.892 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.206 4.206 14 C -0.037 4.037 15 C -0.132 4.132 16 C 0.301 3.699 17 O -0.384 6.384 18 N -0.388 5.388 19 C 0.038 3.962 20 H 0.115 0.885 21 C -0.181 4.181 22 C -0.015 4.015 23 N -0.144 5.144 24 C -0.190 4.190 25 C -0.178 4.178 26 N -0.206 5.206 27 C -0.047 4.047 28 C -0.085 4.085 29 C -0.194 4.194 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.235 0.765 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.192 0.808 42 H 0.187 0.813 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 26.684 -7.236 -7.184 28.566 hybrid contribution 1.005 1.388 -0.023 1.714 sum 27.689 -5.848 -7.206 29.203 Atomic orbital electron populations 1.69643 1.05533 1.28389 1.48382 1.24454 0.95019 0.98764 0.95810 0.86186 0.80276 0.81528 0.78915 1.19942 1.20835 1.18426 1.20763 0.76911 0.96616 1.52070 0.87644 1.83565 1.22580 1.25648 1.80713 1.19008 0.91520 0.85564 0.93104 1.21304 1.01134 0.91963 1.09171 1.20747 0.94133 0.96758 0.97766 1.20424 0.93960 0.96511 1.09738 1.18637 0.92162 0.93025 0.99891 1.20587 0.95257 1.04663 0.92725 1.20853 0.81731 0.75509 0.91821 1.90795 1.48582 1.46403 1.52607 1.46008 1.08194 1.77620 1.07008 1.20889 0.95722 0.96267 0.83312 0.88540 1.22178 0.96924 1.03845 0.95168 1.21915 1.02421 0.86356 0.90802 1.45442 1.37594 1.18290 1.13054 1.22559 1.07943 1.00906 0.87569 1.22398 1.00736 0.95778 0.98924 1.70076 1.22228 1.27598 1.00714 1.23197 0.97133 0.86467 0.97939 1.20621 1.02316 0.97812 0.87787 1.19923 0.92013 0.96895 1.10615 0.91121 0.84992 0.87143 0.87672 0.88147 0.88182 0.76457 0.88246 0.89905 0.88607 0.89238 0.80812 0.81280 0.89039 0.87914 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 13.96 55.48 0.77 -25.10 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 22.02 28.62 -169.99 -4.86 17.16 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.39 -11.17 9.95 30.89 0.31 -10.86 16 8 H 0.11 3.10 5.44 -52.48 -0.29 2.82 16 9 O -0.22 -5.93 8.59 0.02 0.00 -5.93 16 10 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 11 C -0.22 -4.84 9.17 -39.40 -0.36 -5.20 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.19 -3.21 9.70 -39.54 -0.38 -3.59 16 14 C -0.04 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.04 5.83 -29.03 -0.17 -1.21 16 16 C 0.51 6.32 7.79 -10.98 -0.09 6.23 16 17 O -0.51 -9.07 15.70 5.56 0.09 -8.98 16 18 N -0.73 -5.64 5.08 -53.52 -0.27 -5.91 16 19 C 0.14 1.16 2.48 -67.64 -0.17 0.99 16 20 H 0.10 1.05 7.56 -51.93 -0.39 0.65 16 21 C -0.14 -0.63 5.41 -26.52 -0.14 -0.77 16 22 C 0.11 0.53 6.98 -3.92 -0.03 0.50 16 23 N -0.46 -3.95 3.13 -113.76 -0.36 -4.31 16 24 C -0.06 -0.47 11.64 -16.76 -0.20 -0.67 16 25 C -0.03 -0.32 11.87 -17.68 -0.21 -0.53 16 26 N -0.49 -6.49 11.24 -10.62 -0.12 -6.61 16 27 C 0.22 2.41 7.65 -155.24 -1.19 1.23 16 28 C -0.05 -0.44 5.91 -27.50 -0.16 -0.60 16 29 C -0.18 -3.54 9.64 -39.40 -0.38 -3.92 16 30 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.13 3.08 5.64 -52.49 -0.30 2.79 16 32 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 34 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.40 1.64 8.60 -40.82 -0.35 1.29 16 37 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.29 8.12 -51.93 -0.42 -0.13 16 39 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.26 8.14 -51.92 -0.42 0.83 16 45 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -37.14 379.05 -9.36 -46.50 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.95 Total: 3.55 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -4.38 Total: -16.07 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.03 Total: -41.93 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.09 Total: -14.91 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.14 -9.36 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779098050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.835 kcal (2) G-P(sol) polarization free energy of solvation -37.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds