Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47270 * 269.99688 * 3 2 1 5 5 H 1.48501 * 109.47281 * 29.99564 * 3 2 1 6 6 H 1.48506 * 109.47571 * 149.99759 * 3 2 1 7 7 C 1.38654 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99629 * 0.02562 * 7 2 1 9 9 O 1.34830 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.35758 * 116.99695 * 185.05873 * 9 7 2 11 11 C 1.38898 * 120.06964 * 354.46523 * 10 9 7 12 12 C 1.38076 * 119.93361 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.06423 * 0.02562 * 12 11 10 14 14 C 1.38271 * 120.14027 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.96659 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47221 * 89.99626 * 15 14 13 17 17 O 1.21278 * 119.99440 * 0.27859 * 16 15 14 18 18 N 1.34774 * 119.99771 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99861 * 180.02562 * 18 16 15 20 20 H 1.09005 * 109.50734 * 35.09240 * 19 18 16 21 21 C 1.53147 * 109.51089 * 155.23239 * 19 18 16 22 22 C 1.53256 * 109.50385 * 189.40403 * 21 19 18 23 23 N 1.46476 * 108.79658 * 309.63868 * 22 21 19 24 24 C 1.36319 * 127.77434 * 197.16431 * 23 22 21 25 25 C 1.34852 * 106.68653 * 179.89957 * 24 23 22 26 26 N 1.34291 * 108.07401 * 0.02562 * 25 24 23 27 27 C 1.30091 * 109.21252 * 0.02562 * 26 25 24 28 28 C 1.51041 * 127.39349 * 179.97438 * 27 26 25 29 29 C 1.38121 * 120.06943 * 0.25003 * 14 13 12 30 30 H 0.96998 * 120.00550 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.03370 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.97019 * 179.97438 * 12 11 10 33 33 H 1.08003 * 119.92889 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.47009 * 329.99818 * 15 14 13 35 35 H 1.09002 * 109.47465 * 209.99797 * 15 14 13 36 36 H 0.97002 * 120.00466 * 0.02562 * 18 16 15 37 37 H 1.08991 * 109.46543 * 309.41992 * 21 19 18 38 38 H 1.09001 * 109.46655 * 69.40641 * 21 19 18 39 39 H 1.09002 * 109.59701 * 189.83835 * 22 21 19 40 40 H 1.08994 * 109.56268 * 69.42631 * 22 21 19 41 41 H 1.08004 * 126.65137 * 359.88580 * 24 23 22 42 42 H 1.08002 * 125.95781 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.71525 * 76.29374 * 28 27 26 44 44 H 1.09008 * 109.74778 * 315.67774 * 28 27 26 45 45 H 1.08001 * 120.03265 * 179.72154 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4468 2.6527 0.6999 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4055 -0.1051 11 6 3.2235 -3.5745 -0.0922 12 6 3.8533 -4.7984 -0.2009 13 6 5.2299 -4.8611 -0.3220 14 6 5.9793 -3.6992 -0.3351 15 6 7.4788 -3.7721 -0.4666 16 6 7.8576 -3.7344 -1.9248 17 8 6.9951 -3.6510 -2.7733 18 7 9.1551 -3.7883 -2.2855 19 6 9.5234 -3.7511 -3.7030 20 1 8.8334 -3.1013 -4.2415 21 6 10.9505 -3.2144 -3.8468 22 6 11.2525 -2.9538 -5.3265 23 7 10.8981 -4.1474 -6.0979 24 6 11.2895 -4.4708 -7.3630 25 6 10.7195 -5.6580 -7.6531 26 7 9.9985 -6.0453 -6.5884 27 6 10.0992 -5.1465 -5.6533 28 6 9.4551 -5.1679 -4.2873 29 6 5.3556 -2.4720 -0.2221 30 1 -0.4851 0.8400 -0.0004 31 1 2.1488 -3.5262 0.0027 32 1 3.2708 -5.7078 -0.1905 33 1 5.7202 -5.8196 -0.4073 34 1 7.8378 -4.7002 -0.0219 35 1 7.9304 -2.9240 0.0481 36 1 9.8451 -3.8517 -1.6067 37 1 11.0468 -2.2841 -3.2870 38 1 11.6556 -3.9481 -3.4560 39 1 12.3142 -2.7404 -5.4508 40 1 10.6640 -2.1052 -5.6752 41 1 11.9313 -3.8888 -8.0079 42 1 10.8246 -6.2023 -8.5800 43 1 9.9923 -5.8596 -3.6383 44 1 8.4144 -5.4797 -4.3757 45 1 5.9419 -1.5651 -0.2279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779098050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = -0.272856 kcal Electronic energy + Delta-G solvation = -28236.617158 eV Core-core repulsion = 24219.692982 eV Total energy + Delta-G solvation = -4016.924176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.27826 -41.21204 -40.54235 -38.50570 -37.71613 -35.18588 -34.48582 -33.73258 -32.89436 -31.08344 -30.73932 -29.35349 -28.09868 -27.15940 -25.28311 -23.56884 -23.17561 -22.55901 -22.17134 -21.39379 -20.11993 -19.64906 -18.89844 -18.18613 -17.74379 -17.42271 -16.86328 -16.78778 -16.47997 -16.14612 -15.78146 -15.64102 -15.29967 -15.18087 -15.05419 -14.78478 -14.64574 -14.60744 -14.37870 -14.14374 -13.93551 -13.84780 -13.13947 -13.05292 -12.98891 -12.74671 -12.51565 -12.43454 -12.35879 -12.31155 -12.13928 -11.91589 -11.31666 -11.01888 -10.95058 -10.87236 -10.56274 -10.19487 -9.65720 -9.31026 -9.05779 -8.50486 -6.23435 0.49449 0.70854 1.08372 1.28979 1.34495 1.50337 1.69657 1.85883 2.07823 2.15484 2.27366 2.78105 3.02686 3.17185 3.37107 3.52872 3.55959 3.77843 3.79286 4.06888 4.09546 4.14108 4.20126 4.30421 4.31877 4.41933 4.47043 4.54955 4.56995 4.64174 4.68287 4.68506 4.73233 4.85109 4.92713 4.97706 5.04646 5.26226 5.31346 5.39520 5.44464 5.65750 5.73615 5.76793 5.83250 5.91847 6.22119 6.25938 6.61377 6.83624 7.13898 7.35059 7.58418 8.61462 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002191 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.924838 B =12778.981600 C =13369.057994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.400 4.400 8 H 0.078 0.922 9 O -0.246 6.246 10 C 0.117 3.883 11 C -0.242 4.242 12 C -0.081 4.081 13 C -0.172 4.172 14 C -0.028 4.028 15 C -0.089 4.089 16 C 0.515 3.485 17 O -0.577 6.577 18 N -0.707 5.707 19 C 0.148 3.852 20 H 0.064 0.936 21 C -0.131 4.131 22 C 0.099 3.901 23 N -0.457 5.457 24 C -0.040 4.040 25 C -0.066 4.066 26 N -0.537 5.537 27 C 0.192 3.808 28 C -0.039 4.039 29 C -0.180 4.180 30 H 0.285 0.715 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.425 0.575 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.213 0.787 42 H 0.182 0.818 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.324 -6.920 -6.234 34.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.095 0.905 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.261 4.261 12 C -0.098 4.098 13 C -0.190 4.190 14 C -0.028 4.028 15 C -0.128 4.128 16 C 0.303 3.697 17 O -0.455 6.455 18 N -0.361 5.361 19 C 0.041 3.959 20 H 0.082 0.918 21 C -0.169 4.169 22 C -0.022 4.022 23 N -0.140 5.140 24 C -0.174 4.174 25 C -0.213 4.213 26 N -0.257 5.257 27 C -0.071 4.071 28 C -0.079 4.079 29 C -0.199 4.199 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.155 0.845 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.263 0.737 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.111 0.889 41 H 0.230 0.770 42 H 0.199 0.801 43 H 0.126 0.874 44 H 0.084 0.916 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 32.219 -7.086 -6.666 33.655 hybrid contribution -0.474 1.020 -0.260 1.155 sum 31.745 -6.066 -6.925 33.053 Atomic orbital electron populations 1.69732 1.06929 1.29587 1.50351 1.25322 0.95947 1.02272 0.95566 0.85189 0.78926 0.77248 0.79148 1.19442 1.18875 1.18367 1.20702 0.78207 0.96076 1.52623 0.90467 1.83500 1.21124 1.27367 1.83412 1.19625 0.93249 0.85084 0.95221 1.21315 1.00106 0.93553 1.11164 1.21110 0.95635 0.96212 0.96891 1.21030 0.93189 0.98633 1.06149 1.19258 0.95673 0.91407 0.96511 1.20722 0.90985 1.08536 0.92560 1.21022 0.82446 0.74609 0.91640 1.90801 1.50652 1.49799 1.54256 1.45714 1.07328 1.75438 1.07652 1.20824 0.97602 0.94733 0.82700 0.91804 1.22167 0.94073 1.05342 0.95332 1.22291 1.04506 0.84817 0.90558 1.45691 1.36491 1.18533 1.13279 1.23142 1.06694 1.00052 0.87520 1.22812 1.01829 0.97478 0.99224 1.69981 1.23839 1.29626 1.02246 1.23327 0.98290 0.87291 0.98220 1.20539 1.00200 0.99203 0.87975 1.20302 0.90490 0.99104 1.10021 0.90581 0.87743 0.84480 0.83445 0.83694 0.84923 0.73661 0.85687 0.88060 0.85229 0.88943 0.77030 0.80116 0.87448 0.91588 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.00 13.96 21.61 0.30 -56.70 16 2 C 0.01 0.41 5.49 84.83 0.47 0.88 16 3 Si 0.97 46.73 28.62 68.60 1.96 48.70 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.40 -24.62 9.95 67.92 0.68 -23.94 16 8 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 9 O -0.25 -14.00 8.59 -22.83 -0.20 -14.19 16 10 C 0.12 5.79 6.65 22.58 0.15 5.94 16 11 C -0.24 -11.42 9.17 22.39 0.21 -11.21 16 12 C -0.08 -2.99 10.04 22.25 0.22 -2.77 16 13 C -0.17 -5.37 9.70 22.30 0.22 -5.15 16 14 C -0.03 -0.86 4.37 -19.88 -0.09 -0.95 16 15 C -0.09 -1.55 5.83 29.10 0.17 -1.38 16 16 C 0.52 11.05 7.79 87.66 0.68 11.73 16 17 O -0.58 -20.06 15.70 -3.02 -0.05 -20.10 16 18 N -0.71 -8.14 5.08 -441.64 -2.25 -10.38 16 19 C 0.15 2.03 2.48 45.18 0.11 2.14 16 20 H 0.06 1.35 7.56 -2.38 -0.02 1.33 16 21 C -0.13 -0.57 5.41 30.73 0.17 -0.41 16 22 C 0.10 0.59 6.98 86.47 0.60 1.19 16 23 N -0.46 -6.81 3.13 -513.82 -1.61 -8.42 16 24 C -0.04 -0.58 11.64 83.22 0.97 0.39 16 25 C -0.07 -1.36 11.87 83.54 0.99 -0.37 16 26 N -0.54 -14.54 11.24 -187.51 -2.11 -16.65 16 27 C 0.19 4.19 7.65 138.23 1.06 5.24 16 28 C -0.04 -0.72 5.91 30.09 0.18 -0.54 16 29 C -0.18 -7.16 9.64 22.39 0.22 -6.94 16 30 H 0.28 16.03 8.31 -92.71 -0.77 15.25 16 31 H 0.10 5.40 5.64 -2.91 -0.02 5.39 16 32 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.15 1.35 8.08 -2.39 -0.02 1.33 16 35 H 0.13 1.58 8.08 -2.39 -0.02 1.56 16 36 H 0.42 1.07 8.60 -92.71 -0.80 0.27 16 37 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.10 0.16 8.12 -2.39 -0.02 0.14 16 39 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.21 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 43 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -91.53 379.05 3.28 -88.24 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.23 Total: 15.67 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 7.00 Total: -26.16 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -5.66 Total: -92.15 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.24 Total: -34.30 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.96 Total: 48.70 kcal Total: -91.53 3.28 -88.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779098050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.972 kcal (2) G-P(sol) polarization free energy of solvation -91.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds