Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48497 * 109.47394 * 270.00097 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00490 * 3 2 1 6 6 H 1.48504 * 109.46781 * 149.99782 * 3 2 1 7 7 C 1.38663 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00282 * 359.97438 * 7 2 1 9 9 O 1.34825 * 119.99447 * 180.02562 * 7 2 1 10 10 C 1.35749 * 116.99765 * 185.05346 * 9 7 2 11 11 C 1.38896 * 120.07171 * 354.46588 * 10 9 7 12 12 C 1.38074 * 119.93641 * 180.02562 * 11 10 9 13 13 C 1.38327 * 120.06758 * 359.97438 * 12 11 10 14 14 C 1.38276 * 120.13812 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.96740 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47645 * 89.99847 * 15 14 13 17 17 O 1.21287 * 119.99456 * 0.02562 * 16 15 14 18 18 N 1.34767 * 120.00646 * 179.97438 * 16 15 14 19 19 C 1.46494 * 120.00487 * 180.02562 * 18 16 15 20 20 H 1.09003 * 109.50941 * 324.99949 * 19 18 16 21 21 C 1.53156 * 109.54926 * 204.88693 * 19 18 16 22 22 C 1.53252 * 109.50162 * 170.57392 * 21 19 18 23 23 N 1.46473 * 108.80350 * 50.36360 * 22 21 19 24 24 C 1.36311 * 127.77849 * 162.83702 * 23 22 21 25 25 C 1.34848 * 106.68643 * 180.02562 * 24 23 22 26 26 N 1.34289 * 108.07636 * 359.97438 * 25 24 23 27 27 C 1.30094 * 109.20873 * 359.96794 * 26 25 24 28 28 C 1.51046 * 127.38900 * 180.02562 * 27 26 25 29 29 C 1.38124 * 120.06946 * 0.27338 * 14 13 12 30 30 H 0.97001 * 119.99292 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.03291 * 359.97240 * 11 10 9 32 32 H 1.07999 * 119.96620 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.93188 * 180.02562 * 13 12 11 34 34 H 1.09007 * 109.47168 * 329.99717 * 15 14 13 35 35 H 1.09005 * 109.47313 * 210.00051 * 15 14 13 36 36 H 0.97003 * 119.99642 * 0.02562 * 18 16 15 37 37 H 1.09005 * 109.46078 * 290.57271 * 21 19 18 38 38 H 1.08997 * 109.46686 * 50.55724 * 21 19 18 39 39 H 1.09006 * 109.57101 * 290.57208 * 22 21 19 40 40 H 1.09001 * 109.59253 * 170.16658 * 22 21 19 41 41 H 1.08002 * 126.65199 * 0.08703 * 24 23 22 42 42 H 1.08001 * 125.96325 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.71417 * 44.33729 * 28 27 26 44 44 H 1.09007 * 109.74824 * 283.72072 * 28 27 26 45 45 H 1.07999 * 120.03714 * 179.70655 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7001 7 6 2.0089 -1.2009 -0.0005 8 1 1.4689 -2.1362 -0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9734 -2.4057 -0.1071 11 6 3.2234 -3.5746 -0.0952 12 6 3.8532 -4.7986 -0.2038 13 6 5.2297 -4.8613 -0.3249 14 6 5.9793 -3.6994 -0.3371 15 6 7.4786 -3.7723 -0.4699 16 6 7.8564 -3.7327 -1.9281 17 8 6.9931 -3.6527 -2.7762 18 7 9.1536 -3.7852 -2.2899 19 6 9.5209 -3.7461 -3.7076 20 1 8.7681 -4.2737 -4.2933 21 6 10.8836 -4.4175 -3.9026 22 6 11.1603 -4.5878 -5.4003 23 7 10.9366 -3.3049 -6.0706 24 6 11.3635 -2.9234 -7.3076 25 6 10.9220 -1.6635 -7.4981 26 7 10.2424 -1.2899 -6.4018 27 6 10.2454 -2.2669 -5.5427 28 6 9.6029 -2.2882 -4.1759 29 6 5.3557 -2.4723 -0.2227 30 1 -0.4849 0.8401 0.0004 31 1 2.1486 -3.5263 -0.0002 32 1 3.2705 -5.7078 -0.1942 33 1 5.7200 -5.8198 -0.4101 34 1 7.8379 -4.7010 -0.0265 35 1 7.9306 -2.9249 0.0457 36 1 9.8441 -3.8488 -1.6116 37 1 11.6613 -3.7966 -3.4579 38 1 10.8792 -5.3951 -3.4204 39 1 10.4861 -5.3383 -5.8132 40 1 12.1937 -4.9017 -5.5476 41 1 11.9421 -3.5157 -8.0010 42 1 11.0863 -1.0602 -8.3787 43 1 8.6009 -1.8631 -4.2339 44 1 10.2072 -1.7112 -3.4758 45 1 5.9421 -1.5654 -0.2275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779098053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 25.718533 kcal Electronic energy + Delta-G solvation = -28298.391888 eV Core-core repulsion = 24282.594783 eV Total energy + Delta-G solvation = -4015.797105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.58685 -40.08888 -39.00415 -37.33091 -36.47898 -34.45582 -32.70843 -32.33371 -31.82152 -30.15986 -29.43394 -28.47216 -26.94699 -25.14658 -24.66515 -22.64728 -21.82582 -21.61786 -21.01876 -20.27439 -19.40190 -17.71201 -17.54949 -17.17664 -16.93587 -16.62515 -15.83204 -15.55373 -15.17077 -14.90132 -14.52842 -14.44709 -14.15892 -14.02795 -13.92411 -13.83375 -13.66732 -13.41638 -13.15441 -12.73560 -12.50725 -12.48806 -12.29664 -12.13403 -11.87945 -11.65729 -11.52339 -11.27945 -10.82025 -10.72765 -10.72304 -10.18260 -10.11514 -9.88578 -9.86421 -9.39795 -9.34477 -8.81964 -8.59057 -8.12105 -7.32027 -6.36080 -4.02730 1.77208 2.01997 2.31713 2.41458 2.61858 2.87346 2.95037 3.26652 3.31847 3.44945 3.91486 4.00058 4.10784 4.29212 4.32945 4.49068 4.54529 4.65089 4.72618 4.77289 4.83347 4.95431 5.09756 5.13046 5.16551 5.18020 5.22360 5.32404 5.41215 5.54835 5.64174 5.70856 5.71864 5.85878 5.98329 6.15172 6.16403 6.28467 6.51861 6.55725 6.82050 6.87247 7.12561 7.23905 7.27441 7.35579 7.64660 7.85503 7.89330 8.09377 8.17060 8.99507 9.62225 10.71731 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.002423 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.377923 B =11554.452059 C =13094.055219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.189 4.189 14 C -0.036 4.036 15 C -0.092 4.092 16 C 0.514 3.486 17 O -0.511 6.511 18 N -0.735 5.735 19 C 0.145 3.855 20 H 0.096 0.904 21 C -0.143 4.143 22 C 0.109 3.891 23 N -0.461 5.461 24 C -0.058 4.058 25 C -0.030 4.030 26 N -0.487 5.487 27 C 0.217 3.783 28 C -0.047 4.047 29 C -0.174 4.174 30 H 0.279 0.721 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.401 0.599 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.568 -12.273 -6.944 30.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.208 4.208 14 C -0.037 4.037 15 C -0.132 4.132 16 C 0.301 3.699 17 O -0.384 6.384 18 N -0.388 5.388 19 C 0.039 3.961 20 H 0.114 0.886 21 C -0.181 4.181 22 C -0.014 4.014 23 N -0.145 5.145 24 C -0.191 4.191 25 C -0.178 4.178 26 N -0.205 5.205 27 C -0.046 4.046 28 C -0.087 4.087 29 C -0.194 4.194 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.235 0.765 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.192 0.808 42 H 0.187 0.813 43 H 0.122 0.878 44 H 0.110 0.890 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 26.437 -11.231 -7.368 29.653 hybrid contribution 0.920 -0.188 -0.085 0.942 sum 27.356 -11.419 -7.453 30.566 Atomic orbital electron populations 1.69654 1.05550 1.28407 1.48334 1.24461 0.95023 0.98799 0.95728 0.86186 0.80273 0.81446 0.79033 1.19831 1.20840 1.18385 1.20760 0.76904 0.96607 1.52122 0.87660 1.83567 1.22586 1.25647 1.80584 1.19012 0.91523 0.85565 0.93043 1.21300 1.01130 0.91964 1.09236 1.20733 0.94118 0.96732 0.97866 1.20400 0.93948 0.96438 1.09995 1.18634 0.92153 0.93028 0.99891 1.20584 0.95277 1.04646 0.92720 1.20853 0.81718 0.75521 0.91827 1.90797 1.48580 1.46397 1.52622 1.46005 1.08164 1.77601 1.07059 1.20865 0.96325 0.95255 0.83660 0.88612 1.22178 0.97644 1.03359 0.94911 1.21900 1.03334 0.83753 0.92445 1.45437 1.41114 1.13617 1.14309 1.22542 1.08500 0.99082 0.88951 1.22405 1.02291 0.94524 0.98532 1.70095 1.20576 1.27820 1.02017 1.23206 0.99201 0.84306 0.97920 1.20629 1.02315 0.97584 0.88192 1.19944 0.92028 0.96943 1.10461 0.91117 0.85001 0.87208 0.87790 0.88230 0.88108 0.76460 0.89888 0.88315 0.89329 0.88646 0.80822 0.81281 0.87791 0.88977 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.96 55.48 0.77 -25.26 16 2 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 3 Si 0.91 22.32 28.62 -169.99 -4.86 17.46 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.39 -11.25 9.95 30.89 0.31 -10.94 16 8 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 9 O -0.22 -5.95 8.59 0.06 0.00 -5.95 16 10 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 11 C -0.22 -4.86 9.17 -39.40 -0.36 -5.22 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.19 -3.21 9.70 -39.53 -0.38 -3.60 16 14 C -0.04 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.04 5.83 -29.04 -0.17 -1.21 16 16 C 0.51 6.32 7.79 -10.99 -0.09 6.24 16 17 O -0.51 -9.08 15.70 5.55 0.09 -8.99 16 18 N -0.73 -5.65 5.08 -53.56 -0.27 -5.92 16 19 C 0.14 1.16 2.47 -67.67 -0.17 1.00 16 20 H 0.10 1.01 7.56 -51.93 -0.39 0.62 16 21 C -0.14 -0.60 5.42 -26.52 -0.14 -0.74 16 22 C 0.11 0.51 6.98 -3.93 -0.03 0.48 16 23 N -0.46 -4.02 3.13 -113.76 -0.36 -4.38 16 24 C -0.06 -0.49 11.64 -16.76 -0.20 -0.69 16 25 C -0.03 -0.32 11.87 -17.68 -0.21 -0.53 16 26 N -0.49 -6.80 11.24 -10.62 -0.12 -6.92 16 27 C 0.22 2.53 7.65 -155.24 -1.19 1.34 16 28 C -0.05 -0.49 5.91 -27.53 -0.16 -0.65 16 29 C -0.17 -3.55 9.65 -39.39 -0.38 -3.93 16 30 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.13 3.08 5.64 -52.48 -0.30 2.79 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.10 0.81 8.09 -51.92 -0.42 0.39 16 35 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.40 1.65 8.61 -40.82 -0.35 1.30 16 37 H 0.08 0.30 8.12 -51.93 -0.42 -0.12 16 38 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.11 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -37.46 379.06 -9.36 -46.83 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.95 Total: 3.48 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -4.38 Total: -16.06 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.03 Total: -42.48 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.86 Total: 17.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.46 -9.36 -46.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779098053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.545 kcal (2) G-P(sol) polarization free energy of solvation -37.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds